data_3AH7 # _entry.id 3AH7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3AH7 pdb_00003ah7 10.2210/pdb3ah7/pdb RCSB RCSB029249 ? ? WWPDB D_1000029249 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1I7H . unspecified PDB 1E9M . unspecified PDB 1AYF . unspecified PDB 1OQQ . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3AH7 _pdbx_database_status.recvd_initial_deposition_date 2010-04-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kumasaka, T.' 1 'Shimizu, N.' 2 'Ohmori, D.' 3 'Iwasaki, T.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 1 ;Crystallization and preliminary X-ray diffraction studies of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004 ; 'Acta Crystallogr.,Sect.F' 63 1014 1016 2007 ? DK 1744-3091 ? ? 18084081 10.1107/S1744309107045757 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Iwasaki, T.' 1 ? primary 'Kappl, R.' 2 ? primary 'Bracic, G.' 3 ? primary 'Shimizu, N.' 4 ? primary 'Ohmori, D.' 5 ? primary 'Kumasaka, T.' 6 ? 1 'Iwasaki, T.' 7 ? 1 'Ohmori, D.' 8 ? 1 'Shimizu, N.' 9 ? 1 'Kumasaka, T.' 10 ? # _cell.entry_id 3AH7 _cell.length_a 87.575 _cell.length_b 87.575 _cell.length_c 73.139 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3AH7 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '[2Fe-2S]ferredoxin' 12517.174 1 ? ? ? ? 2 non-polymer syn 'FE2/S2 (INORGANIC) CLUSTER' 175.820 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 152 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLE AQSRLGCQVFVADEDLTIEIPKYSLNHAAEAPH ; _entity_poly.pdbx_seq_one_letter_code_can ;MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLE AQSRLGCQVFVADEDLTIEIPKYSLNHAAEAPH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 LEU n 1 4 VAL n 1 5 THR n 1 6 PHE n 1 7 LEU n 1 8 PRO n 1 9 HIS n 1 10 GLU n 1 11 LYS n 1 12 PHE n 1 13 CYS n 1 14 PRO n 1 15 GLU n 1 16 GLY n 1 17 LEU n 1 18 THR n 1 19 VAL n 1 20 GLU n 1 21 VAL n 1 22 LYS n 1 23 PRO n 1 24 GLY n 1 25 THR n 1 26 ASN n 1 27 ILE n 1 28 LEU n 1 29 GLU n 1 30 LEU n 1 31 ALA n 1 32 HIS n 1 33 ASP n 1 34 HIS n 1 35 HIS n 1 36 ILE n 1 37 GLU n 1 38 MET n 1 39 GLU n 1 40 SER n 1 41 ALA n 1 42 CYS n 1 43 GLY n 1 44 GLY n 1 45 VAL n 1 46 LYS n 1 47 ALA n 1 48 CYS n 1 49 THR n 1 50 THR n 1 51 CYS n 1 52 HIS n 1 53 CYS n 1 54 ILE n 1 55 VAL n 1 56 ARG n 1 57 LYS n 1 58 GLY n 1 59 PHE n 1 60 ASP n 1 61 SER n 1 62 LEU n 1 63 GLU n 1 64 GLU n 1 65 ALA n 1 66 ASP n 1 67 GLU n 1 68 LEU n 1 69 GLU n 1 70 GLU n 1 71 ASP n 1 72 MET n 1 73 LEU n 1 74 ASP n 1 75 LYS n 1 76 ALA n 1 77 TRP n 1 78 GLY n 1 79 LEU n 1 80 GLU n 1 81 ALA n 1 82 GLN n 1 83 SER n 1 84 ARG n 1 85 LEU n 1 86 GLY n 1 87 CYS n 1 88 GLN n 1 89 VAL n 1 90 PHE n 1 91 VAL n 1 92 ALA n 1 93 ASP n 1 94 GLU n 1 95 ASP n 1 96 LEU n 1 97 THR n 1 98 ILE n 1 99 GLU n 1 100 ILE n 1 101 PRO n 1 102 LYS n 1 103 TYR n 1 104 SER n 1 105 LEU n 1 106 ASN n 1 107 HIS n 1 108 ALA n 1 109 ALA n 1 110 GLU n 1 111 ALA n 1 112 PRO n 1 113 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene fdxB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'JCM 20004' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas putida' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 303 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q76CS9_PSEPU _struct_ref.pdbx_db_accession Q76CS9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLEA QSRLGCQVFVADEDLTIEIPKYSLNHAAEAPH ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3AH7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q76CS9 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 113 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 112 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3AH7 _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q76CS9 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FES non-polymer . 'FE2/S2 (INORGANIC) CLUSTER' ? 'Fe2 S2' 175.820 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3AH7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.23 _exptl_crystal.density_percent_sol 61.