HEADER SIGNALING PROTEIN 07-OCT-09 3A8Q TITLE LOW-RESOLUTION CRYSTAL STRUCTURE OF THE TIAM2 PHCCEX DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-LYMPHOMA INVASION AND METASTASIS-INDUCING PROTEIN 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PHCCEX DOMAIN, RESIDUES 500-757; COMPND 5 SYNONYM: TIAM-2, SIF AND TIAM1-LIKE EXCHANGE FACTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TIAM2, KIAA2016, STEF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P-3 KEYWDS GUANINE NUCLEOTIDE EXCHANGE FACTOR, ALTERNATIVE SPLICING, CELL KEYWDS 2 PROJECTION, COILED COIL, CYTOPLASM, GUANINE-NUCLEOTIDE RELEASING KEYWDS 3 FACTOR, LIPOPROTEIN, MYRISTATE, PHOSPHOPROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.TERAWAKI,K.KITANO,T.MORI,Y.ZHAI,Y.HIGUCHI,N.ITOH,T.WATANABE, AUTHOR 2 K.KAIBUCHI,T.HAKOSHIMA REVDAT 3 13-MAR-24 3A8Q 1 SEQADV REVDAT 2 19-JAN-10 3A8Q 1 JRNL REVDAT 1 24-NOV-09 3A8Q 0 JRNL AUTH S.TERAWAKI,K.KITANO,T.MORI,Y.ZHAI,Y.HIGUCHI,N.ITOH, JRNL AUTH 2 T.WATANABE,K.KAIBUCHI,T.HAKOSHIMA JRNL TITL THE PHCCEX DOMAIN OF TIAM1/2 IS A NOVEL PROTEIN- AND JRNL TITL 2 MEMBRANE-BINDING MODULE JRNL REF EMBO J. V. 29 236 2010 JRNL REFN ISSN 0261-4189 JRNL PMID 19893486 JRNL DOI 10.1038/EMBOJ.2009.323 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4378236.590 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 25490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.283 REMARK 3 FREE R VALUE : 0.332 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2518 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2419 REMARK 3 BIN R VALUE (WORKING SET) : 0.4540 REMARK 3 BIN FREE R VALUE : 0.4880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 255 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.031 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7412 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 144.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 27.32000 REMARK 3 B22 (A**2) : 27.32000 REMARK 3 B33 (A**2) : -54.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.62 REMARK 3 ESD FROM SIGMAA (A) : 1.02 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.73 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.08 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 91.41 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3A8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000028952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27986 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3350, 100MM BIS-TRIS PH 6.5, REMARK 280 200MM LITHIUM SULFATE MONOHYDORATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.79000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.78000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 215.68500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.78000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.89500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.78000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.78000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 