HEADER GENE REGULATION/RNA 22-JAN-10 3ADI TITLE STRUCTURE OF ARABIDOPSIS HYL1 AND ITS MOLECULAR IMPLICATIONS FOR MIRNA TITLE 2 PROCESSING COMPND MOL_ID: 1; COMPND 2 MOLECULE: F21M12.9 PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: HYL1 DSRBD1, UNP RESIDUES 15-84; COMPND 5 SYNONYM: HYPONASTIC LEAVE 1, PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(P*CP*UP*CP*GP*AP*UP*AP*AP*CP*C)-3'); COMPND 9 CHAIN: D; COMPND 10 FRAGMENT: RNA; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: RNA (5'-R(*GP*GP*UP*UP*AP*UP*CP*GP*AP*G)-3'); COMPND 14 CHAIN: E; COMPND 15 FRAGMENT: RNA; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: HYL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC RNA; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: SYNTHETIC RNA KEYWDS HYL1, MIRNA PROCESSING MECHANISM, RNA BINDING PROTEIN, GENE KEYWDS 2 REGULATION-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.YUAN,H.Y.CHEN REVDAT 3 01-NOV-23 3ADI 1 SEQADV REVDAT 2 13-JUL-11 3ADI 1 VERSN REVDAT 1 26-MAY-10 3ADI 0 JRNL AUTH S.W.YANG,H.Y.CHEN,J.YANG,S.MACHIDA,N.H.CHUA,Y.A.YUAN JRNL TITL STRUCTURE OF ARABIDOPSIS HYPONASTIC LEAVES1 AND ITS JRNL TITL 2 MOLECULAR IMPLICATIONS FOR MIRNA PROCESSING JRNL REF STRUCTURE V. 18 594 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20462493 JRNL DOI 10.1016/J.STR.2010.02.006 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 3783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 401 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 255 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1716 REMARK 3 NUCLEIC ACID ATOMS : 422 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.794 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.647 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 83.395 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.824 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2225 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3092 ; 1.619 ; 2.212 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 210 ; 6.875 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;34.657 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;23.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.599 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1525 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1076 ; 0.264 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1441 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 108 ; 0.224 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.236 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1083 ; 0.497 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1713 ; 0.883 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1401 ; 0.937 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1379 ; 1.631 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 84 REMARK 3 RESIDUE RANGE : B 14 B 84 REMARK 3 RESIDUE RANGE : C 14 C 84 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3489 14.2285 -4.5144 REMARK 3 T TENSOR REMARK 3 T11: -0.1729 T22: -0.1011 REMARK 3 T33: -0.0806 T12: 0.0646 REMARK 3 T13: 0.0026 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 1.7219 L22: 1.1726 REMARK 3 L33: 1.8074 L12: 0.3888 REMARK 3 L13: 0.4309 L23: -0.3173 REMARK 3 S TENSOR REMARK 3 S11: 0.1511 S12: -0.3658 S13: 0.0035 REMARK 3 S21: 0.1213 S22: -0.2125 S23: -0.0989 REMARK 3 S31: 0.1410 S32: -0.3722 S33: 0.0615 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ADI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000029117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : 1.54 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3783 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.97500 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1DI2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, AS, CACODYLATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.68850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.53275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.84425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 GLY B 12 REMARK 465 SER B 13 REMARK 465 GLY C 12 REMARK 465 SER C 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C D 1 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 