HEADER BIOSYNTHETIC PROTEIN 05-OCT-09 3A8E TITLE THE STRUCTURE OF AXCESD OCTAMER COMPLEXED WITH CELLOPENTAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSE SYNTHASE OPERON PROTEIN D; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CELLULOSE SYNTHASE SUBUNIT D, AXCESD; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACETOBACTER XYLINUS; SOURCE 3 ORGANISM_COMMON: GLUCONACETOBACTER XYLINUS; SOURCE 4 ORGANISM_TAXID: 28448; SOURCE 5 STRAIN: ATCC 23769; SOURCE 6 GENE: ACSD; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-28 KEYWDS COMPLEX, OCTAMER, TETRAMER OF DIMERS, MOLECULE RING, CELLULOSE KEYWDS 2 BIOSYNTHESIS, BCSD, TC, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.Q.HU,K.TAJIMA,Y.ZHOU,M.YAO,I.TANAKA REVDAT 7 01-NOV-23 3A8E 1 HETSYN REVDAT 6 29-JUL-20 3A8E 1 COMPND REMARK SEQADV HET REVDAT 6 2 1 HETNAM FORMUL LINK SITE REVDAT 6 3 1 ATOM REVDAT 5 11-OCT-17 3A8E 1 REMARK REVDAT 4 03-NOV-10 3A8E 1 JRNL REVDAT 3 06-OCT-10 3A8E 1 REMARK REVDAT 2 29-SEP-10 3A8E 1 JRNL TITLE REVDAT 1 22-SEP-10 3A8E 0 JRNL AUTH S.Q.HU,Y.G.GAO,K.TAJIMA,N.SUNAGAWA,Y.ZHOU,S.KAWANO, JRNL AUTH 2 T.FUJIWARA,T.YODA,D.SHIMURA,Y.SATOH,M.MUNEKATA,I.TANAKA, JRNL AUTH 3 M.YAO JRNL TITL STRUCTURE OF BACTERIAL CELLULOSE SYNTHASE SUBUNIT D OCTAMER JRNL TITL 2 WITH FOUR INNER PASSAGEWAYS JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 17957 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20921370 JRNL DOI 10.1073/PNAS.1000601107 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.YAO,S.Q.HU,Y.G.GAO,K.TAJIMA,T.YODA,D.SHIMURA,Y.SATOH, REMARK 1 AUTH 2 S.KAWANO,I.TANAKA,M.MUNEKATA REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY X-RAY STUDIES REMARK 1 TITL 2 OF AXCESD REQUIRED FOR EFFICIENT CELLULOSE BIOSYNTHESIS IN REMARK 1 TITL 3 ACETOBACTER XYLINUM REMARK 1 REF PROTEIN PEPT.LETT. V. 15 115 2008 REMARK 1 REFN ISSN 0929-8665 REMARK 1 PMID 18221022 REMARK 1 DOI 10.2174/092986608783330422 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1925 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1254 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 168 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.493 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.337 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.882 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5171 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7071 ; 1.469 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 609 ; 6.934 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;44.736 ;24.105 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 827 ;22.525 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;19.860 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 867 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3740 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2763 ; 0.277 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3460 ; 0.325 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 250 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 163 ; 0.309 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3112 ; 0.498 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4928 ; 0.885 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2298 ; 0.491 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2143 ; 0.872 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 10 REMARK 3 RESIDUE RANGE : B 4 B 10 REMARK 3 RESIDUE RANGE : C 4 C 10 REMARK 3 RESIDUE RANGE : D 4 D 10 REMARK 3 ORIGIN FOR THE GROUP (A): 62.2748 4.2001 