HEADER CELL CYCLE/REPLICATION 07-DEC-09 3ABE
TITLE STRUCTURE OF HUMAN REV7 IN COMPLEX WITH A HUMAN REV3 FRAGMENT IN A
TITLE 2 TETRAGONAL CRYSTAL
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B;
COMPND 3 CHAIN: C;
COMPND 4 SYNONYM: REV7, MAD2-LIKE 2, HREV7;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: DNA POLYMERASE ZETA CATALYTIC SUBUNIT;
COMPND 9 CHAIN: Z;
COMPND 10 FRAGMENT: RESIDUES 1847-1898;
COMPND 11 SYNONYM: REV3, HREV3;
COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: REV7;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUET;
SOURCE 11 MOL_ID: 2;
SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 13 ORGANISM_COMMON: HUMAN;
SOURCE 14 ORGANISM_TAXID: 9606;
SOURCE 15 GENE: REV3;
SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETDUET
KEYWDS DNA POLYMERASE, HORMA, DNA REPLICATION, TRANSLESION SYNTHESIS, CELL
KEYWDS 2 CYCLE, CELL DIVISION, MITOSIS, DNA DAMAGE, DNA REPAIR, DNA-BINDING,
KEYWDS 3 DNA-DIRECTED DNA POLYMERASE, CELL CYCLE-REPLICATION COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR K.HARA,H.HASHIMOTO,Y.MURAKUMO,S.KOBAYASHI,T.KOGAME,S.UNZAI,S.AKASHI,
AUTHOR 2 S.TAKEDA,T.SHIMIZU,M.SATO
REVDAT 7 20-NOV-24 3ABE 1 REMARK
REVDAT 6 01-NOV-23 3ABE 1 REMARK
REVDAT 5 10-NOV-21 3ABE 1 REMARK SEQADV
REVDAT 4 11-OCT-17 3ABE 1 REMARK
REVDAT 3 13-JUL-11 3ABE 1 VERSN
REVDAT 2 21-APR-10 3ABE 1 JRNL
REVDAT 1 16-FEB-10 3ABE 0
JRNL AUTH K.HARA,H.HASHIMOTO,Y.MURAKUMO,S.KOBAYASHI,T.KOGAME,S.UNZAI,
JRNL AUTH 2 S.AKASHI,S.TAKEDA,T.SHIMIZU,M.SATO
JRNL TITL CRYSTAL STRUCTURE OF HUMAN REV7 IN COMPLEX WITH A HUMAN REV3
JRNL TITL 2 FRAGMENT AND STRUCTURAL IMPLICATION OF THE INTERACTION
JRNL TITL 3 BETWEEN DNA POLYMERASE {ZETA} AND REV1
JRNL REF J.BIOL.CHEM. V. 285 12299 2010
JRNL REFN ISSN 0021-9258
JRNL PMID 20164194
JRNL DOI 10.1074/JBC.M109.092403
REMARK 2
REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0019
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 10491
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.242
REMARK 3 R VALUE (WORKING SET) : 0.240
REMARK 3 FREE R VALUE : 0.281
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800
REMARK 3 FREE R VALUE TEST SET COUNT : 526
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67
REMARK 3 REFLECTION IN BIN (WORKING SET) : 629
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 BIN R VALUE (WORKING SET) : 0.3050
REMARK 3 BIN FREE R VALUE SET COUNT : 30
REMARK 3 BIN FREE R VALUE : 0.3220
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1746
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 0
REMARK 3 SOLVENT ATOMS : 14
REMARK 3
REMARK 3 B VALUES.