C D 3 O4' - C4' - C3' ANGL. DEV. = -7.5 DEGREES REMARK 500 A D 8 O4' - C4' - C3' ANGL. DEV. = -6.6 DEGREES REMARK 500 A D 8 C1' - O4' - C4' ANGL. DEV. = -4.6 DEGREES REMARK 500 A D 8 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 C D 9 O4' - C4' - C3' ANGL. DEV. = -6.8 DEGREES REMARK 500 C D 9 C1' - O4' - C4' ANGL. DEV. = -4.3 DEGREES REMARK 500 G E 1 C3' - C2' - C1' ANGL. DEV. = -7.0 DEGREES REMARK 500 G E 10 N1 - C6 - O6 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 15 -1.68 -146.04 REMARK 500 LYS A 26 -15.33 -47.14 REMARK 500 LYS A 28 -14.70 60.99 REMARK 500 PRO A 32 123.84 -34.43 REMARK 500 ALA A 78 -68.49 -29.73 REMARK 500 ALA A 83 -16.82 -48.61 REMARK 500 PHE B 16 -57.57 -26.43 REMARK 500 ALA B 24 -72.54 -30.14 REMARK 500 LYS B 28 79.27 42.66 REMARK 500 LYS B 38 75.39 -104.19 REMARK 500 SER B 42 -58.21 26.04 REMARK 500 GLN B 72 -70.69 -53.80 REMARK 500 SER B 73 -62.75 -26.16 REMARK 500 GLU B 81 37.34 -68.56 REMARK 500 LEU B 82 -34.73 -143.39 REMARK 500 LEU C 20 -77.53 -63.60 REMARK 500 GLN C 21 -31.12 -24.06 REMARK 500 ALA C 24 3.62 -69.03 REMARK 500 TYR C 27 -7.28 -141.82 REMARK 500 LYS C 28 83.72 54.79 REMARK 500 GLU C 39 -161.12 -105.71 REMARK 500 SER C 42 -19.02 -45.01 REMARK 500 LYS C 44 51.71 -117.54 REMARK 500 ASP C 54 49.81 39.11 REMARK 500 GLU C 81 36.80 -77.22 REMARK 500 LEU C 82 -71.75 -132.65 REMARK 500 ALA C 83 16.77 -68.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ADG RELATED DB: PDB REMARK 900 RELATED ID: 3ADJ RELATED DB: PDB REMARK 900 RELATED ID: 3ADL RELATED DB: PDB DBREF 3ADI A 15 84 UNP O04492 O04492_ARATH 15 84 DBREF 3ADI B 15 84 UNP O04492 O04492_ARATH 15 84 DBREF 3ADI C 15 84 UNP O04492 O04492_ARATH 15 84 DBREF 3ADI D 1 10 PDB 3ADI 3ADI 1 10 DBREF 3ADI E 1 10 PDB 3ADI 3ADI 1 10 SEQADV 3ADI GLY A 12 UNP O04492 EXPRESSION TAG SEQADV 3ADI SER A 13 UNP O04492 EXPRESSION TAG SEQADV 3ADI HIS A 14 UNP O04492 EXPRESSION TAG SEQADV 3ADI GLY B 12 UNP O04492 EXPRESSION TAG SEQADV 3ADI SER B 13 UNP O04492 EXPRESSION TAG SEQADV 3ADI HIS B 14 UNP O04492 EXPRESSION TAG SEQADV 3ADI GLY C 12 UNP O04492 EXPRESSION TAG SEQADV 3ADI SER C 13 UNP O04492 EXPRESSION TAG SEQADV 3ADI HIS C 14 UNP O04492 EXPRESSION TAG SEQRES 1 A 73 GLY SER HIS VAL PHE LYS SER ARG LEU GLN GLU TYR ALA SEQRES 2 A 73 GLN LYS TYR LYS LEU PRO THR PRO VAL TYR GLU ILE VAL SEQRES 3 A 73 LYS GLU GLY PRO SER HIS LYS SER LEU PHE GLN SER THR SEQRES 4 A 73 VAL ILE LEU ASP GLY VAL ARG TYR ASN SER LEU PRO GLY SEQRES 5 A 73 PHE PHE ASN ARG LYS ALA ALA GLU GLN SER ALA ALA GLU SEQRES 6 A 73 VAL ALA LEU ARG GLU LEU ALA LYS SEQRES 1 B 73 GLY SER HIS VAL PHE LYS SER ARG LEU GLN GLU TYR ALA SEQRES 2 B 73 GLN LYS TYR LYS LEU PRO THR PRO VAL TYR GLU ILE VAL SEQRES 3 B 73 LYS GLU GLY PRO SER HIS LYS SER LEU PHE GLN SER THR SEQRES 4 B 73 VAL ILE LEU ASP GLY VAL ARG TYR ASN SER LEU PRO GLY SEQRES 5 B 73 PHE PHE ASN ARG LYS ALA ALA GLU GLN SER ALA ALA GLU SEQRES 6 B 73 VAL ALA LEU ARG GLU LEU ALA LYS SEQRES 1 C 73 GLY SER HIS VAL PHE LYS SER ARG LEU GLN GLU TYR ALA SEQRES 2 C 73 GLN LYS TYR LYS LEU PRO THR PRO VAL TYR GLU ILE VAL SEQRES 3 C 73 LYS GLU GLY PRO SER HIS LYS SER LEU PHE GLN SER THR SEQRES 4 C 73 VAL ILE LEU ASP GLY VAL ARG TYR ASN SER LEU PRO GLY SEQRES 5 C 73 PHE PHE ASN ARG LYS ALA ALA GLU GLN SER ALA ALA GLU SEQRES 6 C 73 VAL ALA LEU ARG GLU LEU ALA LYS SEQRES 1 D 10 C U C G A U A A C C SEQRES 1 E 10 G G U U A U C G A G HELIX 1 1 VAL A 15 TYR A 27 1 13 HELIX 2 2 ASN A 66 ALA A 83 1 18 HELIX 3 3 VAL B 15 TYR B 27 1 13 HELIX 4 4 PRO B 41 SER B 45 5 5 HELIX 5 5 ASN B 66 LYS B 84 1 19 HELIX 6 6 VAL C 15 GLU C 22 1 8 HELIX 7 7 GLU C 22 TYR C 27 1 6 HELIX 8 8 ASN C 66 GLU C 81 1 16 SHEET 1 A 3 VAL A 33 GLU A 39 0 SHEET 2 A 3 LEU A 46 LEU A 53 -1 O GLN A 48 N VAL A 37 SHEET 3 A 3 VAL A 56 ASN A 59 -1 O TYR A 58 N VAL A 51 SHEET 1 B 3 VAL B 33 LYS B 38 0 SHEET 2 B 3 PHE B 47 LEU B 53 -1 O ILE B 52 N VAL B 33 SHEET 3 B 3 VAL B 56 ASN B 59 -1 O TYR B 58 N VAL B 51 SHEET 1 C 3 VAL C 33 GLU C 39 0 SHEET 2 C 3 LEU C 46 LEU C 53 -1 O LEU C 46 N GLU C 39 SHEET 3 C 3 VAL C 56 ASN C 59 -1 O TYR C 58 N VAL C 51 CRYST1 47.620 47.620 115.377 90.00 90.00 90.00 P 43 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008667 0.00000