HEADER HYDROLASE 29-SEP-09 3A7N TITLE CRYSTAL STRUCTURE OF URACIL-DNA GLYCOSYLASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDG; COMPND 5 EC: 3.2.2.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: UNG, RV2976C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSETB MTUUDG KEYWDS UNG-UGI INTERACTIONS, UNG-DNA COMPLEX, CITRATE AS PROTEIN LIGAND, KEYWDS 2 LIGAND BINDING, INHIBITOR DESIGN, DNA DAMAGE, DNA REPAIR, KEYWDS 3 GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.S.KAUSHAL,R.K.TALAWAR,U.VARSHNEY,M.VIJAYAN REVDAT 3 01-NOV-23 3A7N 1 REMARK SEQADV REVDAT 2 18-AUG-10 3A7N 1 JRNL REVDAT 1 11-AUG-10 3A7N 0 JRNL AUTH P.S.KAUSHAL,R.K.TALAWAR,U.VARSHNEY,M.VIJAYAN JRNL TITL STRUCTURE OF URACIL-DNA GLYCOSYLASE FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS: INSIGHTS INTO INTERACTIONS WITH LIGANDS JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 887 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20693660 JRNL DOI 10.1107/S1744309110023043 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.S.KAUSHAL,R.K.TALAWAR,P.D.V.KRISHNA,U.VARSHNEY,M.VIJAYAN REMARK 1 TITL UNIQUE FEATURES OF THE STRUCTURE AND INTERACTIONS OF REMARK 1 TITL 2 MYCOBACTERIAL URACIL-DNA GLYCOSYLASE: STRUCTURE OF A COMPLEX REMARK 1 TITL 3 OF THE MYCOBACTERIUM TUBERCULOSIS ENZYME IN COMPARISON WITH REMARK 1 TITL 4 THOSE FROM OTHER SOURCES REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 64 551 2008 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 18453691 REMARK 1 DOI 10.1107/S090744490800512X REMARK 1 REFERENCE 2 REMARK 1 AUTH K.SAIKRISHNAN,M.BIDYA SAGAR,R.RAVISHANKAR,S.ROY, REMARK 1 AUTH 2 K.PURNAPATRE,P.HANDA,U.VARSHNEY,M.VIJAYAN REMARK 1 TITL DOMAIN CLOSURE AND ACTION OF URACIL DNA GLYCOSYLASE (UDG): REMARK 1 TITL 2 STRUCTURES OF NEW CRYSTAL FORMS CONTAINING THE ESCHERICHIA REMARK 1 TITL 3 COLI ENZYME AND A COMPARATIVE STUDY OF THE KNOWN STRUCTURES REMARK 1 TITL 4 INVOLVING UDG REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 1269 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12136137 REMARK 1 DOI 10.1107/S0907444902009599 REMARK 1 REFERENCE 3 REMARK 1 AUTH R.RAVISHANKAR,M.BIDYA SAGAR,S.ROY,K.PURNAPATRE,P.HANDA, REMARK 1 AUTH 2 U.VARSHNEY,M.VIJAYAN REMARK 1 TITL X-RAY ANALYSIS OF A COMPLEX OF ESCHERICHIA COLI URACIL DNA REMARK 1 TITL 2 GLYCOSYLASE (ECUDG) WITH A PROTEINACEOUS INHIBITOR. THE REMARK 1 TITL 3 STRUCTURE ELUCIDATION OF A PROKARYOTIC UDG REMARK 1 REF NUCLEIC ACIDS RES. V. 26 4880 1998 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 9776748 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 17319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 885 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1255 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.309 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1841 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2521 ; 1.139 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 5.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;34.631 ;21.757 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 257 ;12.806 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.539 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1453 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 897 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1254 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 161 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.167 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1200 ; 0.337 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1884 ; 0.591 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 733 ; 0.919 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 637 ; 1.550 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 7 REMARK 3 ORIGIN FOR THE GROUP (A): -20.6111 -8.3295 23.3935 REMARK 3 T TENSOR REMARK 3 T11: -0.1022 T22: -0.0240 REMARK 3 T33: -0.0104 T12: -0.0154 REMARK 3 T13: 0.0470 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 6.5457 L22: 1.6157 REMARK 3 L33: 20.1559 L12: 2.1053 REMARK 3 L13: 11.2815 L23: 2.8110 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: -0.3617 S13: -0.0211 REMARK 3 S21: 0.1179 S22: -0.0708 S23: 0.1190 REMARK 3 S31: -0.0509 S32: -0.3558 S33: 0.1002 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8103 -3.5814 19.4602 REMARK 3 T TENSOR REMARK 3 T11: -0.0371 T22: -0.0292 REMARK 3 T33: -0.0147 T12: 0.0108 REMARK 3 T13: 0.0199 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 2.0481 L22: 0.5274 REMARK 3 L33: 2.5586 L12: 0.2632 REMARK 3 L13: 1.8469 L23: -0.1633 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: -0.0549 S13: 0.0611 REMARK 3 S21: 0.0222 S22: 0.0098 S23: 0.1159 REMARK 3 S31: -0.0834 S32: -0.0415 S33: 0.0449 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8588 -13.5983 13.4629 REMARK 3 T TENSOR REMARK 3 T11: -0.0082 T22: -0.0153 REMARK 3 T33: -0.0117 T12: 0.0005 REMARK 3 T13: -0.0045 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.3084 L22: 0.4309 REMARK 3 L33: 0.6013 L12: -0.1586 REMARK 3 L13: 0.0911 L23: 0.0722 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.0062 S13: -0.0179 REMARK 3 S21: 0.0065 S22: 0.0139 S23: 0.0341 REMARK 3 S31: 0.0449 S32: 0.0215 S33: -0.0030 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7650 -19.3417 11.3439 REMARK 3 T TENSOR REMARK 3 T11: -0.0109 T22: -0.0313 REMARK 3 T33: 0.0022 T12: 0.0073 REMARK 3 T13: 0.0061 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.0005 L22: 0.1073 REMARK 3 L33: 0.9245 L12: -0.0396 REMARK 3 L13: -0.1297 L23: 0.2120 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.0061 S13: -0.0926 REMARK 3 S21: 0.0045 S22: 0.0224 S23: -0.0105 REMARK 3 S31: 0.0273 S32: -0.0009 S33: -0.0245 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0618 -2.5201 15.1012 REMARK 3 T TENSOR REMARK 3 T11: -0.0011 T22: -0.0097 REMARK 3 T33: -0.0222 T12: -0.0068 REMARK 3 T13: -0.0063 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.5522 L22: 0.6446 REMARK 3 L33: 0.0848 L12: 0.1203 REMARK 3 L13: -0.0332 L23: 0.2190 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: -0.0285 S13: 0.0772 REMARK 3 S21: -0.0535 S22: 0.0248 S23: 0.0299 REMARK 3 S31: -0.0379 S32: 0.0463 S33: -0.0011 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1557 -8.8977 14.8366 REMARK 3 T TENSOR REMARK 3 T11: -0.0377 T22: -0.0182 REMARK 3 T33: -0.0231 T12: 0.0008 REMARK 3 T13: -0.0013 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.8861 L22: 0.8595 REMARK 3 L33: 1.1676 L12: -0.1213 REMARK 3 L13: -0.2407 L23: 0.0645 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: -0.0435 S13: 0.0488 REMARK 3 S21: -0.0150 S22: 0.0461 S23: -0.0932 REMARK 3 S31: -0.0631 S32: 0.1051 S33: -0.0430 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3A7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000028913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49300 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZHX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M TRI-AMMONIUM CITRATE PH 7.0, 10% REMARK 280 ISOPROPANOL, MICROBATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.42000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.42000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 12 NE CZ NH1 NH2 REMARK 470 ARG A 170 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 81 -16.75 74.