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '1.6M trisodium citrate dihydrate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-07-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rotated-inclined double-crystal monochromator (Si(111)), K-B mirror (Rh coated)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3AH7 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 75.81 _reflns.d_resolution_high 1.90 _reflns.number_obs 13390 _reflns.number_all ? _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.116 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.1 _reflns.pdbx_netI_over_sigmaI 8.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 97.8 _reflns_shell.Rmerge_I_obs 0.35 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 9.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1285 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3AH7 _refine.ls_number_reflns_obs 12725 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.92 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 98.79 _refine.ls_R_factor_obs 0.18341 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18172 _refine.ls_R_factor_R_free 0.21562 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 664 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.927 _refine.B_iso_mean 18.387 _refine.aniso_B[1][1] -0.29 _refine.aniso_B[2][2] -0.29 _refine.aniso_B[3][3] 0.43 _refine.aniso_B[1][2] -0.14 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1i7h' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.121 _refine.pdbx_overall_ESU_R_Free 0.118 _refine.overall_SU_ML 0.074 _refine.overall_SU_B 2.452 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 841 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 152 _refine_hist.number_atoms_total 999 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 37.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 880 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.558 1.975 ? 1195 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.430 5.000 ? 114 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.390 26.000 ? 40 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.532 15.000 ? 155 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8.818 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.097 0.200 ? 135 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 664 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.202 0.200 ? 386 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.302 0.200 ? 606 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.133 0.200 ? 111 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.167 0.200 ? 26 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.136 0.200 ? 16 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.764 1.500 ? 552 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.469 2.000 ? 892 'X-RAY DIFFRACTION' ? r_scbond_it 2.525 3.000 ? 334 'X-RAY DIFFRACTION' ? r_scangle_it 4.429 4.500 ? 298 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_R_work 890 _refine_ls_shell.R_factor_R_work 0.203 _refine_ls_shell.percent_reflns_obs 98.14 _refine_ls_shell.R_factor_R_free 0.212 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3AH7 _struct.title 'Crystal structure of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3AH7 _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text 'ferredoxin, [2Fe-2S] cluster, iron-sulfur cluster biosynthesis, Pseudomonas, METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 26 ? HIS A 34 ? ASN A 25 HIS A 33 1 ? 9 HELX_P HELX_P2 2 GLY A 58 ? LEU A 62 ? GLY A 57 LEU A 61 5 ? 5 HELX_P HELX_P3 3 ASP A 66 ? ASP A 74 ? ASP A 65 ASP A 73 1 ? 9 HELX_P HELX_P4 4 CYS A 87 ? VAL A 89 ? CYS A 86 VAL A 88 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 39 OE1 ? ? ? 1_555 C NA . NA ? ? A GLU 38 A NA 202 1_555 ? ? ? ? ? ? ? 2.513 ? ? metalc2 metalc ? ? A CYS 42 SG ? ? ? 1_555 B FES . FE1 ? ? A CYS 41 A FES 201 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc3 metalc ? ? A CYS 48 SG ? ? ? 1_555 B FES . FE1 ? ? A CYS 47 A FES 201 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc4 metalc ? ? A CYS 51 SG ? ? ? 1_555 B FES . FE2 ? ? A CYS 50 A FES 201 1_555 ? ? ? ? ? ? ? 