HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 04-FEB-10 3AE7 TITLE CRYSTAL STRUCTURE OF PORCINE HEART MITOCHONDRIAL COMPLEX II BOUND WITH TITLE 2 2-IODO-N-(3-ISOPROPOXY-PHENYL)-BENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: FLAVOPROTEIN SUBUNIT OF COMPLEX II, FP; COMPND 6 EC: 1.3.5.1; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, COMPND 9 MITOCHONDRIAL; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: IRON-SULFUR SUBUNIT OF COMPLEX II, IP; COMPND 12 EC: 1.3.5.1; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, COMPND 15 MITOCHONDRIAL; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B LARGE COMPND 18 SUBUNIT, CYBL; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL COMPND 21 SUBUNIT, MITOCHONDRIAL; COMPND 22 CHAIN: D; COMPND 23 FRAGMENT: RESIDUES 57-159; COMPND 24 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B SMALL COMPND 25 SUBUNIT, CYBS, SUCCINATE-UBIQUINONE REDUCTASE MEMBRANE ANCHOR COMPND 26 SUBUNIT, QPS3, CII-4, SUCCINATE DEHYDROGENASE COMPLEX SUBUNIT D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: HEART; SOURCE 6 TISSUE: MUSCLE; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 9 ORGANISM_COMMON: PIG; SOURCE 10 ORGANISM_TAXID: 9823; SOURCE 11 ORGAN: HEART; SOURCE 12 TISSUE: MUSCLE; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 15 ORGANISM_COMMON: PIG; SOURCE 16 ORGANISM_TAXID: 9823; SOURCE 17 ORGAN: HEART; SOURCE 18 TISSUE: MUSCLE; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 21 ORGANISM_COMMON: PIG; SOURCE 22 ORGANISM_TAXID: 9823; SOURCE 23 ORGAN: HEART; SOURCE 24 TISSUE: MUSCLE KEYWDS RESPIRATORY COMPLEX II, INHIBITORS, ELECTRON TRANSPORT, IRON, IRON- KEYWDS 2 SULFUR, METAL-BINDING, MITOCHONDRION, MITOCHONDRION INNER MEMBRANE, KEYWDS 3 OXIDOREDUCTASE, TRANSIT PEPTIDE, TRANSPORT, TRICARBOXYLIC ACID KEYWDS 4 CYCLE, HEME, TRANSMEMBRANE, FAD-BINDING PROTEIN, OXIDOREDUCTASE- KEYWDS 5 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HARADA,T.SASAKI,M.SHINDO,Y.KIDO,D.K.INAOKA,J.OMORI,A.OSANAI, AUTHOR 2 K.SAKAMOTO,J.MAO,S.MATSUOKA,M.INOUE,T.HONMA,A.TANAKA,K.KITA REVDAT 4 01-NOV-23 3AE7 1 REMARK LINK REVDAT 3 11-OCT-17 3AE7 1 REMARK REVDAT 2 05-AUG-15 3AE7 1 JRNL VERSN REVDAT 1 09-FEB-11 3AE7 0 JRNL AUTH D.K.INAOKA,T.SHIBA,D.SATO,E.O.BALOGUN,T.SASAKI,M.NAGAHAMA, JRNL AUTH 2 M.ODA,S.MATSUOKA,J.OHMORI,T.HONMA,M.INOUE,K.KITA,S.HARADA JRNL TITL STRUCTURAL INSIGHTS INTO THE MOLECULAR DESIGN OF FLUTOLANIL JRNL TITL 2 DERIVATIVES TARGETED FOR FUMARATE RESPIRATION OF PARASITE JRNL TITL 3 MITOCHONDRIA JRNL REF INT J MOL SCI V. 16 15287 2015 JRNL REFN ESSN 1422-0067 JRNL PMID 26198225 JRNL DOI 10.3390/IJMS160715287 REMARK 2 REMARK 2 RESOLUTION. 3.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 20118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1077 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 145.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.765 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.587 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 81.