215.68500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.78000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.78000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.89500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 143.79000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 495 REMARK 465 PRO A 496 REMARK 465 LEU A 497 REMARK 465 GLY A 498 REMARK 465 SER A 499 REMARK 465 LYS A 500 REMARK 465 GLU A 501 REMARK 465 GLN A 502 REMARK 465 GLY A 503 REMARK 465 GLY A 552 REMARK 465 LYS A 553 REMARK 465 ASN A 554 REMARK 465 SER A 555 REMARK 465 THR A 556 REMARK 465 GLU A 557 REMARK 465 GLN A 558 REMARK 465 ASN A 559 REMARK 465 SER A 743 REMARK 465 THR A 744 REMARK 465 LEU A 745 REMARK 465 ARG A 746 REMARK 465 LYS A 747 REMARK 465 ARG A 748 REMARK 465 THR A 749 REMARK 465 LEU A 750 REMARK 465 SER A 751 REMARK 465 LEU A 752 REMARK 465 THR A 753 REMARK 465 GLN A 754 REMARK 465 ARG A 755 REMARK 465 GLY A 756 REMARK 465 LYS A 757 REMARK 465 GLY B 495 REMARK 465 PRO B 496 REMARK 465 LEU B 497 REMARK 465 GLY B 498 REMARK 465 SER B 499 REMARK 465 LYS B 500 REMARK 465 GLU B 501 REMARK 465 GLN B 502 REMARK 465 GLY B 503 REMARK 465 GLY B 552 REMARK 465 LYS B 553 REMARK 465 ASN B 554 REMARK 465 SER B 555 REMARK 465 THR B 556 REMARK 465 GLU B 557 REMARK 465 GLN B 558 REMARK 465 ASN B 559 REMARK 465 SER B 743 REMARK 465 THR B 744 REMARK 465 LEU B 745 REMARK 465 ARG B 746 REMARK 465 LYS B 747 REMARK 465 ARG B 748 REMARK 465 THR B 749 REMARK 465 LEU B 750 REMARK 465 SER B 751 REMARK 465 LEU B 752 REMARK 465 THR B 753 REMARK 465 GLN B 754 REMARK 465 ARG B 755 REMARK 465 GLY B 756 REMARK 465 LYS B 757 REMARK 465 GLY C 495 REMARK 465 PRO C 496 REMARK 465 LEU C 497 REMARK 465 GLY C 498 REMARK 465 SER C 499 REMARK 465 LYS C 500 REMARK 465 GLU C 501 REMARK 465 GLN C 502 REMARK 465 GLY C 503 REMARK 465 GLY C 552 REMARK 465 LYS C 553 REMARK 465 ASN C 554 REMARK 465 SER C 555 REMARK 465 THR C 556 REMARK 465 GLU C 557 REMARK 465 GLN C 558 REMARK 465 ASN C 559 REMARK 465 SER C 743 REMARK 465 THR C 744 REMARK 465 LEU C 745 REMARK 465 ARG C 746 REMARK 465 LYS C 747 REMARK 465 ARG C 748 REMARK 465 THR C 749 REMARK 465 LEU C 750 REMARK 465 SER C 751 REMARK 465 LEU C 752 REMARK 465 THR C 753 REMARK 465 GLN C 754 REMARK 465 ARG C 755 REMARK 465 GLY C 756 REMARK 465 LYS C 757 REMARK 465 GLY D 495 REMARK 465 PRO D 496 REMARK 465 LEU D 497 REMARK 465 GLY D 498 REMARK 465 SER D 499 REMARK 465 LYS D 500 REMARK 465 GLU D 501 REMARK 465 GLN D 502 REMARK 465 GLY D 503 REMARK 465 GLY D 552 REMARK 465 LYS D 553 REMARK 465 ASN D 554 REMARK 465 SER D 555 REMARK 465 THR D 556 REMARK 465 GLU D 557 REMARK 465 GLN D 558 REMARK 465 ASN D 559 REMARK 465 SER D 743 REMARK 465 THR D 744 REMARK 465 LEU D 745 REMARK 465 ARG D 746 REMARK 465 LYS D 747 REMARK 465 ARG D 748 REMARK 465 THR D 749 REMARK 465 LEU D 750 REMARK 465 SER D 751 REMARK 465 LEU D 752 REMARK 465 THR D 753 REMARK 465 GLN D 754 REMARK 465 ARG D 755 REMARK 465 GLY D 756 REMARK 465 LYS D 757 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 