2.361 ? ? metalc5 metalc ? ? A CYS 87 SG ? ? ? 1_555 B FES . FE2 ? ? A CYS 86 A FES 201 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc6 metalc ? ? C NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 202 A HOH 323 1_555 ? ? ? ? ? ? ? 2.441 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 17 ? GLU A 20 ? LEU A 16 GLU A 19 A 2 LEU A 3 ? PHE A 6 ? LEU A 2 PHE A 5 A 3 LEU A 96 ? GLU A 99 ? LEU A 95 GLU A 98 A 4 HIS A 52 ? LYS A 57 ? HIS A 51 LYS A 56 A 5 SER A 83 ? LEU A 85 ? SER A 82 LEU A 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 17 ? O LEU A 16 N PHE A 6 ? N PHE A 5 A 2 3 N THR A 5 ? N THR A 4 O ILE A 98 ? O ILE A 97 A 3 4 O GLU A 99 ? O GLU A 98 N ILE A 54 ? N ILE A 53 A 4 5 N CYS A 53 ? N CYS A 52 O ARG A 84 ? O ARG A 83 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FES 201 ? 9 'BINDING SITE FOR RESIDUE FES A 201' AC2 Software A NA 202 ? 6 'BINDING SITE FOR RESIDUE NA A 202' AC3 Software A CL 203 ? 6 'BINDING SITE FOR RESIDUE CL A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 SER A 40 ? SER A 39 . ? 1_555 ? 2 AC1 9 CYS A 42 ? CYS A 41 . ? 1_555 ? 3 AC1 9 GLY A 44 ? GLY A 43 . ? 1_555 ? 4 AC1 9 LYS A 46 ? LYS A 45 . ? 1_555 ? 5 AC1 9 ALA A 47 ? ALA A 46 . ? 1_555 ? 6 AC1 9 CYS A 48 ? CYS A 47 . ? 1_555 ? 7 AC1 9 CYS A 51 ? CYS A 50 . ? 1_555 ? 8 AC1 9 LEU A 85 ? LEU A 84 . ? 1_555 ? 9 AC1 9 CYS A 87 ? CYS A 86 . ? 1_555 ? 10 AC2 6 GLU A 39 ? GLU A 38 . ? 1_555 ? 11 AC2 6 ASN A 106 ? ASN A 105 . ? 9_554 ? 12 AC2 6 HIS A 107 ? HIS A 106 . ? 9_554 ? 13 AC2 6 HOH E . ? HOH A 314 . ? 9_554 ? 14 AC2 6 HOH E . ? HOH A 318 . ? 9_554 ? 15 AC2 6 HOH E . ? HOH A 323 . ? 1_555 ? 16 AC3 6 THR A 49 ? THR A 48 . ? 1_555 ? 17 AC3 6 ALA A 76 ? ALA A 75 . ? 1_555 ? 18 AC3 6 TRP A 77 ? TRP A 76 . ? 1_555 ? 19 AC3 6 SER A 104 ? SER A 103 . ? 1_555 ? 20 AC3 6 LEU A 105 ? LEU A 104 . ? 1_555 ? 21 AC3 6 HOH E . ? HOH A 301 . ? 1_555 ? # _database_PDB_matrix.entry_id 3AH7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3AH7 _atom_sites.fract_transf_matrix[1][1] 0.011419 _atom_sites.fract_transf_matrix[1][2] 0.006593 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013185 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013673 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL FE N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 PRO 2 1 1 PRO PRO A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 VAL 4 3 3 VAL VAL A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 PHE 6 5 5 PHE PHE A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 HIS 9 8 8 HIS HIS A . n A 1 10 GLU 10 9 9 GLU GLU A . n A 1 11 LYS 11 10 10 LYS LYS A . n A 1 12 PHE 12 11 11 PHE PHE A . n A 1 13 CYS 13 12 12 CYS CYS A . n A 1 14 PRO 14 13 13 PRO PRO A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 LEU 17 16 16 LEU LEU A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 LYS 22 21 21 LYS LYS A . n A 1 23 PRO 23 22 22 PRO PRO A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 THR 25 24 24 THR THR A . n A 1 26 ASN 26 25 25 ASN ASN A . n A 1 27 ILE 27 26 26 ILE ILE A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 GLU 29 28 28 GLU GLU A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 HIS 34 33 33 HIS HIS A . n A 1 35 HIS 35 34 34 HIS HIS A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 GLU 37 36 36 GLU GLU A . n A 1 38 MET 38 37 37 MET MET A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 SER 40 39 39 SER SER A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 CYS 42 41 41 CYS CYS A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 LYS 46 45 45 LYS LYS A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 CYS 48 47 47 CYS CYS A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 CYS 51 50 50 CYS CYS A . n A 1 52 HIS 52 51 51 HIS HIS A . n A 1 53 CYS 53 52 52 CYS CYS A . n A 1 54 ILE 54 53 53 ILE ILE A . n A 1 55 VAL 55 54 54 VAL VAL A . n A 1 56 ARG 56 55 55 ARG ARG A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 PHE 59 58 58 PHE PHE A . n A 1 60 ASP 60 59 59 ASP ASP A . n A 1 61 SER 61 60 60 SER SER A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 