REMARK 3 B VALUE TYPE : LIKELY RESIDUAL
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.66
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -5.09000
REMARK 3 B22 (A**2) : -5.09000
REMARK 3 B33 (A**2) : 10.18000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.424
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.298
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.278
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.709
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1701 ; 0.018 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): 1117 ; 0.000 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2324 ; 1.782 ; 1.974
REMARK 3 BOND ANGLES OTHERS (DEGREES): 2738 ; 4.119 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 214 ; 7.302 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;41.987 ;25.303
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;20.198 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;30.346 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.083 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1847 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 296 ; 0.008 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 447 ; 0.275 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1188 ; 0.273 ; 0.200
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 850 ; 0.213 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): 895 ; 0.119 ; 0.200
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 51 ; 0.186 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.043 ; 0.200
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.542 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): 10 ; 0.368 ; 0.200
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.015 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1340 ; 0.900 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 422 ; 0.132 ; 1.500
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1780 ; 1.097 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 673 ; 1.590 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 544 ; 2.317 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : C 11 C 210
REMARK 3 ORIGIN FOR THE GROUP (A): 12.0585 17.0467 -16.7999
REMARK 3 T TENSOR
REMARK 3 T11: 0.0394 T22: 0.4170
REMARK 3 T33: -0.0969 T12: 0.0060
REMARK 3 T13: 0.0054 T23: 0.0246
REMARK 3 L TENSOR
REMARK 3 L11: 10.2981 L22: 3.2262
REMARK 3 L33: 3.1311 L12: 0.1436
REMARK 3 L13: 0.1587 L23: -0.5100
REMARK 3 S TENSOR
REMARK 3 S11: 0.0834 S12: 1.0071 S13: 0.3473
REMARK 3 S21: -0.2167 S22: -0.0383 S23: -0.1053
REMARK 3 S31: 0.1322 S32: -0.0536 S33: -0.0451
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 3ABE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-09.
REMARK 100 THE DEPOSITION ID IS D_1000029045.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 07-OCT-07
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PHOTON FACTORY
REMARK 200 BEAMLINE : BL-5A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11076
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : 0.05700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69
REMARK 200 COMPLETENESS FOR SHELL (%) : 81.8
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.31400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB ENTRY 3ABD
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 55.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 20000, 8% PEG 550 MME, 0.8M
REMARK 280 SODIUM FORMATE, 0.1M TRIS-HCL PH 8.5 , VAPOR DIFFUSION, HANGING
REMARK 280 DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.26200
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.25850
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.25850