742 CG OD1 OD2 REMARK 470 ASP B 742 CG OD1 OD2 REMARK 470 ASP C 742 CG OD1 OD2 REMARK 470 ASP D 742 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 508 130.92 -175.26 REMARK 500 LYS A 514 85.75 164.12 REMARK 500 GLU A 522 41.62 70.79 REMARK 500 ARG A 523 62.75 39.63 REMARK 500 VAL A 528 146.08 55.24 REMARK 500 ALA A 529 96.07 -50.55 REMARK 500 ARG A 530 69.55 -39.67 REMARK 500 ARG A 531 -157.44 -67.47 REMARK 500 GLN A 535 167.69 -45.25 REMARK 500 TYR A 536 134.15 -174.27 REMARK 500 CYS A 543 30.60 -145.73 REMARK 500 LYS A 581 -82.53 -72.46 REMARK 500 CYS A 592 10.98 -159.62 REMARK 500 MET A 647 -74.77 -60.77 REMARK 500 MET A 654 -81.83 -75.12 REMARK 500 GLU A 656 -72.00 -57.91 REMARK 500 GLN A 658 -58.30 -159.26 REMARK 500 VAL A 661 -51.38 -158.21 REMARK 500 PRO A 665 -7.33 -42.73 REMARK 500 LYS A 666 -72.17 -59.74 REMARK 500 GLU A 672 -10.78 -47.51 REMARK 500 LEU A 699 -57.12 -130.49 REMARK 500 LEU A 722 26.44 -78.83 REMARK 500 ALA B 508 130.77 -175.30 REMARK 500 LYS B 514 85.60 165.04 REMARK 500 LYS B 521 139.63 -39.73 REMARK 500 GLU B 522 41.26 70.87 REMARK 500 ARG B 523 63.36 39.71 REMARK 500 VAL B 528 146.23 54.93 REMARK 500 ALA B 529 95.60 -50.57 REMARK 500 ARG B 530 69.42 -39.23 REMARK 500 ARG B 531 -157.98 -67.68 REMARK 500 GLN B 535 167.35 -47.54 REMARK 500 TYR B 536 135.48 -174.72 REMARK 500 CYS B 543 30.15 -146.83 REMARK 500 LYS B 581 -81.40 -73.48 REMARK 500 CYS B 592 11.17 -159.17 REMARK 500 MET B 647 -74.89 -60.64 REMARK 500 MET B 654 -81.06 -74.21 REMARK 500 GLU B 656 -72.68 -58.98 REMARK 500 GLN B 658 -57.37 -158.74 REMARK 500 VAL B 661 -50.07 -159.78 REMARK 500 PRO B 665 -6.77 -43.71 REMARK 500 LYS B 666 -71.93 -60.62 REMARK 500 GLU B 672 -11.84 -47.39 REMARK 500 LEU B 699 -56.41 -129.08 REMARK 500 LEU B 722 25.46 -77.52 REMARK 500 ALA C 508 130.35 -175.45 REMARK 500 LYS C 514 86.06 163.86 REMARK 500 GLU C 522 41.96 71.07 REMARK 500 REMARK 500 THIS ENTRY HAS 96 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A8N RELATED DB: PDB REMARK 900 TIAM1 PHCCEX DOMAIN REMARK 900 RELATED ID: 3A8P RELATED DB: PDB REMARK 900 TIAM2 PHCCEX DOMAIN DBREF 3A8Q A 500 757 UNP Q6ZPF3 TIAM2_MOUSE 500 757 DBREF 3A8Q B 500 757 UNP Q6ZPF3 TIAM2_MOUSE 500 757 DBREF 3A8Q C 500 757 UNP Q6ZPF3 TIAM2_MOUSE 500 757 DBREF 3A8Q D 500 757 UNP Q6ZPF3 TIAM2_MOUSE 500 757 SEQADV 3A8Q GLY A 495 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q PRO A 496 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q LEU A 497 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q GLY A 498 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q SER A 499 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q GLY B 495 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q PRO B 496 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q LEU B 497 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q GLY B 498 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q SER B 499 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q GLY C 495 