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.860 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8821 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11970 ; 0.844 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1088 ; 3.872 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 375 ;33.189 ;23.413 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1469 ;14.857 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;12.043 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1304 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6644 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5410 ; 0.087 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8675 ; 0.156 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3411 ; 0.069 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3278 ; 0.120 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 191 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8520 -17.8930 -17.4100 REMARK 3 T TENSOR REMARK 3 T11: 0.5536 T22: 0.5629 REMARK 3 T33: 0.8826 T12: 0.0686 REMARK 3 T13: 0.0294 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 2.5878 L22: 1.2936 REMARK 3 L33: 3.9478 L12: -0.3418 REMARK 3 L13: -0.0784 L23: 0.7305 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: 0.2716 S13: -0.0428 REMARK 3 S21: 0.0449 S22: 0.0739 S23: -0.0530 REMARK 3 S31: -0.2372 S32: 0.1387 S33: -0.0263 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 192 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5410 -16.1390 -20.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.4153 T22: 0.6593 REMARK 3 T33: 0.8981 T12: 0.1360 REMARK 3 T13: 0.0234 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.8395 L22: 4.4001 REMARK 3 L33: 4.2835 L12: 2.0674 REMARK 3 L13: 0.4171 L23: 1.0641 REMARK 3 S TENSOR REMARK 3 S11: -0.1182 S12: 0.2205 S13: 0.1100 REMARK 3 S21: -0.7414 S22: -0.0124 S23: 0.2082 REMARK 3 S31: -0.6490 S32: -0.5811 S33: 0.1306 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 262 A 354 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4760 8.7620 -24.9950 REMARK 3 T TENSOR REMARK 3 T11: 1.5298 T22: 0.4433 REMARK 3 T33: 1.1238 T12: 0.1249 REMARK 3 T13: 0.0968 T23: 0.1495 REMARK 3 L TENSOR REMARK 3 L11: 1.9738 L22: 2.0643 REMARK 3 L33: -1.3816 L12: -0.8679 REMARK 3 L13: 0.9550 L23: 0.2038 REMARK 3 S TENSOR REMARK 3 S11: -0.1262 S12: 0.2349 S13: 0.5710 REMARK 3 S21: -0.6227 S22: 0.0372 S23: -0.1259 REMARK 3 S31: -0.6720 S32: -0.1859 S33: 0.0890 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 355 A 429 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3140 -13.9510 -11.3520 REMARK 3 T TENSOR REMARK 3 T11: 0.6249 T22: 0.6276 REMARK 3 T33: 0.9548 T12: 0.1174 REMARK 3 T13: 0.0783 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 0.4396 L22: 3.9500 REMARK 3 L33: 0.5203 L12: 0.3434 REMARK 3 L13: 0.3414 L23: 2.0526 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: -0.0438 S13: 0.2152 REMARK 3 S21: -0.0788 S22: -0.0167 S23: 0.0690 REMARK 3 S31: -0.2231 S32: -0.0421 S33: -0.0701 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 430 A 511 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1770 -15.3110 -20.6290 REMARK 3 T TENSOR REMARK 3 T11: 0.3655 T22: 1.0153 REMARK 3 T33: 0.7026 T12: 0.1964 REMARK 3 T13: 0.0824 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 2.7096 L22: 4.3838 REMARK 3 L33: 2.1424 L12: -0.2472 REMARK 3 L13: -0.1889 L23: -0.1875 REMARK 3 S TENSOR REMARK 3 S11: -0.1705 S12: 0.3868 S13: -0.0234 REMARK 3 S21: 0.2461 S22: 0.1484 S23: 0.6902 REMARK 3 S31: -0.1944 S32: -0.9696 S33: 0.0221 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 512 A 622 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6490 -6.3540 -5.0150 REMARK 3 T TENSOR REMARK 3 T11: 0.6680 T22: 0.5442 REMARK 3 T33: 0.9250 T12: 0.2352 REMARK 3 T13: 0.0688 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 1.5779 L22: 0.9866 REMARK 3 L33: 3.8372 L12: 0.5307 REMARK 3 L13: -0.4375 L23: 0.0305 REMARK 3 S TENSOR REMARK 3 S11: 0.1232 S12: -0.2923 S13: 0.4466 REMARK 3 S21: 0.2976 S22: -0.2235 S23: 0.2948 REMARK 3 S31: -0.8342 S32: -0.6932 S33: 0.1003 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0130 -11.8980 -46.