HEADER CELL CYCLE/REPLICATION 07-DEC-09 3ABE TITLE STRUCTURE OF HUMAN REV7 IN COMPLEX WITH A HUMAN REV3 FRAGMENT IN A TITLE 2 TETRAGONAL CRYSTAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: REV7, MAD2-LIKE 2, HREV7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA POLYMERASE ZETA CATALYTIC SUBUNIT; COMPND 9 CHAIN: Z; COMPND 10 FRAGMENT: RESIDUES 1847-1898; COMPND 11 SYNONYM: REV3, HREV3; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: REV7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: REV3; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETDUET KEYWDS DNA POLYMERASE, HORMA, DNA REPLICATION, TRANSLESION SYNTHESIS, CELL KEYWDS 2 CYCLE, CELL DIVISION, MITOSIS, DNA DAMAGE, DNA REPAIR, DNA-BINDING, KEYWDS 3 DNA-DIRECTED DNA POLYMERASE, CELL CYCLE-REPLICATION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.HARA,H.HASHIMOTO,Y.MURAKUMO,S.KOBAYASHI,T.KOGAME,S.UNZAI,S.AKASHI, AUTHOR 2 S.TAKEDA,T.SHIMIZU,M.SATO REVDAT 7 20-NOV-24 3ABE 1 REMARK REVDAT 6 01-NOV-23 3ABE 1 REMARK REVDAT 5 10-NOV-21 3ABE 1 REMARK SEQADV REVDAT 4 11-OCT-17 3ABE 1 REMARK REVDAT 3 13-JUL-11 3ABE 1 VERSN REVDAT 2 21-APR-10 3ABE 1 JRNL REVDAT 1 16-FEB-10 3ABE 0 JRNL AUTH K.HARA,H.HASHIMOTO,Y.MURAKUMO,S.KOBAYASHI,T.KOGAME,S.UNZAI, JRNL AUTH 2 S.AKASHI,S.TAKEDA,T.SHIMIZU,M.SATO JRNL TITL CRYSTAL STRUCTURE OF HUMAN REV7 IN COMPLEX WITH A HUMAN REV3 JRNL TITL 2 FRAGMENT AND STRUCTURAL IMPLICATION OF THE INTERACTION JRNL TITL 3 BETWEEN DNA POLYMERASE {ZETA} AND REV1 JRNL REF J.BIOL.CHEM. V. 285 12299 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20164194 JRNL DOI 10.1074/JBC.M109.092403 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 526 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 629 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1746 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.09000 REMARK 3 B22 (A**2) : -5.09000 REMARK 3 B33 (A**2) : 10.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.424 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.298 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.278 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.709 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1701 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1117 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2324 ; 1.782 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2738 ; 4.119 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 214 ; 7.302 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;41.987 ;25.303 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;20.198 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;30.346 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1847 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 296 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 447 ; 0.275 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1188 ; 0.273 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 850 ; 0.213 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 895 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 51 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.043 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.542 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 10 ; 0.368 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.015 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1340 ; 0.900 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 422 ; 0.132 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1780 ; 1.097 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 673 ; 1.590 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 544 ; 2.317 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 210 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0585 17.0467 -16.7999 REMARK 3 T TENSOR REMARK 3 T11: 0.0394 T22: 0.4170 REMARK 3 T33: -0.0969 T12: 0.0060 REMARK 3 T13: 0.0054 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 10.2981 L22: 3.2262 REMARK 3 L33: 