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q PRO C 496 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q LEU C 497 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q GLY C 498 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q SER C 499 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q GLY D 495 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q PRO D 496 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q LEU D 497 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q GLY D 498 UNP Q6ZPF3 EXPRESSION TAG SEQADV 3A8Q SER D 499 UNP Q6ZPF3 EXPRESSION TAG SEQRES 1 A 263 GLY PRO LEU GLY SER LYS GLU GLN GLY VAL VAL ARG LYS SEQRES 2 A 263 ALA GLY TRP LEU PHE PHE LYS PRO LEU VAL THR LEU GLN SEQRES 3 A 263 LYS GLU ARG LYS LEU GLU LEU VAL ALA ARG ARG LYS TRP SEQRES 4 A 263 LYS GLN TYR TRP VAL THR LEU LYS GLY CYS THR LEU LEU SEQRES 5 A 263 PHE TYR GLU THR TYR GLY LYS ASN SER THR GLU GLN ASN SEQRES 6 A 263 SER ALA PRO ARG CYS ALA LEU PHE ALA GLU ASP SER ILE SEQRES 7 A 263 VAL GLN SER VAL PRO GLU HIS PRO LYS LYS GLU HIS VAL SEQRES 8 A 263 PHE CYS LEU SER ASN SER CYS GLY ASP VAL TYR LEU PHE SEQRES 9 A 263 GLN ALA THR SER GLN THR ASP LEU GLU ASN TRP VAL THR SEQRES 10 A 263 ALA ILE HIS SER ALA CYS ALA SER LEU PHE ALA LYS LYS SEQRES 11 A 263 HIS GLY LYS GLU ASP THR VAL ARG LEU LEU LYS SER GLN SEQRES 12 A 263 THR ARG SER LEU LEU GLN LYS ILE ASP MET ASP SER LYS SEQRES 13 A 263 MET LYS LYS MET ALA GLU LEU GLN LEU SER VAL VAL SER SEQRES 14 A 263 ASP PRO LYS ASN ARG LYS ALA ILE GLU ASN GLN ILE ARG SEQRES 15 A 263 GLN TRP GLU GLN ASN LEU GLU LYS PHE HIS MET ASP LEU SEQRES 16 A 263 PHE ARG MET ARG CYS TYR LEU ALA SER LEU GLN GLY GLY SEQRES 17 A 263 GLU LEU PRO ASN PRO LYS SER LEU LEU ALA ALA THR SER SEQRES 18 A 263 ARG PRO SER LYS LEU ALA LEU GLY ARG LEU GLY VAL LEU SEQRES 19 A 263 SER VAL SER SER PHE HIS ALA LEU VAL CYS SER ARG ASP SEQRES 20 A 263 ASP SER THR LEU ARG LYS ARG THR LEU SER LEU THR GLN SEQRES 21 A 263 ARG GLY LYS SEQRES 1 B 263 GLY PRO LEU GLY SER LYS GLU GLN GLY VAL VAL ARG LYS SEQRES 2 B 263 ALA GLY TRP LEU PHE PHE LYS PRO LEU VAL THR LEU GLN SEQRES 3 B 263 LYS GLU ARG LYS LEU GLU LEU VAL ALA ARG ARG LYS TRP SEQRES 4 B 263 LYS GLN TYR TRP VAL THR LEU LYS GLY CYS THR LEU LEU SEQRES 5 B 263 PHE TYR GLU THR TYR GLY LYS ASN SER THR GLU GLN ASN SEQRES 6 B 263 SER ALA PRO ARG CYS ALA LEU PHE ALA GLU ASP SER ILE SEQRES 7 B 263 VAL GLN SER VAL PRO GLU HIS PRO LYS LYS GLU HIS VAL SEQRES 8 B 263 PHE CYS LEU SER ASN SER CYS GLY ASP VAL TYR LEU PHE SEQRES 9 B 263 GLN ALA THR SER GLN THR ASP LEU GLU ASN TRP VAL THR SEQRES 10 B 263 ALA ILE HIS SER ALA CYS ALA SER LEU PHE ALA LYS LYS SEQRES 11 B 263 HIS GLY LYS GLU ASP THR VAL ARG LEU LEU LYS SER GLN SEQRES 12 B 263 THR ARG SER LEU LEU GLN LYS ILE ASP MET ASP SER LYS SEQRES 13 B 263 MET LYS LYS MET ALA GLU LEU GLN LEU SER VAL VAL SER SEQRES 14 B 263 ASP PRO LYS ASN ARG LYS ALA ILE GLU ASN GLN ILE ARG SEQRES 15 B 263 GLN TRP GLU GLN ASN LEU GLU LYS PHE HIS MET ASP LEU SEQRES 16 B 263 PHE ARG MET ARG CYS TYR LEU