HEADER CHAPERONE 13-NOV-09 3AAC TITLE SMALL HEAT SHOCK PROTEIN HSP14.0 WITH THE MUTATIONS OF I120F AND I122F TITLE 2 IN THE FORM II CRYSTAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN ST1653; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SMALL HEAT SHOCK PROTEIN HSP14.0; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TOKODAII; SOURCE 3 ORGANISM_TAXID: 273063; SOURCE 4 STRAIN: 7; SOURCE 5 GENE: ST1653; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS ALPHA-CRYSTALLIN DOMAIN, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAKEDA,T.HAYASHI,T.ABE,Y.HIRANO,Y.HANAZONO,M.YOHDA,K.MIKI REVDAT 6 13-MAR-24 3AAC 1 REMARK REVDAT 5 25-DEC-19 3AAC 1 REMARK SEQADV REVDAT 4 07-DEC-11 3AAC 1 JRNL REVDAT 3 13-JUL-11 3AAC 1 VERSN REVDAT 2 19-JAN-11 3AAC 1 JRNL REVDAT 1 17-NOV-10 3AAC 0 JRNL AUTH K.TAKEDA,T.HAYASHI,T.ABE,Y.HIRANO,Y.HANAZONO,M.YOHDA,K.MIKI JRNL TITL DIMER STRUCTURE AND CONFORMATIONAL VARIABILITY IN THE JRNL TITL 2 N-TERMINAL REGION OF AN ARCHAEAL SMALL HEAT SHOCK PROTEIN, JRNL TITL 3 STHSP14.0 JRNL REF J.STRUCT.BIOL. V. 174 92 2011 JRNL REFN ISSN 1047-8477 JRNL PMID 21195185 JRNL DOI 10.1016/J.JSB.2010.12.006 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 8988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 51.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 37.50800 REMARK 3 B22 (A**2) : 37.50800 REMARK 3 B33 (A**2) : 21.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 NULL REMARK 3 ANGLE : 0.494 NULL REMARK 3 CHIRALITY : 0.040 NULL REMARK 3 PLANARITY : 0.002 NULL REMARK 3 DIHEDRAL : 10.442 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AAC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000029010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8995 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31100 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% ETHYLENE GLYCOL, 200MM ZINC REMARK 280 ACETATE, 100MM MES, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.86200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.43100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.29300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 TYR B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 TYR A 2 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 3 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 4 CG CD1 CD2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LEU A 8 CG CD1 CD2 REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 THR A 117 OG1 CG2 REMARK 470 SER A 118 OG REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 TYR B 3 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 4 CG CD1 CD2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 GLU B 67 CG CD OE1 OE2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 VAL B 119 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 2 89.33 62.81 REMARK 500 TYR A 3 75.36 64.01 REMARK 500 GLU A 13 -78.22 -95.56 REMARK 500 GLN A 57 -27.90 68.51 REMARK 500 THR A 69 92.69 -69.63 REMARK 500 PRO A 71 -99.01 -64.89 REMARK 500 TYR A 75 -39.29 -138.15 REMARK 500 ALA A 97 108.74 -32.95 REMARK 500 ALA A 115 -139.72 -122.95 REMARK 500 VAL A 119 -155.79 44.94 REMARK 500 PHE A 120 -59.24 -143.92 REMARK 500 PHE A 122 -114.89 -88.79 REMARK 500 GLN B 57 -11.65 70.66 REMARK 500 PRO B 71 -133.90 -55.25 REMARK 500 ILE B 99 95.44 -65.97 REMARK 500 THR B 117 -70.94 -148.07 REMARK 500 PHE B 120 144.41 179.64 REMARK 500 LYS B 121 116.35 69.45 REMARK 500 PHE B 122 -102.26 -97.