3.1311 L12: 0.1436 REMARK 3 L13: 0.1587 L23: -0.5100 REMARK 3 S TENSOR REMARK 3 S11: 0.0834 S12: 1.0071 S13: 0.3473 REMARK 3 S21: -0.2167 S22: -0.0383 S23: -0.1053 REMARK 3 S31: 0.1322 S32: -0.0536 S33: -0.0451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ABE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000029045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11076 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3ABD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 20000, 8% PEG 550 MME, 0.8M REMARK 280 SODIUM FORMATE, 0.1M TRIS-HCL PH 8.5 , VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.26200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.25850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.25850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.63100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.25850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.25850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.89300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.25850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.25850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.63100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.25850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.25850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.89300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.26200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 217 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -15 REMARK 465 GLY C -14 REMARK 465 SER C -13 REMARK 465 SER C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 SER C -5 REMARK 465 GLN C -4 REMARK 465 ASP C -3 REMARK 465 PRO C -2 REMARK 465 ASN C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 THR C 3 REMARK 465 LEU C 4 REMARK 465 THR C 5 REMARK 465 ARG C 6 REMARK 465 GLN C 7 REMARK 465 ASP C 8 REMARK 465 LEU C 9 REMARK 465 ASN C 10 REMARK 465 PRO C 106 REMARK 465 LEU C 107 REMARK 465 LEU C 108 REMARK 465 SER C 109 REMARK 465 SER C 211 REMARK 465 MET Z 1847 REMARK 465 LEU Z 1848 REMARK 465 THR Z 1849 REMARK 465 PRO Z 1850 REMARK 465 THR Z 1851 REMARK 465 PRO Z 1852 REMARK 465 ASP Z 1853 REMARK 465 SER Z 1854 REMARK 465 SER Z 1855 REMARK 465 PRO Z 1856 REMARK 465 ARG Z 1857 REMARK 465 SER Z 1858 REMARK 465 THR Z 1859 REMARK 465 SER Z 1860 REMARK 465 SER Z 1861 REMARK 465 PRO Z 1862 REMARK 465 SER Z 1863 REMARK 465 GLN Z 1864 REMARK 465 SER Z 1865 REMARK 465 LYS Z 1866 REMARK 465 ASN Z 1867 REMARK 465 GLY Z 1868 REMARK 465 SER Z 1869 REMARK 465 PHE Z 1870 REMARK 465 THR Z 1871 REMARK 465 PRO Z 1872 REMARK 465 ARG Z 1873 REMARK 465 THR Z 1874 REMARK 465 ASP Z 1896 REMARK 465 HIS Z 1897 REMARK 465 ASP Z 1898 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE C 11 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLN C 13 CG CD OE1 NE2 REMARK 480 LYS C 44 CG CD CE NZ REMARK 480 LYS C 72 CD CE NZ REMARK 480 LYS C 77 CG CD CE NZ REMARK 480 LYS C 90 CG CD CE NZ REMARK 480 ARG C 93 CG CD NE CZ NH1 NH2 REMARK 480 ASP C 113 CG OD1 OD2 REMARK 480 LEU C 116 CG CD1 CD2 REMARK 480 ARG C 158 CG CD NE CZ NH1 NH2 REMARK 480 ASN C 159 CG OD1 ND2 REMARK 480 LYS C 162 CG CD CE NZ REMARK 480 GLU C 176 CG CD OE1 OE2 REMARK 480 GLN C 177 CG CD OE1 NE2 REMARK 480 ARG C 185 CD NE CZ NH1 NH2 REMARK 480 LYS C 198 CD CE NZ REMARK 480 LYS C 209 CG CD CE NZ REMARK 480 ARG Z 1887 CG CD NE CZ NH1 NH2 REMARK 480 GLU Z 1888 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 72 -63.65 -28.41 REMARK 500 ASP C 89 -169.70 -78.51 REMARK 500 HIS C 92 43.31 108.26 REMARK 500 VAL C 95 -65.21 -95.14 REMARK 500 SER C 111 115.65 91.05 REMARK 500 SER C 112 -162.88 -117.36 REMARK 500 ASP C 113 -71.46 -150.52 REMARK 500 ASP C 134 -33.24 -33.29 REMARK 500 ALA C 135 -6.58 -58.66 REMARK 500 HIS C 139 151.27 -47.51 REMARK 500 ALA C 156 118.22 -27.71 REMARK 500 THR C 157 -35.59 162.87 REMARK 500 ASP C 168 -20.12 82.57 REMARK 500 PHE C 169 77.66 -113.15 REMARK 500 MET C 181 77.66 -178.45 REMARK 500 ASP C 183 -83.51 -58.58 REMARK 500 PRO C 184 -164.27 -108.31 REMARK 500 LEU C 189 -50.93 -134.83 REMARK 500 ARG C 206 126.77 -24.