ASP 66 65 65 ASP ASP A . n A 1 67 GLU 67 66 66 GLU GLU A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 GLU 69 68 68 GLU GLU A . n A 1 70 GLU 70 69 69 GLU GLU A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 MET 72 71 71 MET MET A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 ASP 74 73 73 ASP ASP A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 TRP 77 76 76 TRP TRP A . n A 1 78 GLY 78 77 77 GLY GLY A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 ALA 81 80 80 ALA ALA A . n A 1 82 GLN 82 81 81 GLN GLN A . n A 1 83 SER 83 82 82 SER SER A . n A 1 84 ARG 84 83 83 ARG ARG A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 GLY 86 85 85 GLY GLY A . n A 1 87 CYS 87 86 86 CYS CYS A . n A 1 88 GLN 88 87 87 GLN GLN A . n A 1 89 VAL 89 88 88 VAL VAL A . n A 1 90 PHE 90 89 89 PHE PHE A . n A 1 91 VAL 91 90 90 VAL VAL A . n A 1 92 ALA 92 91 91 ALA ALA A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 ASP 95 94 94 ASP ASP A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 THR 97 96 96 THR THR A . n A 1 98 ILE 98 97 97 ILE ILE A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 ILE 100 99 99 ILE ILE A . n A 1 101 PRO 101 100 100 PRO PRO A . n A 1 102 LYS 102 101 101 LYS LYS A . n A 1 103 TYR 103 102 102 TYR TYR A . n A 1 104 SER 104 103 103 SER SER A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 ASN 106 105 105 ASN ASN A . n A 1 107 HIS 107 106 106 HIS HIS A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 ALA 109 108 108 ALA ALA A . n A 1 110 GLU 110 109 ? ? ? A . n A 1 111 ALA 111 110 ? ? ? A . n A 1 112 PRO 112 111 ? ? ? A . n A 1 113 HIS 113 112 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES 1 201 201 FES FES A . C 3 NA 1 202 202 NA NA A . D 4 CL 1 203 203 CL CL A . E 5 HOH 1 301 301 HOH HOH A . E 5 HOH 2 302 302 HOH HOH A . E 5 HOH 3 303 303 HOH HOH A . E 5 HOH 4 304 304 HOH HOH A . E 5 HOH 5 305 305 HOH HOH A . E 5 HOH 6 306 306 HOH HOH A . E 5 HOH 7 307 307 HOH HOH A . E 5 HOH 8 308 308 HOH HOH A . E 5 HOH 9 309 309 HOH HOH A . E 5 HOH 10 310 310 HOH HOH A . E 5 HOH 11 311 311 HOH HOH A . E 5 HOH 12 312 312 HOH HOH A . E 5 HOH 13 313 313 HOH HOH A . E 5 HOH 14 314 314 HOH HOH A . E 5 HOH 15 315 315 HOH HOH A . E 5 HOH 16 316 316 HOH HOH A . E 5 HOH 17 317 317 HOH HOH A . E 5 HOH 18 318 318 HOH HOH A . E 5 HOH 19 319 319 HOH HOH A . E 5 HOH 20 320 320 HOH HOH A . E 5 HOH 21 321 321 HOH HOH A . E 5 HOH 22 322 322 HOH HOH A . E 5 HOH 23 323 323 HOH HOH A . E 5 HOH 24 324 324 HOH HOH A . E 5 HOH 25 325 325 HOH HOH A . E 5 HOH 26 326 326 HOH HOH A . E 5 HOH 27 327 327 HOH HOH A . E 5 HOH 28 328 328 HOH HOH A . E 5 HOH 29 329 329 HOH HOH A . E 5 HOH 30 330 330 HOH HOH A . E 5 HOH 31 331 331 HOH HOH A . E 5 HOH 32 332 332 HOH HOH A . E 5 HOH 33 333 333 HOH HOH A . E 5 HOH 34 334 334 HOH HOH A . E 5 HOH 35 335 335 HOH HOH A . E 5 HOH 36 336 336 HOH HOH A . E 5 HOH 37 337 337 HOH HOH A . E 5 HOH 38 338 338 HOH HOH A . E 5 HOH 39 339 339 HOH HOH A . E 5 HOH 40 340 340 HOH HOH A . E 5 HOH 41 341 341 HOH HOH A . E 5 HOH 42 342 342 HOH HOH A . E 5 HOH 43 343 343 HOH HOH A . E 5 HOH 44 344 344 HOH HOH A . E 5 HOH 45 345 345 HOH HOH A . E 5 HOH 46 346 346 HOH HOH A . E 5 HOH 47 347 347 HOH HOH A . E 5 HOH 48 348 348 HOH HOH A . E 5 HOH 49 349 349 HOH HOH A . E 5 HOH 50 350 350 HOH HOH A . E 5 HOH 51 351 351 HOH HOH A . E 5 HOH 52 352 352 HOH HOH A . E 5 HOH 53 353 353 HOH HOH A . E 5 HOH 54 354 354 HOH HOH A . E 5 HOH 55 355 355 HOH HOH A . E 5 HOH 56 356 356 HOH HOH A . E 5 HOH 57 357 357 HOH HOH A . E 5 HOH 58 358 358 HOH HOH A . E 5 HOH 59 359 359 HOH HOH A . E 5 HOH 60 360 360 HOH HOH A . E 5 HOH 61 361 361 HOH HOH A . E 5 HOH 62 362 362 HOH HOH A . E 5 HOH 63 363 363 HOH HOH A . E 5 HOH 64 364 364 HOH HOH A . E 5 HOH 65 365 365 HOH HOH A . E 5 HOH 66 366 366 HOH HOH A . E 5 HOH 67 367 367 HOH HOH A . E 5 HOH 68 368 368 HOH HOH A . E 5 HOH 69 369 369 HOH HOH A . E 5 HOH 70 370 370 HOH HOH A . E 5 HOH 71 371 371 HOH HOH A . E 5 HOH 72 372 372 HOH HOH A . E 5 HOH 73 373 373 HOH HOH A . E 5 HOH 74 374 374 HOH HOH A . E 5 HOH 75 375 375 HOH