ALA SER LEU GLN GLY GLY SEQRES 17 B 263 GLU LEU PRO ASN PRO LYS SER LEU LEU ALA ALA THR SER SEQRES 18 B 263 ARG PRO SER LYS LEU ALA LEU GLY ARG LEU GLY VAL LEU SEQRES 19 B 263 SER VAL SER SER PHE HIS ALA LEU VAL CYS SER ARG ASP SEQRES 20 B 263 ASP SER THR LEU ARG LYS ARG THR LEU SER LEU THR GLN SEQRES 21 B 263 ARG GLY LYS SEQRES 1 C 263 GLY PRO LEU GLY SER LYS GLU GLN GLY VAL VAL ARG LYS SEQRES 2 C 263 ALA GLY TRP LEU PHE PHE LYS PRO LEU VAL THR LEU GLN SEQRES 3 C 263 LYS GLU ARG LYS LEU GLU LEU VAL ALA ARG ARG LYS TRP SEQRES 4 C 263 LYS GLN TYR TRP VAL THR LEU LYS GLY CYS THR LEU LEU SEQRES 5 C 263 PHE TYR GLU THR TYR GLY LYS ASN SER THR GLU GLN ASN SEQRES 6 C 263 SER ALA PRO ARG CYS ALA LEU PHE ALA GLU ASP SER ILE SEQRES 7 C 263 VAL GLN SER VAL PRO GLU HIS PRO LYS LYS GLU HIS VAL SEQRES 8 C 263 PHE CYS LEU SER ASN SER CYS GLY ASP VAL TYR LEU PHE SEQRES 9 C 263 GLN ALA THR SER GLN THR ASP LEU GLU ASN TRP VAL THR SEQRES 10 C 263 ALA ILE HIS SER ALA CYS ALA SER LEU PHE ALA LYS LYS SEQRES 11 C 263 HIS GLY LYS GLU ASP THR VAL ARG LEU LEU LYS SER GLN SEQRES 12 C 263 THR ARG SER LEU LEU GLN LYS ILE ASP MET ASP SER LYS SEQRES 13 C 263 MET LYS LYS MET ALA GLU LEU GLN LEU SER VAL VAL SER SEQRES 14 C 263 ASP PRO LYS ASN ARG LYS ALA ILE GLU ASN GLN ILE ARG SEQRES 15 C 263 GLN TRP GLU GLN ASN LEU GLU LYS PHE HIS MET ASP LEU SEQRES 16 C 263 PHE ARG MET ARG CYS TYR LEU ALA SER LEU GLN GLY GLY SEQRES 17 C 263 GLU LEU PRO ASN PRO LYS SER LEU LEU ALA ALA THR SER SEQRES 18 C 263 ARG PRO SER LYS LEU ALA LEU GLY ARG LEU GLY VAL LEU SEQRES 19 C 263 SER VAL SER SER PHE HIS ALA LEU VAL CYS SER ARG ASP SEQRES 20 C 263 ASP SER THR LEU ARG LYS ARG THR LEU SER LEU THR GLN SEQRES 21 C 263 ARG GLY LYS SEQRES 1 D 263 GLY PRO LEU GLY SER LYS GLU GLN GLY VAL VAL ARG LYS SEQRES 2 D 263 ALA GLY TRP LEU PHE PHE LYS PRO LEU VAL THR LEU GLN SEQRES 3 D 263 LYS GLU ARG LYS LEU GLU LEU VAL ALA ARG ARG LYS TRP SEQRES 4 D 263 LYS GLN TYR TRP VAL THR LEU LYS GLY CYS THR LEU LEU SEQRES 5 D 263 PHE TYR GLU THR TYR GLY LYS ASN SER THR GLU GLN ASN SEQRES 6 D 263 SER ALA PRO ARG CYS ALA LEU PHE ALA GLU ASP SER ILE SEQRES 7 D 263 VAL GLN SER VAL PRO GLU HIS PRO LYS LYS GLU HIS VAL SEQRES 8 D 263 PHE CYS LEU SER ASN SER CYS GLY ASP VAL TYR LEU PHE SEQRES 9 D 263 GLN ALA THR SER GLN THR ASP LEU GLU ASN TRP VAL THR SEQRES 10 D 263 ALA ILE HIS SER ALA CYS ALA SER LEU PHE ALA LYS LYS SEQRES 11 D 263 HIS GLY LYS GLU ASP THR VAL ARG LEU LEU LYS SER GLN SEQRES 12 D 263 THR ARG SER LEU LEU GLN LYS ILE ASP MET ASP SER LYS SEQRES 13 D 263 MET LYS LYS MET ALA GLU LEU GLN LEU SER VAL VAL SER SEQRES 14 D 263 ASP PRO LYS ASN ARG LYS ALA ILE GLU ASN GLN ILE ARG SEQRES 15 D 263 GLN TRP GLU GLN ASN LEU GLU LYS PHE HIS MET ASP LEU SEQRES 16 D 263 PHE ARG MET ARG CYS TYR LEU ALA SER LEU GLN GLY GLY SEQRES 17 D 263 GLU LEU PRO ASN PRO LYS SER LEU LEU ALA ALA THR SER SEQRES 18 D 263 ARG PRO SER LYS LEU ALA LEU GLY ARG LEU GLY VAL LEU SEQRES 19 D 263 SER VAL SER SER PHE HIS ALA LEU VAL CYS SER ARG ASP SEQRES 20 D 263 ASP SER THR