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ABD RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A MONOCLINIC CRYSTAL DBREF 3ABE C 1 211 UNP Q9UI95 MD2L2_HUMAN 1 211 DBREF 3ABE Z 1847 1898 UNP O60673 DPOLZ_HUMAN 1847 1898 SEQADV 3ABE MET C -15 UNP Q9UI95 INITIATING METHIONINE SEQADV 3ABE GLY C -14 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE SER C -13 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE SER C -12 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE HIS C -11 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE HIS C -10 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE HIS C -9 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE HIS C -8 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE HIS C -7 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE HIS C -6 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE SER C -5 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE GLN C -4 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE ASP C -3 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE PRO C -2 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE ASN C -1 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE SER C 0 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABE ALA C 124 UNP Q9UI95 ARG 124 ENGINEERED MUTATION SEQRES 1 C 227 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 C 227 PRO ASN SER MET THR THR LEU THR ARG GLN ASP LEU ASN SEQRES 3 C 227 PHE GLY GLN VAL VAL ALA ASP VAL LEU CYS GLU PHE LEU SEQRES 4 C 227 GLU VAL ALA VAL HIS LEU ILE LEU TYR VAL ARG GLU VAL SEQRES 5 C 227 TYR PRO VAL GLY ILE PHE GLN LYS ARG LYS LYS TYR ASN SEQRES 6 C 227 VAL PRO VAL GLN MET SER CYS HIS PRO GLU LEU ASN GLN SEQRES 7 C 227 TYR ILE GLN ASP THR LEU HIS CYS VAL LYS PRO LEU LEU SEQRES 8 C 227 GLU LYS ASN ASP VAL GLU LYS VAL VAL VAL VAL ILE LEU SEQRES 9 C 227 ASP LYS GLU HIS ARG PRO VAL GLU LYS PHE VAL PHE GLU SEQRES 10 C 227 ILE THR GLN PRO PRO LEU LEU SER ILE SER SER ASP SER SEQRES 11 C 227 LEU LEU SER HIS VAL GLU GLN LEU LEU ALA ALA PHE ILE SEQRES 12 C 227 LEU LYS ILE SER VAL CYS ASP ALA VAL LEU ASP HIS ASN SEQRES 13 C 227 PRO PRO GLY CYS THR PHE THR VAL LEU VAL HIS THR ARG SEQRES 14 C 227 GLU ALA ALA THR ARG ASN MET GLU LYS ILE GLN VAL ILE SEQRES 15 C 227 LYS ASP PHE PRO TRP ILE LEU ALA ASP GLU GLN ASP VAL SEQRES 16 C 227 HIS MET HIS ASP PRO ARG LEU ILE PRO LEU LYS THR MET SEQRES 17 C 227 THR SER ASP ILE LEU LYS MET GLN LEU TYR VAL GLU GLU SEQRES 18 C 227 ARG ALA HIS LYS GLY SER SEQRES 1 Z 52 MET LEU THR PRO THR PRO ASP SER SER PRO ARG SER THR SEQRES 2 Z 52 SER SER PRO SER GLN SER LYS ASN GLY SER PHE THR PRO SEQRES 3 Z 52 ARG THR ALA ASN ILE LEU LYS PRO LEU MET SER PRO PRO SEQRES 4 Z 52 SER ARG GLU GLU ILE MET ALA THR LEU LEU ASP HIS ASP FORMUL 3 HOH *14(H2 O) HELIX 1 1 PHE C 11 ARG C 34 1 24 HELIX 2 2 PRO C 38 GLY C 40 5 3 HELIX 3 3 HIS C 57 LYS C 77 1 21 HELIX 4 4 ASP C 113 LEU C 123 1 11 HELIX 5 5 LEU C 123 CYS C 133 1 11 HELIX 6 6 ASP C 134 VAL C 136 5 3 HELIX 7 7 THR C 157 ILE C 163 1 7 HELIX 8 8 ASP C 175 HIS C 180 1 6 HELIX 9 9 SER Z 1886 ALA Z 1892 1 7 SHEET 1 A 2 PHE C 42 LYS C 47 0 SHEET 2 A 2 VAL C 50 SER C 55 -1 O MET C 54 N GLN C 43 SHEET 1 B 7 TRP C 171 LEU C 173 0 SHEET 2 B 7 ILE Z1877 PRO Z1880 -1 O LYS Z1879 N ILE C 172 SHEET 3 B 7 THR C 145 THR C 152 -1 N VAL C 150 O LEU Z1878 SHEET 4 B 7 VAL C 80 LEU C 88 -1 N GLU C 81 O HIS C 151 SHEET 5 B 7 PRO C 94 THR C 103 -1 O VAL C 95 N ILE C 87 SHEET 6 B 7 LYS C 198 GLU C 205 -1 O GLN C 200 N GLU C 101 SHEET 7 B 7 LEU C 186 THR C 193 -1 N ILE C 187 O VAL C 203 SSBOND 1 CYS C 56 CYS C 56 1555 7555 2.38 CISPEP 1 HIS C 182 ASP C 183 0 20.20 CISPEP 2 ASP C 183 PRO C 184 0 -0.90 CRYST1 76.517 76.517 118.524 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013069 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008437 0.00000