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.5476 T22: 1.0473 REMARK 3 T33: 0.8052 T12: 0.1847 REMARK 3 T13: -0.0202 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 1.4018 L22: 2.7166 REMARK 3 L33: 5.0539 L12: -0.4363 REMARK 3 L13: 0.3336 L23: -1.2014 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: 0.8534 S13: 0.4551 REMARK 3 S21: -0.1777 S22: -0.0195 S23: 0.0538 REMARK 3 S31: -0.3757 S32: -0.9494 S33: 0.0671 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 107 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7730 -24.0980 -39.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.7469 T22: 0.4744 REMARK 3 T33: 0.9866 T12: 0.0034 REMARK 3 T13: -0.0038 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 2.7763 L22: -0.2102 REMARK 3 L33: 4.5813 L12: 0.5262 REMARK 3 L13: -2.3423 L23: 0.8352 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: 0.1329 S13: 0.0367 REMARK 3 S21: 0.0685 S22: 0.0397 S23: -0.2211 REMARK 3 S31: 0.2741 S32: 0.3495 S33: 0.0070 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 35 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1390 -30.9910 -47.2770 REMARK 3 T TENSOR REMARK 3 T11: 0.6141 T22: 0.7872 REMARK 3 T33: 0.7978 T12: -0.0422 REMARK 3 T13: 0.1582 T23: -0.1557 REMARK 3 L TENSOR REMARK 3 L11: 4.3714 L22: 13.5938 REMARK 3 L33: 4.8147 L12: -3.3705 REMARK 3 L13: 2.3456 L23: -1.0706 REMARK 3 S TENSOR REMARK 3 S11: 0.1428 S12: 0.1136 S13: -0.2584 REMARK 3 S21: -0.7120 S22: -0.4924 S23: 0.0004 REMARK 3 S31: 0.3660 S32: -0.3752 S33: 0.3497 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 36 C 63 REMARK 3 ORIGIN FOR THE GROUP (A): 28.9350 -26.8860 -71.4100 REMARK 3 T TENSOR REMARK 3 T11: 2.0502 T22: 0.1294 REMARK 3 T33: 1.0652 T12: 0.0307 REMARK 3 T13: 0.0171 T23: 0.1102 REMARK 3 L TENSOR REMARK 3 L11: 5.1198 L22: -4.8800 REMARK 3 L33: 3.6552 L12: 1.3669 REMARK 3 L13: 4.2330 L23: -5.2146 REMARK 3 S TENSOR REMARK 3 S11: -0.8696 S12: -0.5933 S13: -0.3434 REMARK 3 S21: -1.2228 S22: -0.0502 S23: 1.3902 REMARK 3 S31: -0.8537 S32: 0.2885 S33: 0.9198 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 64 C 89 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0240 -29.3570 -93.4750 REMARK 3 T TENSOR REMARK 3 T11: 1.5560 T22: 1.0771 REMARK 3 T33: 0.9621 T12: 0.0737 REMARK 3 T13: 0.0115 T23: -0.1715 REMARK 3 L TENSOR REMARK 3 L11: 0.1743 L22: -3.4725 REMARK 3 L33: 6.7318 L12: 2.3772 REMARK 3 L13: -2.8030 L23: -0.4683 REMARK 3 S TENSOR REMARK 3 S11: -0.2827 S12: 0.4991 S13: 0.0395 REMARK 3 S21: -0.1557 S22: 0.0801 S23: 0.3104 REMARK 3 S31: -0.4200 S32: -0.2564 S33: 0.2026 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 90 C 120 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4620 -17.4290 -66.6090 REMARK 3 T TENSOR REMARK 3 T11: 0.8575 T22: 0.4269 REMARK 3 T33: 0.8967 T12: -0.0317 REMARK 3 T13: 0.1512 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.8447 L22: 5.2479 REMARK 3 L33: 10.6785 L12: -1.9245 REMARK 3 L13: -6.6734 L23: 3.1884 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: -0.0495 S13: 0.1961 REMARK 3 S21: -0.5745 S22: -0.1417 S23: -0.5142 REMARK 3 S31: -0.6253 S32: -0.4705 S33: 0.0294 