LEU ARG LYS ARG THR LEU SER LEU THR GLN SEQRES 21 D 263 ARG GLY LYS HELIX 1 1 SER A 602 HIS A 625 1 24 HELIX 2 2 ASP A 629 SER A 660 1 32 HELIX 3 3 ASP A 664 GLY A 701 1 38 HELIX 4 4 ASN A 706 ALA A 712 1 7 HELIX 5 5 SER A 715 LEU A 722 1 8 HELIX 6 6 SER A 729 SER A 739 1 11 HELIX 7 7 SER B 602 HIS B 625 1 24 HELIX 8 8 ASP B 629 SER B 660 1 32 HELIX 9 9 ASP B 664 GLY B 701 1 38 HELIX 10 10 ASN B 706 ALA B 712 1 7 HELIX 11 11 SER B 715 LEU B 722 1 8 HELIX 12 12 SER B 729 SER B 739 1 11 HELIX 13 13 SER C 602 HIS C 625 1 24 HELIX 14 14 ASP C 629 SER C 660 1 32 HELIX 15 15 ASP C 664 GLY C 701 1 38 HELIX 16 16 PRO C 707 ALA C 712 1 6 HELIX 17 17 SER C 715 LEU C 722 1 8 HELIX 18 18 SER C 729 SER C 739 1 11 HELIX 19 19 SER D 602 HIS D 625 1 24 HELIX 20 20 ASP D 629 SER D 660 1 32 HELIX 21 21 ASP D 664 GLY D 701 1 38 HELIX 22 22 PRO D 707 ALA D 712 1 6 HELIX 23 23 SER D 715 LEU D 722 1 8 HELIX 24 24 SER D 729 SER D 739 1 11 SHEET 1 A 7 CYS A 564 PHE A 567 0 SHEET 2 A 7 THR A 544 TYR A 548 -1 N LEU A 545 O LEU A 566 SHEET 3 A 7 LYS A 534 LYS A 541 -1 N LYS A 541 O THR A 544 SHEET 4 A 7 VAL A 505 PHE A 513 -1 N GLY A 509 O VAL A 538 SHEET 5 A 7 TYR A 596 GLN A 599 -1 O GLN A 599 N PHE A 512 SHEET 6 A 7 VAL A 585 SER A 589 -1 N LEU A 588 O TYR A 596 SHEET 7 A 7 ILE A 572 SER A 575 -1 N GLN A 574 O CYS A 587 SHEET 1 B 2 THR A 518 GLN A 520 0 SHEET 2 B 2 LYS A 524 GLU A 526 -1 O GLU A 526 N THR A 518 SHEET 1 C 7 CYS B 564 PHE B 567 0 SHEET 2 C 7 THR B 544 TYR B 548 -1 N LEU B 545 O LEU B 566 SHEET 3 C 7 LYS B 534 LYS B 541 -1 N LYS B 541 O THR B 544 SHEET 4 C 7 VAL B 505 PHE B 513 -1 N GLY B 509 O VAL B 538 SHEET 5 C 7 VAL B 595 GLN B 599 -1 O GLN B 599 N PHE B 512 SHEET 6 C 7 VAL B 585 SER B 589 -1 N LEU B 588 O TYR B 596 SHEET 7 C 7 ILE B 572 SER B 575 -1 N GLN B 574 O CYS B 587 SHEET 1 D 2 THR B 518 GLN B 520 0 SHEET 2 D 2 LYS B 524 GLU B 526 -1 O GLU B 526 N THR B 518 SHEET 1 E 4 LYS C 524 GLU C 526 0 SHEET 2 E 4 VAL C 505 GLN C 520 -1 N THR C 518 O GLU C 526 SHEET 3 E 4 LYS C 534 LYS C 541 -1 O VAL C 538 N GLY C 509 SHEET 4 E 4 THR C 544 TYR C 548 -1 O THR C 544 N LYS C 541 SHEET 1 F 5 LYS C 524 GLU C 526 0 SHEET 2 F 5 VAL C 505 GLN C 520 -1 N THR C 518 O GLU C 526 SHEET 3 F 5 VAL C 595 GLN C 599 -1 O VAL C 595 N VAL C 517 SHEET 4 F 5 VAL C 585 SER C 589 -1 N LEU C 588 O TYR C 596 SHEET 5 F 5 ILE C 572 SER C 575 -1 N GLN C 574 O CYS C 587 SHEET 1 G 7 CYS D 564 PHE D 567 0 SHEET 2 G 7 THR D 544 TYR D 548 -1 N LEU D 545 O LEU D 566 SHEET 3 G 7 LYS D 534 LYS D 541 -1 N LYS D 541 O THR D 544 SHEET 4 G 7 VAL D 505 PHE D 513 -1 N GLY D 509 O VAL D 538 SHEET 5 G 7 VAL D 595 GLN D 599 -1 O GLN D 599 N PHE D 512 SHEET 6 G 7 VAL D 585 SER D 589 -1 N LEU D 588 O TYR D 596 SHEET 7 G 7 ILE D 572 SER D 575 -1 N GLN D 574 O CYS D 587 SHEET 1 H 2 THR D 518 GLN D 520 0 SHEET 2 H 2 LYS D 524 GLU D 526 -1 O GLU D 526 N THR D 518 CRYST1 105.560 105.560 287.580 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009473 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003477 0.00000