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.63100
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.25850
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.25850
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.89300
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.25850
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.25850
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.63100
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.25850
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.25850
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.89300
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.26200
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 11220 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, Z
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH C 217 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET C -15
REMARK 465 GLY C -14
REMARK 465 SER C -13
REMARK 465 SER C -12
REMARK 465 HIS C -11
REMARK 465 HIS C -10
REMARK 465 HIS C -9
REMARK 465 HIS C -8
REMARK 465 HIS C -7
REMARK 465 HIS C -6
REMARK 465 SER C -5
REMARK 465 GLN C -4
REMARK 465 ASP C -3
REMARK 465 PRO C -2
REMARK 465 ASN C -1
REMARK 465 SER C 0
REMARK 465 MET C 1
REMARK 465 THR C 2
REMARK 465 THR C 3
REMARK 465 LEU C 4
REMARK 465 THR C 5
REMARK 465 ARG C 6
REMARK 465 GLN C 7
REMARK 465 ASP C 8
REMARK 465 LEU C 9
REMARK 465 ASN C 10
REMARK 465 PRO C 106
REMARK 465 LEU C 107
REMARK 465 LEU C 108
REMARK 465 SER C 109
REMARK 465 SER C 211
REMARK 465 MET Z 1847
REMARK 465 LEU Z 1848
REMARK 465 THR Z 1849
REMARK 465 PRO Z 1850
REMARK 465 THR Z 1851
REMARK 465 PRO Z 1852
REMARK 465 ASP Z 1853
REMARK 465 SER Z 1854
REMARK 465 SER Z 1855
REMARK 465 PRO Z 1856
REMARK 465 ARG Z 1857
REMARK 465 SER Z 1858
REMARK 465 THR Z 1859
REMARK 465 SER Z 1860
REMARK 465 SER Z 1861
REMARK 465 PRO Z 1862
REMARK 465 SER Z 1863
REMARK 465 GLN Z 1864
REMARK 465 SER Z 1865
REMARK 465 LYS Z 1866
REMARK 465 ASN Z 1867
REMARK 465 GLY Z 1868
REMARK 465 SER Z 1869
REMARK 465 PHE Z 1870
REMARK 465 THR Z 1871
REMARK 465 PRO Z 1872
REMARK 465 ARG Z 1873
REMARK 465 THR Z 1874
REMARK 465 ASP Z 1896
REMARK 465 HIS Z 1897
REMARK 465 ASP Z 1898
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 PHE C 11 CG CD1 CD2 CE1 CE2 CZ
REMARK 480 GLN C 13 CG CD OE1 NE2
REMARK 480 LYS C 44 CG CD CE NZ
REMARK 480 LYS C 72 CD CE NZ
REMARK 480 LYS C 77 CG CD CE NZ
REMARK 480 LYS C 90 CG CD CE NZ
REMARK 480 ARG C 93 CG CD NE CZ NH1 NH2
REMARK 480 ASP C 113 CG OD1 OD2
REMARK 480 LEU C 116 CG CD1 CD2
REMARK 480 ARG C 158 CG CD NE CZ NH1 NH2
REMARK 480 ASN C 159 CG OD1 ND2
REMARK 480 LYS C 162 CG CD CE NZ
REMARK 480 GLU C 176 CG CD OE1 OE2
REMARK 480 GLN C 177 CG CD OE1 NE2
REMARK 480 ARG C 185 CD NE CZ NH1 NH2
REMARK 480 LYS C 198 CD CE NZ
REMARK 480 LYS C 209 CG CD CE NZ
REMARK 480 ARG Z 1887 CG CD NE CZ NH1 NH2
REMARK 480 GLU Z 1888 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS C 72 -63.65 -28.41
REMARK 500 ASP C 89 -169.70 -78.51
REMARK 500 HIS C 92 43.31 108.26
REMARK 500 VAL C 95 -65.21 -95.14
REMARK 500 SER C 111 115.65 91.05
REMARK 500 SER C 112 -162.88 -117.36
REMARK 500 ASP C 113 -71.46 -150.52
REMARK 500 ASP C 134 -33.24 -33.29
REMARK 500 ALA C 135 -6.58 -58.66
REMARK 500 HIS C 139 151.27 -47.51
REMARK 500 ALA C 156 118.22 -27.71
REMARK 500 THR C 157 -35.59 162.87
REMARK 500 ASP C 168 -20.12 82.57
REMARK 500 PHE C 169 77.66 -113.15
REMARK 500 MET C 181 77.66 -178.45
REMARK 500 ASP C 183 -83.51 -58.58
REMARK 500 PRO C 184 -164.27 -108.31
REMARK 500 LEU C 189 -50.93 -134.83
REMARK 500 ARG C 206 126.77 -24.09
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3ABD RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN A MONOCLINIC CRYSTAL
DBREF 3ABE C 1 211 UNP Q9UI95 MD2L2_HUMAN 1 211
