HEADER CALCIUM BINDING PROTEIN 07-OCT-09 3A8R TITLE THE STRUCTURE OF THE N-TERMINAL REGULATORY DOMAIN OF A PLANT NADPH TITLE 2 OXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EF-HAND DOMAIN, RESIDUES 138-313; COMPND 5 SYNONYM: RBOHB, OS01G0360200 PROTEIN, RESPIRATORY BURST OXIDASE COMPND 6 PROTEIN B; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: B1164G11.26, OS01G0360200, OSJ_01746; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32C KEYWDS EF-HAND, MEMBRANE, OXIDOREDUCTASE, TRANSMEMBRANE, CALCIUM BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.ODA,H.HASHIMOTO,N.KUWABARA,S.AKASHI,K.HAYASHI,C.KOJIMA,H.L.WONG, AUTHOR 2 T.KAWASAKI,K.SHIMAMOTO,M.SATO,T.SHIMIZU REVDAT 5 13-MAR-24 3A8R 1 REMARK SEQADV LINK REVDAT 4 17-DEC-14 3A8R 1 REMARK REVDAT 3 13-JUL-11 3A8R 1 VERSN REVDAT 2 12-JAN-10 3A8R 1 JRNL REVDAT 1 27-OCT-09 3A8R 0 JRNL AUTH T.ODA,H.HASHIMOTO,N.KUWABARA,S.AKASHI,K.HAYASHI,C.KOJIMA, JRNL AUTH 2 H.L.WONG,T.KAWASAKI,K.SHIMAMOTO,M.SATO,T.SHIMIZU JRNL TITL THE STRUCTURE OF THE N-TERMINAL REGULATORY DOMAIN OF A PLANT JRNL TITL 2 NADPH OXIDASE AND ITS FUNCTIONAL IMPLICATIONS JRNL REF J.BIOL.CHEM. V. 285 1435 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 19864426 JRNL DOI 10.1074/JBC.M109.058909 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0041 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1047 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1194 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2619 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 64.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.46000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : 1.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.319 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.178 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2647 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1828 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3550 ; 1.500 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4463 ; 0.938 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 5.653 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;34.666 ;25.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 514 ;20.606 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;22.960 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2943 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 525 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 15181 ; 0.046 ; 0.200 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 28664 ; 0.037 ; 0.200 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7103 -7.1689 13.1868 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.3176 REMARK 3 T33: 0.2737 T12: -0.0183 REMARK 3 T13: 0.0463 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.5384 L22: 1.0889 REMARK 3 L33: 0.6533 L12: -0.1124 REMARK 3 L13: -0.0379 L23: -0.2957 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.1845 S13: -0.2675 REMARK 3 S21: -0.2569 S22: 0.0382 S23: -0.0881 REMARK 3 S31: 0.1410 S32: -0.1183 S33: -0.0377 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 138 B 304 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8015 17.8031 15.9865 REMARK 3 T TENSOR REMARK 3 T11: 0.0702 T22: 0.2650 REMARK 3 T33: 0.2053 T12: 0.0119 REMARK 3 T13: 0.0935 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.2987 L22: 1.1054 REMARK 3 L33: 0.2574 L12: 0.4390 REMARK 3 L13: -0.1021 L23: -0.4208 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: 0.0408 S13: 0.1340 REMARK 3 S21: -0.1814 S22: 0.0883 S23: -0.0903 REMARK 3 S31: 0.0184 S32: -0.1375 S33: -0.0315 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3A8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000028953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-06; 19-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 90; 90 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; PHOTON FACTORY REMARK 200 BEAMLINE : BL41XU; BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 0.97915, 0.97931, REMARK 200 0.96411 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATORE; REMARK 200 NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20590 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : 0.23400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES-NAOH BUFFER, PH 7.0 REMARK 280 CONTAINING 0.6M SODIUM THIOCYANATE, 13%(W/V) PEG 8000, 10 MM DTT, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.20900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.45100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.08100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.45100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.20900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.08100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 135 REMARK 465 MET A 136 REMARK 465 GLY A 137 REMARK 465 GLN A 304 REMARK 465 SER A 305 REMARK 465 PRO A 306 REMARK 465 SER A 307 REMARK 465 GLU A 308 REMARK 465 ALA A 309 REMARK 465 ALA A 310 REMARK 465 ALA A 311 REMARK 465 ARG A 312 REMARK 465 SER A 313 REMARK 465 ALA B 135 REMARK 465 MET B 136 REMARK 465 GLY B 137 REMARK 465 SER B 305 REMARK 465 PRO B 306 REMARK 465 SER B 307 REMARK 465 GLU B 308 REMARK 465 ALA B 309 REMARK 465 ALA B 310 REMARK 465 ALA B 311 REMARK 465 ARG B 312 REMARK 465 SER B 313 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 181 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 273 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 139 -79.52 -38.89 REMARK 500 ASN A 158 51.82 -148.02 REMARK 500 ASP A 189 -154.73 -108.24 REMARK 500 ASP A 227 99.03 -66.58 REMARK 500 ALA A 279 20.26 -65.08 REMARK 500 GLU A 283 0.80 -67.55 REMARK 500 ASP B 174 37.90 39.89 REMARK 500 GLU B 299 -73.36 -48.37 REMARK 500 LEU B 302 -60.59 -91.79 REMARK 500 LEU B 303 -10.34 -44.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 25 O REMARK 620 2 ASP A 242 OD1 157.1 REMARK 620 3 ASN A 244 OD1 78.2 82.5 REMARK 620 4 ASP A 246 OD1 80.8 83.3 78.2 REMARK 620 5 ARG A 248 O 96.2 97.6 159.6 81.5 REMARK 620 6 GLU A 253 OE1 89.7 98.6 79.1 156.7 120.8 REMARK 620 7 GLU A 253 OE2 78.1 123.2 122.6 145.8 74.4 49.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 68 O REMARK 620 2 ASP B 242 OD1 167.9 REMARK 620 3 ASN B 244 OD1 96.1 80.6 REMARK 620 4 ASP B 246 OD1 92.0 75.9 79.2 REMARK 620 5 ARG B 248 O 103.6 75.9 151.8 80.2 REMARK 620 6 GLU B 253 OE1 77.1 114.7 120.8 157.7 83.6 REMARK 620 7 GLU B 253 OE2 94.6 95.6 72.6 151.6 124.6 50.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 402 DBREF 3A8R A 138 313 UNP Q5ZAJ0 Q5ZAJ0_ORYSJ 138 313 DBREF 3A8R B 138 313 UNP Q5ZAJ0 Q5ZAJ0_ORYSJ 138 313 SEQADV 3A8R ALA A 135 UNP Q5ZAJ0 EXPRESSION TAG SEQADV 3A8R MET A 136 UNP Q5ZAJ0 EXPRESSION TAG SEQADV 3A8R GLY A 137 UNP Q5ZAJ0 EXPRESSION TAG SEQADV 3A8R ALA B 135 UNP Q5ZAJ0 EXPRESSION TAG SEQADV 3A8R MET B 136 UNP Q5ZAJ0 EXPRESSION TAG SEQADV 3A8R GLY B 137 UNP Q5ZAJ0 EXPRESSION TAG SEQRES 1 A 179 ALA MET GLY THR LYS SER SER ALA ALA VAL ALA LEU LYS SEQRES 2 A 179 GLY LEU GLN PHE VAL THR ALA LYS VAL GLY ASN ASP GLY SEQRES 3 A 179 TRP ALA ALA VAL GLU LYS ARG PHE ASN GLN LEU GLN VAL SEQRES 4 A 179 ASP GLY VAL LEU LEU ARG