98.6902 REMARK 3 T TENSOR REMARK 3 T11: 0.3433 T22: 0.4321 REMARK 3 T33: 0.3846 T12: -0.0968 REMARK 3 T13: -0.0544 T23: -0.0799 REMARK 3 L TENSOR REMARK 3 L11: 0.0603 L22: 0.0003 REMARK 3 L33: 32.3170 L12: 0.0043 REMARK 3 L13: 1.3962 L23: 0.0987 REMARK 3 S TENSOR REMARK 3 S11: 0.2627 S12: 0.1848 S13: -0.6853 REMARK 3 S21: 0.2514 S22: 0.3016 S23: -0.6723 REMARK 3 S31: 1.5153 S32: 1.9767 S33: -0.5643 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 68.6087 16.4985 122.1649 REMARK 3 T TENSOR REMARK 3 T11: -0.0604 T22: -0.0038 REMARK 3 T33: -0.1942 T12: -0.1081 REMARK 3 T13: -0.0440 T23: -0.1057 REMARK 3 L TENSOR REMARK 3 L11: 5.4110 L22: 4.1238 REMARK 3 L33: 2.4864 L12: -2.2084 REMARK 3 L13: 1.0875 L23: -0.8109 REMARK 3 S TENSOR REMARK 3 S11: -0.2066 S12: -0.5559 S13: 0.5546 REMARK 3 S21: 0.5245 S22: 0.1080 S23: -0.2799 REMARK 3 S31: -0.5718 S32: 0.3006 S33: 0.0986 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6793 7.1399 108.9796 REMARK 3 T TENSOR REMARK 3 T11: -0.2536 T22: 0.0249 REMARK 3 T33: -0.0656 T12: 0.0148 REMARK 3 T13: 0.0847 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 2.9939 L22: 1.3811 REMARK 3 L33: 5.4246 L12: 0.5794 REMARK 3 L13: 1.1755 L23: 0.3970 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.2876 S13: 0.2212 REMARK 3 S21: 0.0980 S22: -0.0846 S23: 0.4237 REMARK 3 S31: -0.0477 S32: -0.7206 S33: 0.0854 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 150 REMARK 3 ORIGIN FOR THE GROUP (A): 59.1848 25.7037 88.5536 REMARK 3 T TENSOR REMARK 3 T11: -0.0903 T22: -0.2232 REMARK 3 T33: -0.0260 T12: -0.0421 REMARK 3 T13: -0.0918 T23: 0.0923 REMARK 3 L TENSOR REMARK 3 L11: 1.9913 L22: 2.8415 REMARK 3 L33: 5.7101 L12: 0.0779 REMARK 3 L13: 0.1388 L23: 1.6334 REMARK 3 S TENSOR REMARK 3 S11: -0.1094 S12: 0.1267 S13: 0.5006 REMARK 3 S21: -0.0719 S22: 0.0973 S23: 0.0553 REMARK 3 S31: -0.8392 S32: 0.0505 S33: 0.0121 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 11 D 150 REMARK 3 ORIGIN FOR THE GROUP (A): 50.0476 -2.2724 75.0951 REMARK 3 T TENSOR REMARK 3 T11: -0.2005 T22: 0.0900 REMARK 3 T33: -0.1267 T12: -0.1919 REMARK 3 T13: -0.0629 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 4.1969 L22: 4.9260 REMARK 3 L33: 2.7436 L12: -2.3081 REMARK 3 L13: -0.9608 L23: 1.6437 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: 0.5852 S13: -0.3172 REMARK 3 S21: -0.3485 S22: -0.1535 S23: 0.4894 REMARK 3 S31: 0.1227 S32: -0.5782 S33: 0.2323 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; LAFIRE WAS ALSO USED IN REFINEMENT REMARK 4 REMARK 4 3A8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000028940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19771 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 24.0670 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : 0.39900 REMARK 200 FOR SHELL : 3.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, LAFIRE REMARK 200 STARTING MODEL: PDB ENTRY 2Z9F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PHOSPHATE-CITRATE, 0.2M LI2SO4, REMARK 280 10% (V/V) ISO-PROPANOL, PH 5.