HOH A . E 5 HOH 76 376 376 HOH HOH A . E 5 HOH 77 377 377 HOH HOH A . E 5 HOH 78 378 378 HOH HOH A . E 5 HOH 79 379 379 HOH HOH A . E 5 HOH 80 380 380 HOH HOH A . E 5 HOH 81 381 381 HOH HOH A . E 5 HOH 82 382 382 HOH HOH A . E 5 HOH 83 383 383 HOH HOH A . E 5 HOH 84 384 384 HOH HOH A . E 5 HOH 85 385 385 HOH HOH A . E 5 HOH 86 386 386 HOH HOH A . E 5 HOH 87 387 387 HOH HOH A . E 5 HOH 88 388 388 HOH HOH A . E 5 HOH 89 389 389 HOH HOH A . E 5 HOH 90 390 390 HOH HOH A . E 5 HOH 91 391 391 HOH HOH A . E 5 HOH 92 392 392 HOH HOH A . E 5 HOH 93 393 393 HOH HOH A . E 5 HOH 94 394 394 HOH HOH A . E 5 HOH 95 395 395 HOH HOH A . E 5 HOH 96 396 396 HOH HOH A . E 5 HOH 97 397 397 HOH HOH A . E 5 HOH 98 398 398 HOH HOH A . E 5 HOH 99 399 399 HOH HOH A . E 5 HOH 100 400 400 HOH HOH A . E 5 HOH 101 401 401 HOH HOH A . E 5 HOH 102 402 402 HOH HOH A . E 5 HOH 103 403 403 HOH HOH A . E 5 HOH 104 404 404 HOH HOH A . E 5 HOH 105 405 405 HOH HOH A . E 5 HOH 106 406 406 HOH HOH A . E 5 HOH 107 407 407 HOH HOH A . E 5 HOH 108 408 408 HOH HOH A . E 5 HOH 109 409 409 HOH HOH A . E 5 HOH 110 410 410 HOH HOH A . E 5 HOH 111 411 411 HOH HOH A . E 5 HOH 112 412 412 HOH HOH A . E 5 HOH 113 413 413 HOH HOH A . E 5 HOH 114 414 414 HOH HOH A . E 5 HOH 115 415 415 HOH HOH A . E 5 HOH 116 416 416 HOH HOH A . E 5 HOH 117 417 417 HOH HOH A . E 5 HOH 118 418 418 HOH HOH A . E 5 HOH 119 419 419 HOH HOH A . E 5 HOH 120 420 420 HOH HOH A . E 5 HOH 121 421 421 HOH HOH A . E 5 HOH 122 422 422 HOH HOH A . E 5 HOH 123 423 423 HOH HOH A . E 5 HOH 124 424 424 HOH HOH A . E 5 HOH 125 425 425 HOH HOH A . E 5 HOH 126 426 426 HOH HOH A . E 5 HOH 127 427 427 HOH HOH A . E 5 HOH 128 428 428 HOH HOH A . E 5 HOH 129 429 429 HOH HOH A . E 5 HOH 130 430 430 HOH HOH A . E 5 HOH 131 431 431 HOH HOH A . E 5 HOH 132 432 432 HOH HOH A . E 5 HOH 133 433 433 HOH HOH A . E 5 HOH 134 434 434 HOH HOH A . E 5 HOH 135 435 435 HOH HOH A . E 5 HOH 136 436 436 HOH HOH A . E 5 HOH 137 437 437 HOH HOH A . E 5 HOH 138 438 438 HOH HOH A . E 5 HOH 139 439 439 HOH HOH A . E 5 HOH 140 440 440 HOH HOH A . E 5 HOH 141 441 441 HOH HOH A . E 5 HOH 142 442 442 HOH HOH A . E 5 HOH 143 443 443 HOH HOH A . E 5 HOH 144 444 444 HOH HOH A . E 5 HOH 145 445 445 HOH HOH A . E 5 HOH 146 446 446 HOH HOH A . E 5 HOH 147 447 447 HOH HOH A . E 5 HOH 148 448 448 HOH HOH A . E 5 HOH 149 449 449 HOH HOH A . E 5 HOH 150 450 450 HOH HOH A . E 5 HOH 151 451 451 HOH HOH A . E 5 HOH 152 452 452 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1610 ? 1 MORE -10 ? 1 'SSA (A^2)' 11040 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -24.3796666667 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 302 ? E HOH . 2 1 A HOH 328 ? E HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 39 ? A GLU 38 ? 1_555 NA ? C NA . ? A NA 202 ? 1_555 O ? E HOH . ? A HOH 323 ? 1_555 89.8 ? 2 SG ? A CYS 42 ? A CYS 41 ? 1_555 FE1 ? B FES . ? A FES 201 ? 1_555 S1 ? B FES . ? A FES 201 ? 1_555 106.6 ? 3 SG ? A CYS 42 ? A CYS 41 ? 1_555 FE1 ? B FES . ? A FES 201 ? 1_555 S2 ? B FES . ? A FES 201 ? 1_555 111.8 ? 4 S1 ? B FES . ? A FES 201 ? 1_555 FE1 ? B FES . ? A FES 201 ? 1_555 S2 ? B FES . ? A FES 201 ? 1_555 103.6 ? 5 SG ? A CYS 42 ? A CYS 41 ? 1_555 FE1 ? B FES . ? A FES 201 ? 1_555 SG ? A CYS 48 ? A CYS 47 ? 1_555 109.5 ? 6 S1 ? B FES . ? A FES 201 ? 1_555 FE1 ? B FES . ? A FES 201 ? 1_555 SG ? A CYS 48 ? A CYS 47 ? 1_555 115.1 ? 7 S2 ? B FES . ? A FES 201 ? 1_555 FE1 ? B FES . ? A FES 201 ? 1_555 SG ? A CYS 48 ? A CYS 47 ? 1_555 110.2 ? 8 SG ? A CYS 51 ? A CYS 50 ? 1_555 FE2 ? B FES . ? A FES 201 ? 1_555 S1 ? B FES . ? A FES 201 ? 1_555 108.7 ? 9 SG ? A CYS 51 ? A CYS 50 ? 1_555 FE2 ? B FES . ? A FES 201 ? 1_555 S2 ? B FES . ? A FES 201 ? 1_555 114.1 ? 10 S1 ? B FES . ? A FES 201 ? 1_555 FE2 ? B FES . ? A FES 201 ? 1_555 S2 ? B FES . ? A FES 201 ? 1_555 105.7 ? 11 SG ? A CYS 51 ? A CYS 50 ? 1_555 FE2 ? B FES . ? A FES 201 ? 1_555 SG ? A CYS 87 ? A CYS 86 ? 1_555 104.9 ? 12 S1 ? B FES . ? A FES 201 ? 1_555 FE2 ? B FES . ? A FES 201 ? 1_555 SG ? A CYS 87 ? A CYS 86 ? 1_555 105.0 ? 13 S2 ? B FES . ? A FES 201 ? 