SER ARG PHE GLY LYS CYS ILE SEQRES 5 A 179 GLY MET ASP GLY SER ASP GLU PHE ALA VAL GLN MET PHE SEQRES 6 A 179 ASP SER LEU ALA ARG LYS ARG GLY ILE VAL LYS GLN VAL SEQRES 7 A 179 LEU THR LYS ASP GLU LEU LYS ASP PHE TYR GLU GLN LEU SEQRES 8 A 179 THR ASP GLN GLY PHE ASP ASN ARG LEU ARG THR PHE PHE SEQRES 9 A 179 ASP MET VAL ASP LYS ASN ALA ASP GLY ARG LEU THR ALA SEQRES 10 A 179 GLU GLU VAL LYS GLU ILE ILE ALA LEU SER ALA SER ALA SEQRES 11 A 179 ASN LYS LEU SER LYS ILE LYS GLU ARG ALA ASP GLU TYR SEQRES 12 A 179 THR ALA LEU ILE MET GLU GLU LEU ASP PRO THR ASN LEU SEQRES 13 A 179 GLY TYR ILE GLU MET GLU ASP LEU GLU ALA LEU LEU LEU SEQRES 14 A 179 GLN SER PRO SER GLU ALA ALA ALA ARG SER SEQRES 1 B 179 ALA MET GLY THR LYS SER SER ALA ALA VAL ALA LEU LYS SEQRES 2 B 179 GLY LEU GLN PHE VAL THR ALA LYS VAL GLY ASN ASP GLY SEQRES 3 B 179 TRP ALA ALA VAL GLU LYS ARG PHE ASN GLN LEU GLN VAL SEQRES 4 B 179 ASP GLY VAL LEU LEU ARG SER ARG PHE GLY LYS CYS ILE SEQRES 5 B 179 GLY MET ASP GLY SER ASP GLU PHE ALA VAL GLN MET PHE SEQRES 6 B 179 ASP SER LEU ALA ARG LYS ARG GLY ILE VAL LYS GLN VAL SEQRES 7 B 179 LEU THR LYS ASP GLU LEU LYS ASP PHE TYR GLU GLN LEU SEQRES 8 B 179 THR ASP GLN GLY PHE ASP ASN ARG LEU ARG THR PHE PHE SEQRES 9 B 179 ASP MET VAL ASP LYS ASN ALA ASP GLY ARG LEU THR ALA SEQRES 10 B 179 GLU GLU VAL LYS GLU ILE ILE ALA LEU SER ALA SER ALA SEQRES 11 B 179 ASN LYS LEU SER LYS ILE LYS GLU ARG ALA ASP GLU TYR SEQRES 12 B 179 THR ALA LEU ILE MET GLU GLU LEU ASP PRO THR ASN LEU SEQRES 13 B 179 GLY TYR ILE GLU MET GLU ASP LEU GLU ALA LEU LEU LEU SEQRES 14 B 179 GLN SER PRO SER GLU ALA ALA ALA ARG SER HET CA A 401 1 HET CA B 402 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *77(H2 O) HELIX 1 1 THR A 138 GLY A 157 1 20 HELIX 2 2 GLY A 160 GLN A 172 1 13 HELIX 3 3 ARG A 181 GLY A 187 1 7 HELIX 4 4 SER A 191 ARG A 206 1 16 HELIX 5 5 THR A 214 ASP A 227 1 14 HELIX 6 6 GLY A 229 ASP A 242 1 14 HELIX 7 7 THR A 250 ALA A 264 1 15 HELIX 8 8 ASN A 265 ASP A 286 1 22 HELIX 9 9 GLU A 294 LEU A 303 1 10 HELIX 10 10 THR B 138 GLY B 157 1 20 HELIX 11 11 GLY B 160 GLN B 172 1 13 HELIX 12 12 ARG B 181 GLY B 187 1 7 HELIX 13 13 SER B 191 ARG B 206 1 16 HELIX 14 14 THR B 214 ASP B 227 1 14 HELIX 15 15 GLY B 229 ASP B 242 1 14 HELIX 16 16 ALA B 251 ASP B 286 1 36 HELIX 17 17 GLU B 294 GLN B 304 1 11 SHEET 1 A 2 LEU A 177 LEU A 178 0 SHEET 2 A 2 VAL A 212 LEU A 213 -1 O LEU A 213 N LEU A 177 SHEET 1 B 2 TYR A 292 ILE A 293 0 SHEET 2 B 2 LEU B 249 THR B 250 -1 O LEU B 249 N ILE A 293 SHEET 1 C 2 LEU B 177 LEU B 178 0 SHEET 2 C 2 VAL B 212 LEU B 213 -1 O LEU B 213 N LEU B 177 LINK O HOH A 25 CA CA A 401 1555 1555 2.16 LINK OD1 ASP A 242 CA CA A 401 1555 1555 2.19 LINK OD1 ASN A 244 CA CA A 401 1555 1555 2.42 LINK OD1 ASP A 246 CA CA A 401 1555 1555 2.30 LINK O ARG A 248 CA CA A 401 1555 1555 2.16 LINK OE1 GLU A 253 CA CA A 401 1555 1555 2.48 LINK OE2 GLU A 253 CA CA A 401 1555 1555 2.66 LINK O HOH B 68 CA CA B 402 1555 1555 2.33 LINK OD1 ASP B 242 CA CA B 402 1555 1555 2.21 LINK OD1 ASN B 244 CA CA B 402 1555 1555 2.27 LINK OD1 ASP B 246 CA CA B 402 1555 1555 2.37 LINK O ARG B 248 CA CA B 402 1555 1555 2.38 LINK OE1 GLU B 253 CA CA B 402 1555 1555 2.63 LINK OE2 GLU B 253 CA CA B 402 1555 1555 2.53 SITE 1 AC1 6 HOH A 25 ASP A 242 ASN A 244 ASP A 246 SITE 2 AC1 6 ARG A 248 GLU A 253 SITE 1 AC2 6 HOH B 68 ASP B 242 ASN B 244 ASP B 246 SITE 2 AC2 6 ARG B 248 GLU B 253 CRYST1 60.418 72.162 118.902 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016551 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008410 0.00000