DBREF 3ABE Z 1847 1898 UNP O60673 DPOLZ_HUMAN 1847 1898
SEQADV 3ABE MET C -15 UNP Q9UI95 INITIATING METHIONINE
SEQADV 3ABE GLY C -14 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE SER C -13 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE SER C -12 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE HIS C -11 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE HIS C -10 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE HIS C -9 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE HIS C -8 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE HIS C -7 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE HIS C -6 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE SER C -5 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE GLN C -4 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE ASP C -3 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE PRO C -2 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE ASN C -1 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE SER C 0 UNP Q9UI95 EXPRESSION TAG
SEQADV 3ABE ALA C 124 UNP Q9UI95 ARG 124 ENGINEERED MUTATION
SEQRES 1 C 227 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP
SEQRES 2 C 227 PRO ASN SER MET THR THR LEU THR ARG GLN ASP LEU ASN
SEQRES 3 C 227 PHE GLY GLN VAL VAL ALA ASP VAL LEU CYS GLU PHE LEU
SEQRES 4 C 227 GLU VAL ALA VAL HIS LEU ILE LEU TYR VAL ARG GLU VAL
SEQRES 5 C 227 TYR PRO VAL GLY ILE PHE GLN LYS ARG LYS LYS TYR ASN
SEQRES 6 C 227 VAL PRO VAL GLN MET SER CYS HIS PRO GLU LEU ASN GLN
SEQRES 7 C 227 TYR ILE GLN ASP THR LEU HIS CYS VAL LYS PRO LEU LEU
SEQRES 8 C 227 GLU LYS ASN ASP VAL GLU LYS VAL VAL VAL VAL ILE LEU
SEQRES 9 C 227 ASP LYS GLU HIS ARG PRO VAL GLU LYS PHE VAL PHE GLU
SEQRES 10 C 227 ILE THR GLN PRO PRO LEU LEU SER ILE SER SER ASP SER
SEQRES 11 C 227 LEU LEU SER HIS VAL GLU GLN LEU LEU ALA ALA PHE ILE
SEQRES 12 C 227 LEU LYS ILE SER VAL CYS ASP ALA VAL LEU ASP HIS ASN
SEQRES 13 C 227 PRO PRO GLY CYS THR PHE THR VAL LEU VAL HIS THR ARG
SEQRES 14 C 227 GLU ALA ALA THR ARG ASN MET GLU LYS ILE GLN VAL ILE
SEQRES 15 C 227 LYS ASP PHE PRO TRP ILE LEU ALA ASP GLU GLN ASP VAL
SEQRES 16 C 227 HIS MET HIS ASP PRO ARG LEU ILE PRO LEU LYS THR MET
SEQRES 17 C 227 THR SER ASP ILE LEU LYS MET GLN LEU TYR VAL GLU GLU
SEQRES 18 C 227 ARG ALA HIS LYS GLY SER
SEQRES 1 Z 52 MET LEU THR PRO THR PRO ASP SER SER PRO ARG SER THR
SEQRES 2 Z 52 SER SER PRO SER GLN SER LYS ASN GLY SER PHE THR PRO
SEQRES 3 Z 52 ARG THR ALA ASN ILE LEU LYS PRO LEU MET SER PRO PRO
SEQRES 4 Z 52 SER ARG GLU GLU ILE MET ALA THR LEU LEU ASP HIS ASP
FORMUL 3 HOH *14(H2 O)
HELIX 1 1 PHE C 11 ARG C 34 1 24
HELIX 2 2 PRO C 38 GLY C 40 5 3
HELIX 3 3 HIS C 57 LYS C 77 1 21
HELIX 4 4 ASP C 113 LEU C 123 1 11
HELIX 5 5 LEU C 123 CYS C 133 1 11
HELIX 6 6 ASP C 134 VAL C 136 5 3
HELIX 7 7 THR C 157 ILE C 163 1 7
HELIX 8 8 ASP C 175 HIS C 180 1 6
HELIX 9 9 SER Z 1886 ALA Z 1892 1 7
SHEET 1 A 2 PHE C 42 LYS C 47 0
SHEET 2 A 2 VAL C 50 SER C 55 -1 O MET C 54 N GLN C 43
SHEET 1 B 7 TRP C 171 LEU C 173 0
SHEET 2 B 7 ILE Z1877 PRO Z1880 -1 O LYS Z1879 N ILE C 172
SHEET 3 B 7 THR C 145 THR C 152 -1 N VAL C 150 O LEU Z1878
SHEET 4 B 7 VAL C 80 LEU C 88 -1 N GLU C 81 O HIS C 151
SHEET 5 B 7 PRO C 94 THR C 103 -1 O VAL C 95 N ILE C 87
SHEET 6 B 7 LYS C 198 GLU C 205 -1 O GLN C 200 N GLU C 101
SHEET 7 B 7 LEU C 186 THR C 193 -1 N ILE C 187 O VAL C 203
SSBOND 1 CYS C 56 CYS C 56 1555 7555 2.38
CISPEP 1 HIS C 182 ASP C 183 0 20.20
CISPEP 2 ASP C 183 PRO C 184 0 -0.90
CRYST1 76.517 76.517 118.524 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013069 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013069 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008437 0.00000