1_555 FE2 ? B FES . ? A FES 201 ? 1_555 SG ? A CYS 87 ? A CYS 86 ? 1_555 117.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 3 'Structure model' '_struct_ref_seq_dif.details' 34 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BSS 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 12 ? ? -164.23 73.75 2 1 CYS A 12 ? ? -162.83 70.81 3 1 ALA A 91 ? ? -105.68 -119.62 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 74 ? CA A A LYS 75 CA 2 1 Y 0 A LYS 74 ? CB A A LYS 75 CB 3 1 Y 0 A LYS 74 ? CG A A LYS 75 CG 4 1 Y 0 A LYS 74 ? CD A A LYS 75 CD 5 1 Y 0 A LYS 74 ? CE A A LYS 75 CE 6 1 Y 0 A LYS 74 ? NZ A A LYS 75 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 109 ? A GLU 110 2 1 Y 1 A ALA 110 ? A ALA 111 3 1 Y 1 A PRO 111 ? A PRO 112 4 1 Y 1 A HIS 112 ? A HIS 113 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 FES FE1 FE N N 89 FES FE2 FE N N 90 FES S1 S N N 91 FES S2 S N N 92 GLN N N N N 93 GLN CA C N S 94 GLN C C N N 95 GLN O O N N 96 GLN CB C N N 97 GLN CG C N N 98 GLN CD C N N 99 GLN OE1 O N N 100 GLN NE2 N N N 101 GLN OXT O N N 102 GLN H H N N 103 GLN H2 H N N 104 GLN HA H N N 105 GLN HB2 H N N 106 GLN HB3 H N N 107 GLN HG2 H N N 108 GLN HG3 H N N 109 GLN HE21 H N N 110 GLN HE22 H N N 111 GLN HXT H N N 112 GLU N N N N 113 GLU CA C N S 114 GLU C C N N 115 GLU O O N N 116 GLU CB C N N 117 GLU CG C N N 118 GLU CD C N N 119 GLU OE1 O N N 120 GLU OE2 O N N 121 GLU OXT O N N 122 GLU H H N N 123 GLU H2 H N N 124 GLU HA H N N 125 GLU HB2 H N N 126 GLU HB3 H N N 127 GLU HG2 H N N 128 GLU HG3 H N N 129 GLU HE2 H N N 130 GLU HXT H N N 131 GLY N N N N 132 GLY CA C N N 133 GLY C C N N 134 GLY O O N N 135 GLY OXT O N N 136 GLY H H N N 137 GLY H2 H N N 138 GLY HA2 H N N 139 GLY HA3 H N N 140 GLY HXT H N N 141 HIS N N N N 142 HIS CA C N S 143 HIS C C N N 144 HIS O O N N 145 HIS CB C N N 146 HIS CG C Y N 147 HIS ND1 N Y N 148 HIS CD2 C Y N 149 HIS CE1 C Y N 150 HIS NE2 N Y N 151 HIS OXT O N N 152 HIS H H N N 153 HIS H2 H N N 154 HIS HA H N N 155 HIS HB2 H N N 156 HIS HB3 H N N 157 HIS HD1 H N N 158 HIS HD2 H N N 159 HIS HE1 H N N 160 HIS HE2 H N N 161 HIS HXT H N N 162 HOH O O N N 163 HOH H1 H N N 164 HOH H2 H N N 165 ILE N N N N 166 ILE CA C N S 167 ILE C C N N 168 ILE O O N N 169 ILE CB C N S 170 ILE CG1 C N N 171 ILE CG2 C N N 172 ILE CD1 C N N 173 ILE OXT O N N 174 ILE H H N N 175 ILE H2 H N N 176 ILE HA H N N 177 ILE HB H N N 178 ILE HG12 H N N 179 ILE HG13 H N N 180 ILE HG21 H N N 181 ILE HG22 H N N 182 ILE HG23 H N N 183 ILE HD11 H N N 184 ILE HD12 H N N 185 ILE HD13 H N N 186 ILE HXT H N N 187 LEU N N N N 188 LEU CA C N S 189 LEU C C N N 190 LEU O O N N 191 LEU CB C N N 192 LEU CG C N N 193 LEU CD1 C N N 194 LEU CD2 C N N 195 LEU OXT O N N 196 LEU H H N N 197 LEU H2 H N N 198 LEU HA H N N 199 LEU HB2 H N N 200 LEU HB3 H N N 201 LEU HG H N N 202 LEU HD11 H N N 203 LEU HD12 H N N 204 LEU HD13 H N N 205 LEU HD21 H N N 206 LEU HD22 H N N 207 LEU HD23 H N N 208 LEU HXT H N N 209 LYS N N N N 210 LYS CA C N S 211 LYS C C N N 212 LYS O O N N 213 LYS CB C N N 214 LYS CG C N N 215 LYS CD C N N 216 LYS CE C N N 217 LYS NZ N N N 218 LYS OXT O N N 219 LYS H H N N 220 LYS H2 H N N 221 LYS HA H N N 222 LYS HB2 H N N 223 LYS HB3 H N N 224 LYS HG2 H N N 225 LYS HG3 H N N 226 LYS HD2 H N N 227 LYS HD3 H N N 228 LYS HE2 H N N 229 LYS HE3 H N N 230 LYS HZ1 H N N 231 LYS HZ2 H N N 232 LYS HZ3 H N N 233 LYS HXT H N N 234 MET N N N N 235 MET CA C N S 236 MET C C N N 237 MET O O N N 238 MET CB C N N 239 MET CG C N N 240 MET SD S N N 241 MET CE C N N 242 MET OXT O N N 243 MET H H N N 244 MET H2 H N N 245 MET HA H N N 246 MET HB2 H N N 247 MET HB3 H N N 248 MET HG2 H N N 249 MET HG3 H N N 250 MET HE1 H N N 251 MET HE2 H N N 252 MET HE3 H N N 253 MET HXT H N N 254 NA NA NA N N 255 PHE N N N N 256 PHE CA C N S 257 PHE C C N N 258 PHE O O N N 259 PHE CB C N N 260 PHE CG C Y N 261 PHE CD1 C Y N 262 PHE CD2 C Y N 263 PHE CE1 C Y N 264 PHE CE2 C Y N 265 PHE CZ C Y N 266 PHE OXT O N N 267 PHE H H N N 268 PHE H2 H N N 269 PHE HA H N N 270 PHE HB2 H N N 271 PHE HB3 H N N 272 PHE HD1 H N N 273 PHE HD2 H N N 274 PHE HE1 H