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.43850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 66.43850 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.33350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.43850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.16675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.43850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 162.50025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.43850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 162.50025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.43850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.16675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 66.43850 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 66.43850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.33350 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 66.43850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 66.43850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 108.33350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 66.43850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 162.50025 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 66.43850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 54.16675 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.43850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 54.16675 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 66.43850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 162.50025 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 66.43850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 66.43850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 108.33350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 132.87700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 203 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ILE A 3 REMARK 465 ARG A 152 REMARK 465 SER A 153 REMARK 465 SER A 154 REMARK 465 ALA A 155 REMARK 465 THR A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ILE B 3 REMARK 465 HIS B 162 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ILE C 3 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ILE D 3 REMARK 465 ARG D 152 REMARK 465 SER D 153 REMARK 465 SER D 154 REMARK 465 ALA D 155 REMARK 465 THR D 156 REMARK 465 HIS D 157 REMARK 465 HIS D 158 REMARK 465 HIS D 159 REMARK 465 HIS D 160 REMARK 465 HIS D 161 REMARK 465 HIS D 162 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 49 107.32 -58.63 REMARK 500 ASP A 125 73.34 -116.84 REMARK 500 ASP A 131 95.62 -68.43 REMARK 500 VAL A 132 45.49 -100.31 REMARK 500 ASP A 136 36.96 -98.31 REMARK 500 LEU A 137 -51.76 -127.70 REMARK 500 ASN A 138 -5.13 -59.53 REMARK 500 ARG A 150 -154.43 -145.56 REMARK 500 GLU B 135 -2.65 73.03 REMARK 500 LEU C 104 1.05 -68.81 REMARK 500 ALA C 120 99.97 -50.95 REMARK 500 ALA C 122 -87.65 -56.48 REMARK 500 HIS C 161 60.97 -69.92 REMARK 500 LYS D 7 -153.92 -152.27 REMARK 500 ALA D 120 45.65 -66.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 7 PRO B 8 -141.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z9E RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH N-TERMINUS HIS-TAG REMARK 900 RELATED ID: 2Z9F RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGAND DBREF 3A8E A 1 156 UNP P37719 ACSD_ACEXY 1 156 DBREF 3A8E B 1 156 UNP P37719 ACSD_ACEXY 1 156 DBREF 3A8E C 1 156 UNP P37719 ACSD_ACEXY 1 156 DBREF 3A8E D 1 156 UNP P37719 ACSD_ACEXY 1 156 SEQADV 3A8E HIS A 157 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS A 158 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS A 159 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS A 160 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS A 161 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS A 162 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS B 157 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS B 158 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS B 159 