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 121 C 143 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0260 -10.8750 -71.7750 REMARK 3 T TENSOR REMARK 3 T11: 1.6125 T22: 0.1332 REMARK 3 T33: 1.0925 T12: 0.1949 REMARK 3 T13: 0.3339 T23: 0.1375 REMARK 3 L TENSOR REMARK 3 L11: 10.5624 L22: 3.6979 REMARK 3 L33: 30.8921 L12: 3.9017 REMARK 3 L13: -15.0950 L23: 3.3716 REMARK 3 S TENSOR REMARK 3 S11: -0.5181 S12: -0.2884 S13: -0.7357 REMARK 3 S21: -0.1893 S22: -0.3277 S23: -0.5559 REMARK 3 S31: 1.7900 S32: -0.3386 S33: 0.8458 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 35 D 96 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5420 -31.9120 -65.4590 REMARK 3 T TENSOR REMARK 3 T11: 0.8086 T22: 0.3792 REMARK 3 T33: 0.9045 T12: 0.0113 REMARK 3 T13: 0.1825 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 5.4905 L22: 3.6619 REMARK 3 L33: 4.4107 L12: -0.6657 REMARK 3 L13: -1.2704 L23: 0.2920 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: -0.4669 S13: -0.4653 REMARK 3 S21: -0.5571 S22: -0.1697 S23: -0.2285 REMARK 3 S31: 0.0020 S32: 0.4546 S33: 0.1358 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 97 D 136 REMARK 3 ORIGIN FOR THE GROUP (A): 38.7710 -37.1020 -78.5720 REMARK 3 T TENSOR REMARK 3 T11: 1.8150 T22: 0.5588 REMARK 3 T33: 0.9976 T12: -0.0218 REMARK 3 T13: 0.4684 T23: -0.1989 REMARK 3 L TENSOR REMARK 3 L11: 4.3458 L22: 1.6110 REMARK 3 L33: 1.7755 L12: 0.0731 REMARK 3 L13: 2.1932 L23: -2.5706 REMARK 3 S TENSOR REMARK 3 S11: 0.6388 S12: 0.2865 S13: 0.0952 REMARK 3 S21: 0.1437 S22: -0.7737 S23: -0.0650 REMARK 3 S31: -0.7291 S32: 0.3810 S33: 0.1349 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3AE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000029141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20323 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1430 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM HEPES-NAOH, 6% PEG 4000, 200MM REMARK 280 SUCROSE, 100MM NACL, 10MM CACL2, 0.5MM EDTA, 3% 1,6-HAXANEDIOL, REMARK 280 0.5% N-DECYL-BETA-D-MALTOSIDE, PH 7.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.58750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.84550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.99400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 146.84550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.58750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.99400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THESE COMPLEX FORMS MITOCHONDRIAL RESPIRATORY COMPLEX II. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 ALA B 8 REMARK 465 LYS B 248 REMARK 465 LYS B 249 REMARK 465 ALA B 250 REMARK 465 SER B 251 REMARK 465 ALA B 252 REMARK 465 LEU C 4 REMARK 465 GLY C 5 REMARK 465 ALA D 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 11 -23.51 65.67 REMARK 500 PRO A 53 -39.19 -39.35 REMARK 500 THR A 121 -167.91 -113.00 REMARK 500 VAL A 150 56.69 -110.45 REMARK 500 ALA A 151 72.55 44.92 REMARK 500 ASP A 152 -4.60 66.85 REMARK 500 PRO A 290 -81.57 -65.89 REMARK 500 VAL A 291 52.07 -104.69 REMARK 500 ALA A 292 -36.95 -141.74 REMARK 500 LYS A 293 -145.25 59.48 REMARK 500 ARG A 313 32.81 -96.73 REMARK 500 HIS A 365 -57.41 -133.36 REMARK 500 ASN A 374 -177.10 -69.38 REMARK 500 CYS A 433 118.28 63.86 REMARK 500 PHE A 459 47.54 -100.06 REMARK 500 ALA A 482 -155.45 -85.19 REMARK 500 ARG A 512 56.43 -118.48 REMARK 500 TRP A 516 75.87 43.58 REMARK 500 LYS A 544 63.71 -112.57 REMARK 500 GLN A 569 -41.53 -164.50 REMARK 500 ILE B 55 -69.01 -91.44 REMARK 500 SER B 64 -84.21 -156.76 REMARK 500 CYS B 73 36.02 -77.37 REMARK 500 LYS B 109 120.67 -174.15 REMARK 500 ASP B 110 92.49 44.65 REMARK 500 LEU B 111 8.16 59.43 REMARK 500 GLU B 126 81.17 58.34 REMARK 500 LEU B 155 -43.70 -137.01 REMARK 500 GLN B 207 26.37 -78.82 REMARK 500 SER C 22 -169.18 -119.42 REMARK 500 HIS C 29 -60.27 -124.45 REMARK 500 LEU C 82 83.47 45.59 REMARK 500 ALA C 142 62.82 -100.45 REMARK 500 ASP D 123 -157.48 -109.