N N 275 PHE HE2 H N N 276 PHE HZ H N N 277 PHE HXT H N N 278 PRO N N N N 279 PRO CA C N S 280 PRO C C N N 281 PRO O O N N 282 PRO CB C N N 283 PRO CG C N N 284 PRO CD C N N 285 PRO OXT O N N 286 PRO H H N N 287 PRO HA H N N 288 PRO HB2 H N N 289 PRO HB3 H N N 290 PRO HG2 H N N 291 PRO HG3 H N N 292 PRO HD2 H N N 293 PRO HD3 H N N 294 PRO HXT H N N 295 SER N N N N 296 SER CA C N S 297 SER C C N N 298 SER O O N N 299 SER CB C N N 300 SER OG O N N 301 SER OXT O N N 302 SER H H N N 303 SER H2 H N N 304 SER HA H N N 305 SER HB2 H N N 306 SER HB3 H N N 307 SER HG H N N 308 SER HXT H N N 309 THR N N N N 310 THR CA C N S 311 THR C C N N 312 THR O O N N 313 THR CB C N R 314 THR OG1 O N N 315 THR CG2 C N N 316 THR OXT O N N 317 THR H H N N 318 THR H2 H N N 319 THR HA H N N 320 THR HB H N N 321 THR HG1 H N N 322 THR HG21 H N N 323 THR HG22 H N N 324 THR HG23 H N N 325 THR HXT H N N 326 TRP N N N N 327 TRP CA C N S 328 TRP C C N N 329 TRP O O N N 330 TRP CB C N N 331 TRP CG C Y N 332 TRP CD1 C Y N 333 TRP CD2 C Y N 334 TRP NE1 N Y N 335 TRP CE2 C Y N 336 TRP CE3 C Y N 337 TRP CZ2 C Y N 338 TRP CZ3 C Y N 339 TRP CH2 C Y N 340 TRP OXT O N N 341 TRP H H N N 342 TRP H2 H N N 343 TRP HA H N N 344 TRP HB2 H N N 345 TRP HB3 H N N 346 TRP HD1 H N N 347 TRP HE1 H N N 348 TRP HE3 H N N 349 TRP HZ2 H N N 350 TRP HZ3 H N N 351 TRP HH2 H N N 352 TRP HXT H N N 353 TYR N N N N 354 TYR CA C N S 355 TYR C C N N 356 TYR O O N N 357 TYR CB C N N 358 TYR CG C Y N 359 TYR CD1 C Y N 360 TYR CD2 C Y N 361 TYR CE1 C Y N 362 TYR CE2 C Y N 363 TYR CZ C Y N 364 TYR OH O N N 365 TYR OXT O N N 366 TYR H H N N 367 TYR H2 H N N 368 TYR HA H N N 369 TYR HB2 H N N 370 TYR HB3 H N N 371 TYR HD1 H N N 372 TYR HD2 H N N 373 TYR HE1 H N N 374 TYR HE2 H N N 375 TYR HH H N N 376 TYR HXT H N N 377 VAL N N N N 378 VAL CA C N S 379 VAL C C N N 380 VAL O O N N 381 VAL CB C N N 382 VAL CG1 C N N 383 VAL CG2 C N N 384 VAL OXT O N N 385 VAL H H N N 386 VAL H2 H N N 387 VAL HA H N N 388 VAL HB H N N 389 VAL HG11 H N N 390 VAL HG12 H N N 391 VAL HG13 H N N 392 VAL HG21 H N N 393 VAL HG22 H N N 394 VAL HG23 H N N 395 VAL HXT H N N 396 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FES FE1 S1 sing N N 83 FES FE1 S2 sing N N 84 FES FE2 S1 sing N N 85 FES FE2 S2 sing N N 86 GLN N CA sing N N 87 GLN N H sing N N 88 GLN N H2 sing N N 89 GLN CA C sing N N 90 GLN CA CB sing N N 91 GLN CA HA sing N N 92 GLN C O doub N N 93 GLN C OXT sing N N 94 GLN CB CG sing N N 95 GLN CB HB2 sing N N 96 GLN CB HB3 sing N N 97 GLN CG CD sing N N 98 GLN CG HG2 sing N N 99 GLN CG HG3 sing N N 100 GLN CD OE1 doub N N 101 GLN CD NE2 sing N N 102 GLN NE2 HE21 sing N N 103 GLN NE2 HE22 sing N N 104 GLN OXT HXT sing N N 105 GLU N CA sing N N 106 GLU N H sing N N 107 GLU N H2 sing N N 108 GLU CA C sing N N 109 GLU CA CB sing N N 110 GLU CA HA sing N N 111 GLU C O doub N N 112 GLU C OXT sing N N 113 GLU CB CG sing N N 114 GLU CB HB2 sing N N 115 GLU CB HB3 sing N N 116 GLU CG CD sing N N 117 GLU CG HG2 sing N N 118 GLU CG HG3 sing N N 119 GLU CD OE1 doub N N 120 GLU CD OE2 sing N N 121 GLU OE2 HE2 sing N N 122 GLU OXT HXT sing N N 123 GLY N CA sing N N 124 GLY N H sing N N 125 GLY N H2 sing N N 126 GLY CA C sing N N 127 GLY CA HA2 sing N N 128 GLY CA HA3 sing N N 129 GLY C O doub N N 130 GLY C OXT sing N N 131 GLY OXT HXT sing N N 132 HIS N CA sing N N 133 HIS N H sing N N 134 HIS N H2 sing N N 135 HIS CA C sing N N 136 HIS CA CB sing N N 137 HIS CA HA sing N N 138 HIS C O doub N N 139 HIS C OXT sing N N 140 HIS CB CG sing N N 141 HIS CB HB2 sing N N 142 HIS CB HB3 sing N N 143 HIS CG ND1 sing Y N 144 HIS CG CD2 doub Y N 145 HIS ND1 CE1 doub Y N 146 HIS ND1 HD1 sing N N 147 HIS CD2 NE2 sing Y N 148 HIS CD2 HD2 sing N N 149 HIS CE1 NE2 sing Y N 150 HIS CE1 HE1 sing N N 151 HIS NE2 HE2 sing N N 152 HIS OXT HXT sing N N 153 HOH O H1 sing N N 154 HOH O H2 sing N N 155 ILE N CA sing N N 156 ILE N H sing N N 157 ILE N H2 sing N N 158 ILE CA C sing N N 159 ILE CA CB sing N N 160 ILE CA HA sing N N 161 ILE C O doub N N 162 ILE C OXT sing N N 163 ILE CB CG1 sing N N 164 ILE CB CG2 sing N N 165 ILE