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AAB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A DIFFERENT CRYSTAL FORM (FORM I) DBREF 3AAC A 1 123 UNP Q970D9 Q970D9_SULTO 1 123 DBREF 3AAC B 1 123 UNP Q970D9 Q970D9_SULTO 1 123 SEQADV 3AAC PHE A 120 UNP Q970D9 ILE 120 ENGINEERED MUTATION SEQADV 3AAC PHE A 122 UNP Q970D9 ILE 122 ENGINEERED MUTATION SEQADV 3AAC PHE B 120 UNP Q970D9 ILE 120 ENGINEERED MUTATION SEQADV 3AAC PHE B 122 UNP Q970D9 ILE 122 ENGINEERED MUTATION SEQRES 1 A 123 MET TYR TYR LEU GLY LYS GLU LEU GLN LYS ARG SER GLU SEQRES 2 A 123 GLU LEU SER ARG GLY PHE TYR GLU LEU VAL TYR PRO PRO SEQRES 3 A 123 VAL ASP MET TYR GLU GLU GLY GLY TYR LEU VAL VAL VAL SEQRES 4 A 123 ALA ASP LEU ALA GLY PHE ASN LYS GLU LYS ILE LYS ALA SEQRES 5 A 123 ARG VAL SER GLY GLN ASN GLU LEU ILE ILE GLU ALA GLU SEQRES 6 A 123 ARG GLU ILE THR GLU PRO GLY VAL LYS TYR LEU THR GLN SEQRES 7 A 123 ARG PRO LYS TYR VAL ARG LYS VAL ILE ARG LEU PRO TYR SEQRES 8 A 123 ASN VAL ALA LYS ASP ALA GLU ILE SER GLY LYS TYR GLU SEQRES 9 A 123 ASN GLY VAL LEU THR ILE ARG ILE PRO ILE ALA GLY THR SEQRES 10 A 123 SER VAL PHE LYS PHE GLU SEQRES 1 B 123 MET TYR TYR LEU GLY LYS GLU LEU GLN LYS ARG SER GLU SEQRES 2 B 123 GLU LEU SER ARG GLY PHE TYR GLU LEU VAL TYR PRO PRO SEQRES 3 B 123 VAL ASP MET TYR GLU GLU GLY GLY TYR LEU VAL VAL VAL SEQRES 4 B 123 ALA ASP LEU ALA GLY PHE ASN LYS GLU LYS ILE LYS ALA SEQRES 5 B 123 ARG VAL SER GLY GLN ASN GLU LEU ILE ILE GLU ALA GLU SEQRES 6 B 123 ARG GLU ILE THR GLU PRO GLY VAL LYS TYR LEU THR GLN SEQRES 7 B 123 ARG PRO LYS TYR VAL ARG LYS VAL ILE ARG LEU PRO TYR SEQRES 8 B 123 ASN VAL ALA LYS ASP ALA GLU ILE SER GLY LYS TYR GLU SEQRES 9 B 123 ASN GLY VAL LEU THR ILE ARG ILE PRO ILE ALA GLY THR SEQRES 10 B 123 SER VAL PHE LYS PHE GLU FORMUL 3 HOH *19(H2 O) HELIX 1 1 TYR A 3 LEU A 15 1 13 HELIX 2 2 LEU A 15 VAL A 23 1 9 HELIX 3 3 ASN A 46 GLU A 48 5 3 HELIX 4 4 TYR B 3 TYR B 24 1 22 HELIX 5 5 ASN B 46 GLU B 48 5 3 SHEET 1 A 5 SER A 100 GLU A 104 0 SHEET 2 A 5 VAL A 107 ILE A 112 -1 O THR A 109 N LYS A 102 SHEET 3 A 5 TYR A 35 ASP A 41 -1 N LEU A 36 O ILE A 112 SHEET 4 A 5 VAL A 27 GLU A 32 -1 N ASP A 28 O VAL A 39 SHEET 5 A 5 LEU B 76 THR B 77 -1 N LEU B 76 O MET A 29 SHEET 1 B 3 ILE A 50 SER A 55 0 SHEET 2 B 3 GLU A 59 GLU A 65 -1 O GLU A 63 N LYS A 51 SHEET 3 B 3 TYR A 82 ARG A 88 -1 O ILE A 87 N LEU A 60 SHEET 1 C 5 LYS A 74 THR A 77 0 SHEET 2 C 5 VAL B 27 GLU B 32 -1 O MET B 29 N TYR A 75 SHEET 3 C 5 TYR B 35 ASP B 41 -1 O VAL B 39 N ASP B 28 SHEET 4 C 5 VAL B 107 PRO B 113 -1 O ILE B 112 N LEU B 36 SHEET 5 C 5 SER B 100 GLU B 104 -1 N LYS B 102 O THR B 109 SHEET 1 D 3 ILE B 50 SER B 55 0 SHEET 2 D 3 GLU B 59 GLU B 65 -1 O GLU B 63 N LYS B 51 SHEET 3 D 3 TYR B 82 ARG B 88 -1 O ILE B 87 N LEU B 60 CISPEP 1 MET A 1 TYR A 2 0 2.23 CISPEP 2 TYR A 24 PRO A 25 0 0.94 CISPEP 3 GLY A 72 VAL A 73 0 5.94 CISPEP 4 ILE A 114 ALA A 115 0 -3.09 CISPEP 5 TYR B 24 PRO B 25 0 -3.24 CRYST1 69.564 69.564 49.724 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014375 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020111 0.00000