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 FES B 302 S1 114.2 REMARK 620 3 FES B 302 S2 132.7 90.4 REMARK 620 4 CYS B 70 SG 100.1 115.0 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 73 SG REMARK 620 2 FES B 302 S1 137.3 REMARK 620 3 FES B 302 S2 121.3 90.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 158 SG REMARK 620 2 SF4 B 303 S1 106.7 REMARK 620 3 SF4 B 303 S2 124.2 105.0 REMARK 620 4 SF4 B 303 S3 109.0 105.6 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 SF4 B 303 S2 116.9 REMARK 620 3 SF4 B 303 S3 109.5 105.1 REMARK 620 4 SF4 B 303 S4 114.3 104.9 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 164 SG REMARK 620 2 SF4 B 303 S1 111.7 REMARK 620 3 SF4 B 303 S3 116.2 105.6 REMARK 620 4 SF4 B 303 S4 112.3 105.1 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 221 SG REMARK 620 2 F3S B 304 S1 136.2 REMARK 620 3 F3S B 304 S2 106.9 105.6 REMARK 620 4 F3S B 304 S3 100.5 101.4 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 225 SG REMARK 620 2 SF4 B 303 S1 128.1 REMARK 620 3 SF4 B 303 S2 113.2 105.1 REMARK 620 4 SF4 B 303 S4 97.8 105.1 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C1305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 101 NE2 REMARK 620 2 HEM C1305 NA 86.2 REMARK 620 3 HEM C1305 NB 99.9 88.7 REMARK 620 4 HEM C1305 NC 93.3 177.2 88.7 REMARK 620 5 HEM C1305 ND 84.0 91.3 176.0 91.4 REMARK 620 6 HIS D 79 NE2 166.1 87.9 92.4 93.2 83.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 12J B 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ABV RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEA RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEB RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AED RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEE RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEF RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH AN EMPTY QUINONE-BINDING POCKET REMARK 900 RELATED ID: 3AEG RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF CHAIN D IS REFERRED IN REF 2 IN A5GZW8, UNIPROT. DBREF 3AE7 A 1 622 UNP Q0QF01 DHSA_PIG 43 664 DBREF 3AE7 B 1 252 UNP Q007T0 DHSB_PIG 29 280 DBREF 3AE7 C 4 143 UNP D0VWV4 C560_PIG 30 169 DBREF 3AE7 D 34 136 UNP A5GZW8 DHSD_PIG 57 159 SEQRES 1 A 622 SER SER ALA LYS VAL SER ASP ALA ILE SER THR GLN TYR SEQRES 2 A 622 PRO VAL VAL ASP HIS GLU PHE ASP ALA VAL VAL VAL GLY SEQRES 3 A 622 ALA GLY GLY ALA GLY LEU ARG ALA ALA PHE GLY LEU SER SEQRES 4 A 622 GLU ALA GLY PHE ASN THR ALA CYS VAL THR LYS LEU PHE SEQRES 5 A 622 PRO THR ARG SER HIS THR VAL ALA ALA GLN GLY GLY ILE SEQRES 6 A 622 ASN ALA ALA LEU GLY ASN MET GLU GLU ASP ASN TRP ARG SEQRES 7 A 622 TRP HIS PHE TYR ASP THR VAL LYS GLY SER ASP TRP LEU SEQRES 8 A 622 GLY ASP GLN ASP ALA ILE HIS TYR MET THR GLU GLN ALA SEQRES 9 A 622 PRO ALA SER VAL VAL GLU LEU GLU ASN TYR GLY MET PRO SEQRES 10 A 622 PHE SER ARG THR GLU ASP GLY LYS ILE TYR GLN ARG ALA SEQRES 11 A 622 PHE GLY GLY