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS B 160 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS B 161 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS B 162 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS C 157 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS C 158 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS C 159 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS C 160 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS C 161 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS C 162 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS D 157 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS D 158 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS D 159 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS D 160 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS D 161 UNP P37719 EXPRESSION TAG SEQADV 3A8E HIS D 162 UNP P37719 EXPRESSION TAG SEQRES 1 A 162 MET THR ILE PHE GLU LYS LYS PRO ASP PHE THR LEU PHE SEQRES 2 A 162 LEU GLN THR LEU SER TRP GLU ILE ASP ASP GLN VAL GLY SEQRES 3 A 162 ILE GLU VAL ARG ASN GLU LEU LEU ARG GLU VAL GLY ARG SEQRES 4 A 162 GLY MET GLY THR ARG ILE MET PRO PRO PRO CYS GLN THR SEQRES 5 A 162 VAL ASP LYS LEU GLN ILE GLU LEU ASN ALA LEU LEU ALA SEQRES 6 A 162 LEU ILE GLY TRP GLY THR VAL THR LEU GLU LEU LEU SER SEQRES 7 A 162 GLU ASP GLN SER LEU ARG ILE VAL HIS GLU ASN LEU PRO SEQRES 8 A 162 GLN VAL GLY SER ALA GLY GLU PRO SER GLY THR TRP LEU SEQRES 9 A 162 ALA PRO VAL LEU GLU GLY LEU TYR GLY ARG TRP VAL THR SEQRES 10 A 162 SER GLN ALA GLY ALA PHE GLY ASP TYR VAL VAL THR ARG SEQRES 11 A 162 ASP VAL ASP ALA GLU ASP LEU ASN ALA VAL PRO ARG GLN SEQRES 12 A 162 THR ILE ILE MET TYR MET ARG VAL ARG SER SER ALA THR SEQRES 13 A 162 HIS HIS HIS HIS HIS HIS SEQRES 1 B 162 MET THR ILE PHE GLU LYS LYS PRO ASP PHE THR LEU PHE SEQRES 2 B 162 LEU GLN THR LEU SER TRP GLU ILE ASP ASP GLN VAL GLY SEQRES 3 B 162 ILE GLU VAL ARG ASN GLU LEU LEU ARG GLU VAL GLY ARG SEQRES 4 B 162 GLY MET GLY THR ARG ILE MET PRO PRO PRO CYS GLN THR SEQRES 5 B 162 VAL ASP LYS LEU GLN ILE GLU LEU ASN ALA LEU LEU ALA SEQRES 6 B 162 LEU ILE GLY TRP GLY THR VAL THR LEU GLU LEU LEU SER SEQRES 7 B 162 GLU ASP GLN SER LEU ARG ILE VAL HIS GLU ASN LEU PRO SEQRES 8 B 162 GLN VAL GLY SER ALA GLY GLU PRO SER GLY THR TRP LEU SEQRES 9 B 162 ALA PRO VAL LEU GLU GLY LEU TYR GLY ARG TRP VAL THR SEQRES 10 B 162 SER GLN ALA GLY ALA PHE GLY ASP TYR VAL VAL THR ARG SEQRES 11 B 162 ASP VAL ASP ALA GLU ASP LEU ASN ALA VAL PRO ARG GLN SEQRES 12 B 162 THR ILE ILE MET TYR MET ARG VAL ARG SER SER ALA THR SEQRES 13 B 162 HIS HIS HIS HIS HIS HIS SEQRES 1 C 162 MET THR ILE PHE GLU LYS LYS PRO ASP PHE THR LEU PHE SEQRES 2 C 162 LEU GLN THR LEU SER TRP GLU ILE ASP ASP GLN VAL GLY SEQRES 3 C 162 ILE GLU VAL ARG ASN GLU LEU LEU ARG GLU VAL GLY ARG SEQRES 4 C 162 GLY MET GLY THR ARG ILE MET PRO PRO PRO CYS GLN THR SEQRES 5 C 162 VAL ASP LYS LEU GLN ILE GLU LEU ASN ALA LEU LEU ALA SEQRES 6 C 162 LEU ILE GLY TRP GLY THR VAL THR LEU GLU LEU LEU SER SEQRES 7 C 162 GLU ASP GLN SER LEU ARG ILE VAL HIS GLU ASN LEU PRO SEQRES 8 C 162 GLN VAL GLY SER ALA GLY GLU PRO SER GLY THR TRP LEU SEQRES 9 C 162 ALA PRO VAL LEU GLU GLY LEU TYR GLY ARG TRP VAL THR SEQRES 10 C 162 SER GLN ALA GLY ALA PHE GLY ASP TYR VAL VAL THR ARG SEQRES 11 C 162 ASP VAL ASP ALA GLU ASP LEU ASN ALA VAL PRO ARG GLN SEQRES 12 C 162 THR ILE ILE MET TYR MET ARG VAL ARG SER SER ALA THR SEQRES 13 C 162 HIS HIS HIS HIS HIS HIS SEQRES 1 D 162 MET THR ILE PHE GLU LYS LYS PRO ASP PHE