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 229 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZHX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF URACIL-DNA GLYCOSYLASE FROM MYCOBACTERIUM REMARK 900 TUBERCULOSIS IN COMPLEX WITH A PROTEINACEOUS INHIBITOR DBREF 3A7N A 1 227 UNP P67071 UNG_MYCTU 1 227 SEQADV 3A7N MET A -10 UNP P67071 INITIATING METHIONINE SEQADV 3A7N HIS A -9 UNP P67071 EXPRESSION TAG SEQADV 3A7N HIS A -8 UNP P67071 EXPRESSION TAG SEQADV 3A7N HIS A -7 UNP P67071 EXPRESSION TAG SEQADV 3A7N HIS A -6 UNP P67071 EXPRESSION TAG SEQADV 3A7N HIS A -5 UNP P67071 EXPRESSION TAG SEQADV 3A7N HIS A -4 UNP P67071 EXPRESSION TAG SEQADV 3A7N GLY A -3 UNP P67071 EXPRESSION TAG SEQADV 3A7N MET A -2 UNP P67071 EXPRESSION TAG SEQADV 3A7N ALA A -1 UNP P67071 EXPRESSION TAG SEQADV 3A7N SER A 0 UNP P67071 EXPRESSION TAG SEQRES 1 A 238 MET HIS HIS HIS HIS HIS HIS GLY MET ALA SER MET THR SEQRES 2 A 238 ALA ARG PRO LEU SER GLU LEU VAL GLU ARG GLY TRP ALA SEQRES 3 A 238 ALA ALA LEU GLU PRO VAL ALA ASP GLN VAL ALA HIS MET SEQRES 4 A 238 GLY GLN PHE LEU ARG ALA GLU ILE ALA ALA GLY ARG ARG SEQRES 5 A 238 TYR LEU PRO ALA GLY SER ASN VAL LEU ARG ALA PHE THR SEQRES 6 A 238 PHE PRO PHE ASP ASN VAL ARG VAL LEU ILE VAL GLY GLN SEQRES 7 A 238 ASP PRO TYR PRO THR PRO GLY HIS ALA VAL GLY LEU SER SEQRES 8 A 238 PHE SER VAL ALA PRO ASP VAL ARG PRO TRP PRO ARG SER SEQRES 9 A 238 LEU ALA ASN ILE PHE ASP GLU TYR THR ALA ASP LEU GLY SEQRES 10 A 238 TYR PRO LEU PRO SER ASN GLY ASP LEU THR PRO TRP ALA SEQRES 11 A 238 GLN ARG GLY VAL LEU LEU LEU ASN ARG VAL LEU THR VAL SEQRES 12 A 238 ARG PRO SER ASN PRO ALA SER HIS ARG GLY LYS GLY TRP SEQRES 13 A 238 GLU ALA VAL THR GLU CYS ALA ILE ARG ALA LEU ALA ALA SEQRES 14 A 238 ARG ALA ALA PRO LEU VAL ALA ILE LEU TRP GLY ARG ASP SEQRES 15 A 238 ALA SER THR LEU LYS PRO MET LEU ALA ALA GLY ASN CYS SEQRES 16 A 238 VAL ALA ILE GLU SER PRO HIS PRO SER PRO LEU SER ALA SEQRES 17 A 238 SER ARG GLY PHE PHE GLY SER ARG PRO PHE SER ARG ALA SEQRES 18 A 238 ASN GLU LEU LEU VAL GLY MET GLY ALA GLU PRO ILE ASP SEQRES 19 A 238 TRP ARG LEU PRO HET FLC A 228 13 HET FLC A 229 13 HETNAM FLC CITRATE ANION FORMUL 2 FLC 2(C6 H5 O7 3-) FORMUL 4 HOH *193(H2 O) HELIX 1 1 GLY A -3 ARG A 4 1 8 HELIX 2 2 PRO A 5 LEU A 9 5 5 HELIX 3 3 GLU A 11 LEU A 18 1 8 HELIX 4 4 VAL A 21 ALA A 38 1 18 HELIX 5 5 ALA A 45 VAL A 49 5 5 HELIX 6 6 LEU A 50 THR A 54 5 5 HELIX 7 7 PRO A 56 VAL A 60 5 5 HELIX 8 8 PRO A 91 GLY A 106 1 16 HELIX 9 9 LEU A 115 ARG A 121 1 7 HELIX 10 10 GLY A 144 ARG A 159 1 16 HELIX 11 11 GLY A 169 THR A 174 1 6 HELIX 12 12 LEU A 175 ALA A 180 1 6 HELIX 13 13 ARG A 205 MET A 217 1 13 SHEET 1 A 4 VAL A 123 ASN A 127 0 SHEET 2 A 4 VAL A 62 GLY A 66 1 N VAL A 62 O LEU A 124 SHEET 3 A 4 LEU A 163 TRP A 168 1 O ILE A 166 N LEU A 63 SHEET 4 A 4 CYS A 184 SER A 189 1 O ILE A 187 N LEU A 167 CISPEP 1 LEU A 43 PRO A 44 0 0.24 CISPEP 2 ARG A 88 PRO A 89 0 -7.23 SITE 1 AC1 10 GLN A 67 ASP A 68 TYR A 70 SER A 80 SITE 2 AC1 10 PHE A 81 SER A 93 ASN A 127 HIS A 191 SITE 3 AC1 10 HOH A 230 HOH A 380 SITE 1 AC2 12 MET A -2 HIS A -5 GLY A -3 TYR A 42 SITE 2 AC2 12 ALA A 45 GLY A 46 ARG A 92 ARG A 205 SITE 3 AC2 12 HOH A 277 HOH A 292 HOH A 334 HOH A 402 CRYST1 44.840 63.670 86.400 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011574 0.00000