GLN SER LEU LYS PHE GLY LYS GLY GLY GLN SEQRES 12 A 622 ALA HIS ARG CYS CYS CYS VAL ALA ASP ARG THR GLY HIS SEQRES 13 A 622 SER LEU LEU HIS THR LEU TYR GLY ARG SER LEU ARG TYR SEQRES 14 A 622 ASP THR SER TYR PHE VAL GLU TYR PHE ALA LEU ASP LEU SEQRES 15 A 622 LEU MET GLU ASN GLY GLU CYS ARG GLY VAL ILE ALA LEU SEQRES 16 A 622 CYS ILE GLU ASP GLY SER ILE HIS ARG ILE ARG ALA ARG SEQRES 17 A 622 ASN THR VAL VAL ALA THR GLY GLY TYR GLY ARG THR TYR SEQRES 18 A 622 PHE SER CYS THR SER ALA HIS THR SER THR GLY ASP GLY SEQRES 19 A 622 THR ALA MET VAL THR ARG ALA GLY LEU PRO CYS GLN ASP SEQRES 20 A 622 LEU GLU PHE VAL GLN PHE HIS PRO THR GLY ILE TYR GLY SEQRES 21 A 622 ALA GLY CYS LEU ILE THR GLU GLY CYS ARG GLY GLU GLY SEQRES 22 A 622 GLY ILE LEU ILE ASN SER GLN GLY GLU ARG PHE MET GLU SEQRES 23 A 622 ARG TYR ALA PRO VAL ALA LYS ASP LEU ALA SER ARG ASP SEQRES 24 A 622 VAL VAL SER ARG SER MET THR LEU GLU ILE ARG GLU GLY SEQRES 25 A 622 ARG GLY CYS GLY PRO GLU LYS ASP HIS VAL TYR LEU GLN SEQRES 26 A 622 LEU HIS HIS LEU PRO PRO GLU GLN LEU ALA VAL ARG LEU SEQRES 27 A 622 PRO GLY ILE SER GLU THR ALA MET ILE PHE ALA GLY VAL SEQRES 28 A 622 ASP VAL THR LYS GLU PRO ILE PRO VAL LEU PRO THR VAL SEQRES 29 A 622 HIS TYR ASN MET GLY GLY ILE PRO THR ASN TYR LYS GLY SEQRES 30 A 622 GLN VAL LEU ARG HIS VAL ASN GLY GLN ASP GLN VAL VAL SEQRES 31 A 622 PRO GLY LEU TYR ALA CYS GLY GLU ALA ALA CYS ALA SER SEQRES 32 A 622 VAL HIS GLY ALA ASN ARG LEU GLY ALA ASN SER LEU LEU SEQRES 33 A 622 ASP LEU VAL VAL PHE GLY ARG ALA CYS ALA LEU SER ILE SEQRES 34 A 622 ALA GLU SER CYS ARG PRO GLY ASP LYS VAL PRO SER ILE SEQRES 35 A 622 LYS PRO ASN ALA GLY GLU GLU SER VAL MET ASN LEU ASP SEQRES 36 A 622 LYS LEU ARG PHE ALA ASN GLY THR ILE ARG THR SER GLU SEQRES 37 A 622 LEU ARG LEU SER MET GLN LYS SER MET GLN SER HIS ALA SEQRES 38 A 622 ALA VAL PHE ARG VAL GLY SER VAL LEU GLN GLU GLY CYS SEQRES 39 A 622 GLU LYS ILE LEU ARG LEU TYR GLY ASP LEU GLN HIS LEU SEQRES 40 A 622 LYS THR PHE ASP ARG GLY MET VAL TRP ASN THR ASP LEU SEQRES 41 A 622 VAL GLU THR LEU GLU LEU GLN ASN LEU MET LEU CYS ALA SEQRES 42 A 622 LEU GLN THR ILE TYR GLY ALA GLU ALA ARG LYS GLU SER SEQRES 43 A 622 ARG GLY ALA HIS ALA ARG GLU ASP PHE LYS GLU ARG VAL SEQRES 44 A 622 ASP GLU TYR ASP TYR SER LYS PRO ILE GLN GLY GLN GLN SEQRES 45 A 622 LYS LYS PRO PHE GLN GLU HIS TRP ARG LYS HIS THR LEU SEQRES 46 A 622 SER TYR VAL ASP VAL LYS THR GLY LYS VAL SER LEU GLU SEQRES 47 A 622 TYR ARG PRO VAL ILE ASP LYS THR LEU ASN GLU ALA ASP SEQRES 48 A 622 CYS ALA THR VAL PRO PRO ALA ILE ARG SER TYR SEQRES 1 B 252 ALA GLN THR ALA ALA ALA THR ALA PRO ARG ILE LYS LYS SEQRES 2 B 252 PHE ALA ILE TYR ARG TRP ASP PRO ASP LYS THR GLY ASP SEQRES 3 B 252 LYS PRO HIS MET GLN THR TYR GLU ILE ASP LEU ASN ASN SEQRES 4 B 252 CYS GLY PRO MET VAL LEU ASP ALA LEU ILE LYS ILE LYS SEQRES 5 B 252 ASN GLU ILE ASP SER THR LEU THR PHE ARG ARG SER CYS SEQRES 6 B 252 ARG GLU GLY ILE CYS GLY SER CYS ALA MET ASN ILE ASN SEQRES 7 B 252 GLY GLY ASN THR LEU ALA CYS THR ARG ARG ILE ASP THR SEQRES 8 B 252 ASN LEU ASP LYS VAL SER LYS ILE TYR PRO LEU PRO HIS SEQRES 9 B 252 MET TYR VAL ILE LYS ASP LEU VAL PRO ASP LEU SER ASN SEQRES 10 B 252 PHE TYR ALA GLN TYR LYS SER ILE GLU PRO TYR LEU LYS SEQRES 11 B 252 LYS LYS ASP GLU SER GLN GLU GLY LYS GLN GLN TYR LEU SEQRES 12 B 252 GLN SER ILE GLU GLU ARG GLU LYS LEU ASP GLY LEU TYR SEQRES 13 B 252 GLU CYS ILE LEU CYS ALA CYS CYS SER THR SER CYS PRO SEQRES 14 B 252 