THR LEU PHE SEQRES 2 D 162 LEU GLN THR LEU SER TRP GLU ILE ASP ASP GLN VAL GLY SEQRES 3 D 162 ILE GLU VAL ARG ASN GLU LEU LEU ARG GLU VAL GLY ARG SEQRES 4 D 162 GLY MET GLY THR ARG ILE MET PRO PRO PRO CYS GLN THR SEQRES 5 D 162 VAL ASP LYS LEU GLN ILE GLU LEU ASN ALA LEU LEU ALA SEQRES 6 D 162 LEU ILE GLY TRP GLY THR VAL THR LEU GLU LEU LEU SER SEQRES 7 D 162 GLU ASP GLN SER LEU ARG ILE VAL HIS GLU ASN LEU PRO SEQRES 8 D 162 GLN VAL GLY SER ALA GLY GLU PRO SER GLY THR TRP LEU SEQRES 9 D 162 ALA PRO VAL LEU GLU GLY LEU TYR GLY ARG TRP VAL THR SEQRES 10 D 162 SER GLN ALA GLY ALA PHE GLY ASP TYR VAL VAL THR ARG SEQRES 11 D 162 ASP VAL ASP ALA GLU ASP LEU ASN ALA VAL PRO ARG GLN SEQRES 12 D 162 THR ILE ILE MET TYR MET ARG VAL ARG SER SER ALA THR SEQRES 13 D 162 HIS HIS HIS HIS HIS HIS HET BGC E 1 12 HET BGC E 2 11 HET BGC E 3 11 HET BGC E 4 11 HET BGC E 5 11 HET BGC F 1 24 HET BGC F 2 22 HET BGC F 3 22 HET BGC F 4 22 HET BGC F 5 22 HET BGC G 1 12 HET BGC G 2 11 HET BGC G 3 11 HET BGC G 4 11 HET BGC G 5 11 HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 5 BGC 15(C6 H12 O6) FORMUL 8 HOH *178(H2 O) HELIX 1 1 PHE A 10 VAL A 25 1 16 HELIX 2 2 GLY A 26 ILE A 45 1 20 HELIX 3 3 THR A 52 GLY A 68 1 17 HELIX 4 4 LEU A 104 SER A 118 1 15 HELIX 5 5 ASP A 133 LEU A 137 5 5 HELIX 6 6 PHE B 10 VAL B 25 1 16 HELIX 7 7 GLY B 26 ILE B 45 1 20 HELIX 8 8 THR B 52 GLY B 68 1 17 HELIX 9 9 LEU B 104 GLN B 119 1 16 HELIX 10 10 PHE C 10 VAL C 25 1 16 HELIX 11 11 GLY C 26 ILE C 45 1 20 HELIX 12 12 THR C 52 ILE C 67 1 16 HELIX 13 13 LEU C 104 SER C 118 1 15 HELIX 14 14 ASP C 133 ASN C 138 1 6 HELIX 15 15 PHE D 10 GLY D 26 1 17 HELIX 16 16 GLY D 26 ILE D 45 1 20 HELIX 17 17 THR D 52 GLY D 68 1 17 HELIX 18 18 LEU D 104 GLN D 119 1 16 SHEET 1 A 4 THR A 71 LEU A 77 0 SHEET 2 A 4 SER A 82 GLU A 88 -1 O ARG A 84 N GLU A 75 SHEET 3 A 4 ILE A 145 ARG A 150 -1 O ILE A 145 N HIS A 87 SHEET 4 A 4 VAL A 127 ARG A 130 -1 N THR A 129 O TYR A 148 SHEET 1 B 4 VAL B 72 LEU B 77 0 SHEET 2 B 4 SER B 82 HIS B 87 -1 O VAL B 86 N THR B 73 SHEET 3 B 4 ILE B 145 VAL B 151 -1 O MET B 147 N ILE B 85 SHEET 4 B 4 TYR B 126 ASP B 131 -1 N ASP B 131 O ILE B 146 SHEET 1 C 4 THR C 71 LEU C 76 0 SHEET 2 C 4 LEU C 83 GLU C 88 -1 O VAL C 86 N THR C 73 SHEET 3 C 4 ILE C 145 VAL C 151 -1 O MET C 149 N LEU C 83 SHEET 4 C 4 TYR C 126 ARG C 130 -1 N THR C 129 O TYR C 148 SHEET 1 D 4 THR D 71 LEU D 77 0 SHEET 2 D 4 SER D 82 GLU D 88 -1 O SER D 82 N LEU D 77 SHEET 3 D 4 THR D 144 ARG D 150 -1 O MET D 147 N ILE D 85 SHEET 4 D 4 VAL D 127 THR D 129 -1 N THR D 129 O TYR D 148 LINK O4 BGC E 1 C1 BGC E 2 1555 1555 1.44 LINK O4 BGC E 2 C1 BGC E 3 1555 1555 1.43 LINK O4 BGC E 3 C1 BGC E 4 1555 1555 1.45 LINK O4 BGC E 4 C1 BGC E 5 1555 1555 1.43 LINK O4 ABGC F 1 C1 ABGC F 2 1555 1555 1.44 LINK O4 BBGC F 1 C1 BBGC F 2 1555 1555 1.43 LINK O4 ABGC F 2 C1 ABGC F 3 1555 1555 1.43 LINK O4 BBGC F 2 C1 BBGC F 3 1555 1555 1.43 LINK O4 ABGC F 3 C1 ABGC F 4 1555 1555 1.44 LINK O4 BBGC F 3 C1 BBGC F 4 1555 1555 1.45 LINK O4 ABGC F 4 C1 ABGC F 5 1555 1555 1.43 LINK O4 BBGC F 4 C1 BBGC F 5 1555 1555 1.43 LINK O4 BGC G 1 C1 BGC G 2 1555 1555 1.44 LINK O4 BGC G 2 C1 BGC G 3 1555 1555 1.43 LINK O4 BGC G 3 C1 BGC G 4 1555 1555 1.45 LINK O4 BGC G 4 C1 BGC G 5 1555 1555 1.43 CISPEP 1 GLU A 98 PRO A 99 0 -1.68 CISPEP 2 GLU B 98 PRO B 99 0 3.07 CISPEP 3 GLU C 98 PRO C 99 0 1.74 CISPEP 4 GLU D 98 PRO D 99 0 7.12 CRYST1 132.877 132.877 216.667 90.00 90.00 90.00 I 41 2 2 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004615 0.00000