SER TYR TRP TRP ASN GLY ASP LYS TYR LEU GLY PRO ALA SEQRES 15 B 252 VAL LEU MET GLN ALA TYR ARG TRP MET ILE ASP SER ARG SEQRES 16 B 252 ASP ASP PHE THR GLU GLU ARG LEU ALA LYS LEU GLN ASP SEQRES 17 B 252 PRO PHE SER LEU TYR ARG CYS HIS THR ILE MET ASN CYS SEQRES 18 B 252 THR GLY THR CYS PRO LYS GLY LEU ASN PRO GLY LYS ALA SEQRES 19 B 252 ILE ALA GLU ILE LYS LYS MET MET ALA THR TYR LYS GLU SEQRES 20 B 252 LYS LYS ALA SER ALA SEQRES 1 C 140 LEU GLY THR THR ALA LYS GLU GLU MET GLU ARG PHE TRP SEQRES 2 C 140 ASN LYS ASN LEU GLY SER ASN ARG PRO LEU SER PRO HIS SEQRES 3 C 140 ILE THR ILE TYR ARG TRP SER LEU PRO MET ALA MET SER SEQRES 4 C 140 ILE CYS HIS ARG GLY THR GLY ILE ALA LEU SER ALA GLY SEQRES 5 C 140 VAL SER LEU PHE GLY LEU SER ALA LEU LEU LEU PRO GLY SEQRES 6 C 140 ASN PHE GLU SER HIS LEU GLU LEU VAL LYS SER LEU CYS SEQRES 7 C 140 LEU GLY PRO THR LEU ILE TYR THR ALA LYS PHE GLY ILE SEQRES 8 C 140 VAL PHE PRO LEU MET TYR HIS THR TRP ASN GLY ILE ARG SEQRES 9 C 140 HIS LEU ILE TRP ASP LEU GLY LYS GLY LEU THR ILE PRO SEQRES 10 C 140 GLN LEU THR GLN SER GLY VAL VAL VAL LEU ILE LEU THR SEQRES 11 C 140 VAL LEU SER SER VAL GLY LEU ALA ALA MET SEQRES 1 D 103 ALA SER SER LYS ALA ALA SER LEU HIS TRP THR GLY GLU SEQRES 2 D 103 ARG VAL VAL SER VAL LEU LEU LEU GLY LEU LEU PRO ALA SEQRES 3 D 103 ALA TYR LEU ASN PRO CYS SER ALA MET ASP TYR SER LEU SEQRES 4 D 103 ALA ALA ALA LEU THR LEU HIS GLY HIS TRP GLY ILE GLY SEQRES 5 D 103 GLN VAL VAL THR ASP TYR VAL ARG GLY ASP ALA LEU GLN SEQRES 6 D 103 LYS ALA ALA LYS ALA GLY LEU LEU ALA LEU SER ALA PHE SEQRES 7 D 103 THR PHE ALA GLY LEU CYS TYR PHE ASN TYR HIS ASP VAL SEQRES 8 D 103 GLY ILE CYS LYS ALA VAL ALA MET LEU TRP LYS LEU HET FAD A 700 53 HET FES B 302 4 HET SF4 B 303 8 HET F3S B 304 7 HET 12J B1201 20 HET HEM C1305 43 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM 12J 2-IODO-N-[3-(1-METHYLETHOXY)PHENYL]BENZAMIDE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN 12J 2-IODO-N-(3-ISOPROPOXYPHENYL)BENZAMIDE HETSYN HEM HEME FORMUL 5 FAD C27 H33 N9 O15 P2 FORMUL 6 FES FE2 S2 FORMUL 7 SF4 FE4 S4 FORMUL 8 F3S FE3 S4 FORMUL 9 12J C16 H16 I N O2 FORMUL 10 HEM C34 H32 FE N4 O4 HELIX 1 1 GLY A 28 GLY A 42 1 15 HELIX 2 2 PHE A 52 ALA A 61 5 10 HELIX 3 3 ASN A 76 SER A 88 1 13 HELIX 4 4 ASP A 93 GLN A 103 1 11 HELIX 5 5 GLN A 103 GLY A 115 1 13 HELIX 6 6 ARG A 153 LEU A 167 1 15 HELIX 7 7 TYR A 217 TYR A 221 5 5 HELIX 8 8 GLY A 232 ALA A 241 1 10 HELIX 9 9 PHE A 284 ALA A 289 1 6 HELIX 10 10 ALA A 292 ALA A 296 5 5 HELIX 11 11 SER A 297 GLY A 312 1 16 HELIX 12 12 PRO A 330 LEU A 338 1 9 HELIX 13 13 LEU A 338 PHE A 348 1 11 HELIX 14 14 ASN A 413 SER A 432 1 20 HELIX 15 15 GLY A 447 PHE A 459 1 13 HELIX 16 16 THR A 466 ALA A 481 1 16 HELIX 17 17 VAL A 486 ASP A 503 1 18 HELIX 18 18 ASN A 517 ARG A 543 1 27 HELIX 19 19 MET B 43 GLU B 54 1 12 HELIX 20 20 LEU B 115 ILE B 125 1 11 HELIX 21 21 SER B 145 LYS B 151 1 7 HELIX 22 22 CYS B 168 ASN B 174 1 7 HELIX 23 23 GLY B 180 TRP B 190 1 11 HELIX 24 24 PHE B 198 ALA B 204 1 7 HELIX 25 25 LYS B 205 GLN B 207 5 3 HELIX 26 26 ASN B 230 THR B 244 1 15 HELIX 27 27 THR C 7 LEU C 20 1 14 HELIX 28 28 SER C 36 LEU C 66 1 31 HELIX 29 29 ASN C 69 LYS C 78 1 10 HELIX 30 30 SER C 79 CYS C 81 5 3 HELIX 31 31 GLY C 83 GLY C 114 1 32 HELIX 32 32 THR C 118 ALA C 142 1 25 HELIX 33 33 ALA D 38 ASN D 63 1 26 HELIX 34 34 CYS D 65 VAL D 92 1 28 HELIX 35 35 GLY D 94 HIS D 122 1 29 HELIX 36 36 GLY D 125 LYS D 135 1 11 SHEET 1 A 6 SER A 172 VAL A 175 0 SHEET 2 A 6 THR A 45 THR A 49 1 N CYS A 47 O SER A 172 SHEET 3 A 6 VAL A 15 VAL A 25 1 N VAL A 24 O ALA A 46 SHEET 4 A 6 ILE A 202 VAL A 212 1 O VAL A 211 N VAL A 23 SHEET 5 A 6 CYS A 189 CYS A 196 -1 N ALA A 194 O HIS A 203 SHEET 6 A 6 TYR A 177 MET A 184 -1 N LEU A 183 O ARG A 190 SHEET 1 B 6 SER A 172 VAL A 175 0 SHEET 2 B 6 THR A 45 THR A 49 1 N CYS A 47 O SER A 172 SHEET 3 B 6 VAL A 15 VAL A 25 1 N VAL A 24 O ALA A 46 SHEET 4 B 6 ILE A 202 VAL A 212 1 O VAL A 211 N VAL A 23 SHEET 5 B 6 GLN A 386 ALA A 395 1 O TYR A 394 N THR A 210 SHEET 6 B 6 GLN A 378 VAL A 383 -1 N ARG A 381 O GLN A 388 SHEET 1 C 3 ILE A 65 ASN A 66 0 SHEET 2 C 3 GLN A 143 CYS A 148 -1 O CYS A 148 N ILE A 65 SHEET 3 C 3 GLN A 128 SER A 135 -1 N GLN A 134 O ALA A 144 SHEET 1 D 3 CYS A 245 GLN A 246 0 SHEET 2 D 3 LYS A 582 VAL A 588 -1 O SER A 586 N CYS A 245 SHEET 3 D 3 VAL A 595 PRO A 601 -1 O ARG A 600 N HIS A 583 SHEET 1 E 2 VAL A 251 HIS A 254 0 SHEET 2 E 2 THR A 363 ASN A 367 -1 O TYR A 366 N GLN A 252 SHEET 1 F 3 ILE A 275 ILE A 277 0 SHEET 2 F 3 VAL A 322 GLN A 325 -1 O GLN A 325 N ILE A 275 SHEET 3 F 3 ILE A 358 VAL A 360 -1 O VAL A 360 N VAL A 322 SHEET 1 G 2 ILE A 371 PRO A 372 0 SHEET 2 G 2 ALA A 400 CYS A 401 1 O CYS A 401 N ILE A 371 SHEET 1 H 2 ILE A 464 ARG A 465 0 SHEET 2 H 2 LEU A 507 LYS A 508 1 O LYS A 508 N ILE A 464 SHEET 1 I 3 PHE A 484 ARG A 485 0 SHEET 2 I 3 HIS A 550 ARG A 552 1 O ALA A 551 N ARG A 485 SHEET 3 I 3 SER A 546 ARG A 547 -1 N ARG A 547 O HIS A 550 SHEET 1 J 5 HIS B 29 ASP B 36 0 SHEET 2 J 5 ILE B 11 ARG B 18 -1 N ILE B 16 O GLN B 31 SHEET 3 J 5 SER B 97 TYR B 100 1 O ILE B 99 N ALA B 15 SHEET 4 J 5 ALA B 74 ILE B 77 -1 N ASN B 76 O TYR B 100 SHEET 5 J 5 ASN B 81 LEU B 83 -1 O THR B 82 N MET B 75 LINK NE2 HIS A 57 C8M FAD A 700 1555 1555 2.08 LINK SG CYS B 65 FE2 FES B 302 1555 1555 2.22 LINK SG CYS B 70 FE2 FES B 302 1555 1555 2.32 LINK SG CYS B 73 FE1 FES B 302 1555 1555 1.94 LINK SG CYS B 158 FE4 SF4 B 303 1555 1555 2.26 LINK SG CYS B 161 FE1 SF4 B 303 1555 1555 2.42 LINK SG CYS B 164 FE2 SF4 B 303 1555 1555 2.22 LINK SG CYS B 221 FE1 F3S B 304 1555 1555 2.47 LINK SG CYS B 225 FE3 SF4 B 303 1555 1555 2.67 LINK NE2 HIS C 101 FE HEM C1305 1555 1555 2.16 LINK FE HEM C1305 NE2 HIS D 79 1555 1555 2.35 SITE 1 AC1 30 GLY A 26 ALA A 27 GLY A 28 VAL A 48 SITE 2 AC1 30 THR A 49 LYS A 50 LEU A 51 SER A 56 SITE 3 AC1 30 HIS A 57 THR A 58 ALA A 60 ALA A 61 SITE 4 AC1 30 GLN A 62 GLY A 63 GLY A 64 TYR A 177 SITE 5 AC1 30 PHE A 178 ALA A 179 ALA A 213 THR A 214 SITE 6 AC1 30 GLY A 215 THR A 225 SER A 226 ASP A 233 SITE 7 AC1 30 TYR A 366 GLU A 398 ARG A 409 SER A 414 SITE 8 AC1 30 LEU A 415 LEU A 418 SITE 1 AC2 8 SER B 64 CYS B 65 ARG B 66 GLY B 68 SITE 2 AC2 8 CYS B 70 GLY B 71 CYS B 73 CYS B 85 SITE 1 AC3 9 CYS B 158 ILE B 159 LEU B 160 CYS B 161 SITE 2 AC3 9 ALA B 162 CYS B 164 ALA B 182 CYS B 225 SITE 3 AC3 9 PRO B 226 SITE 1 AC4 9 CYS B 168 SER B 170 TYR B 178 PRO B 181 SITE 2 AC4 9 CYS B 215 THR B 217 ILE B 218 MET B 219 SITE 3 AC4 9 CYS B 221 SITE 1 AC5 13 HIS C 45 ARG C 46 GLY C 49 SER C 53 SITE 2 AC5 13 HIS C 101 HIS C 108 ARG D 47 SER D 50 SITE 3 AC5 13 LEU D 53 LEU D 54 LEU D 57 HIS D 79 SITE 4 AC5 13 GLY D 83 SITE 1 AC6 10 PRO B 169 TRP B 173 HIS B 216 ILE B 218 SITE 2 AC6 10 ILE C 30 TRP C 35 SER C 42 ARG C 46 SITE 3 AC6 10 ASP D 90 TYR D 91 CRYST1 71.175 83.988 293.691 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003405 0.00000