CB HB sing N N 166 ILE CG1 CD1 sing N N 167 ILE CG1 HG12 sing N N 168 ILE CG1 HG13 sing N N 169 ILE CG2 HG21 sing N N 170 ILE CG2 HG22 sing N N 171 ILE CG2 HG23 sing N N 172 ILE CD1 HD11 sing N N 173 ILE CD1 HD12 sing N N 174 ILE CD1 HD13 sing N N 175 ILE OXT HXT sing N N 176 LEU N CA sing N N 177 LEU N H sing N N 178 LEU N H2 sing N N 179 LEU CA C sing N N 180 LEU CA CB sing N N 181 LEU CA HA sing N N 182 LEU C O doub N N 183 LEU C OXT sing N N 184 LEU CB CG sing N N 185 LEU CB HB2 sing N N 186 LEU CB HB3 sing N N 187 LEU CG CD1 sing N N 188 LEU CG CD2 sing N N 189 LEU CG HG sing N N 190 LEU CD1 HD11 sing N N 191 LEU CD1 HD12 sing N N 192 LEU CD1 HD13 sing N N 193 LEU CD2 HD21 sing N N 194 LEU CD2 HD22 sing N N 195 LEU CD2 HD23 sing N N 196 LEU OXT HXT sing N N 197 LYS N CA sing N N 198 LYS N H sing N N 199 LYS N H2 sing N N 200 LYS CA C sing N N 201 LYS CA CB sing N N 202 LYS CA HA sing N N 203 LYS C O doub N N 204 LYS C OXT sing N N 205 LYS CB CG sing N N 206 LYS CB HB2 sing N N 207 LYS CB HB3 sing N N 208 LYS CG CD sing N N 209 LYS CG HG2 sing N N 210 LYS CG HG3 sing N N 211 LYS CD CE sing N N 212 LYS CD HD2 sing N N 213 LYS CD HD3 sing N N 214 LYS CE NZ sing N N 215 LYS CE HE2 sing N N 216 LYS CE HE3 sing N N 217 LYS NZ HZ1 sing N N 218 LYS NZ HZ2 sing N N 219 LYS NZ HZ3 sing N N 220 LYS OXT HXT sing N N 221 MET N CA sing N N 222 MET N H sing N N 223 MET N H2 sing N N 224 MET CA C sing N N 225 MET CA CB sing N N 226 MET CA HA sing N N 227 MET C O doub N N 228 MET C OXT sing N N 229 MET CB CG sing N N 230 MET CB HB2 sing N N 231 MET CB HB3 sing N N 232 MET CG SD sing N N 233 MET CG HG2 sing N N 234 MET CG HG3 sing N N 235 MET SD CE sing N N 236 MET CE HE1 sing N N 237 MET CE HE2 sing N N 238 MET CE HE3 sing N N 239 MET OXT HXT sing N N 240 PHE N CA sing N N 241 PHE N H sing N N 242 PHE N H2 sing N N 243 PHE CA C sing N N 244 PHE CA CB sing N N 245 PHE CA HA sing N N 246 PHE C O doub N N 247 PHE C OXT sing N N 248 PHE CB CG sing N N 249 PHE CB HB2 sing N N 250 PHE CB HB3 sing N N 251 PHE CG CD1 doub Y N 252 PHE CG CD2 sing Y N 253 PHE CD1 CE1 sing Y N 254 PHE CD1 HD1 sing N N 255 PHE CD2 CE2 doub Y N 256 PHE CD2 HD2 sing N N 257 PHE CE1 CZ doub Y N 258 PHE CE1 HE1 sing N N 259 PHE CE2 CZ sing Y N 260 PHE CE2 HE2 sing N N 261 PHE CZ HZ sing N N 262 PHE OXT HXT sing N N 263 PRO N CA sing N N 264 PRO N CD sing N N 265 PRO N H sing N N 266 PRO CA C sing N N 267 PRO CA CB sing N N 268 PRO CA HA sing N N 269 PRO C O doub N N 270 PRO C OXT sing N N 271 PRO CB CG sing N N 272 PRO CB HB2 sing N N 273 PRO CB HB3 sing N N 274 PRO CG CD sing N N 275 PRO CG HG2 sing N N 276 PRO CG HG3 sing N N 277 PRO CD HD2 sing N N 278 PRO CD HD3 sing N N 279 PRO OXT HXT sing N N 280 SER N CA sing N N 281 SER N H sing N N 282 SER N H2 sing N N 283 SER CA C sing N N 284 SER CA CB sing N N 285 SER CA HA sing N N 286 SER C O doub N N 287 SER C OXT sing N N 288 SER CB OG sing N N 289 SER CB HB2 sing N N 290 SER CB HB3 sing N N 291 SER OG HG sing N N 292 SER OXT HXT sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TRP N CA sing N N 310 TRP N H sing N N 311 TRP N H2 sing N N 312 TRP CA C sing N N 313 TRP CA CB sing N N 314 TRP CA HA sing N N 315 TRP C O doub N N 316 TRP C OXT sing N N 317 TRP CB CG sing N N 318 TRP CB HB2 sing N N 319 TRP CB HB3 sing N N 320 TRP CG CD1 doub Y N 321 TRP CG CD2 sing Y N 322 TRP CD1 NE1 sing Y N 323 TRP CD1 HD1 sing N N 324 TRP CD2 CE2 doub Y N 325 TRP CD2 CE3 sing Y N 326 TRP NE1 CE2 sing Y N 327 TRP NE1 HE1 sing N N 328 TRP CE2 CZ2 sing Y N 329 TRP CE3 CZ3 doub Y N 330 TRP CE3 HE3 sing N N 331 TRP CZ2 CH2 doub Y N 332 TRP CZ2 HZ2 sing N N 333 TRP CZ3 CH2 sing Y N 334 TRP CZ3 HZ3 sing N N 335 TRP CH2 HH2 sing N N 336 TRP OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 VAL N CA sing N N 362 VAL N H sing N N 363 VAL N H2 sing N N 364 VAL CA C sing N N 365 VAL CA CB sing N N 366 VAL CA HA sing N N 367 VAL C O doub N N 368 VAL C OXT sing N N 369 VAL CB CG1 sing N N 370 VAL CB CG2 sing N N 371 VAL CB HB sing N N 372 VAL CG1 HG11 sing N N 373 VAL CG1 HG12 sing N N 374 VAL CG1 HG13 sing N N 375 VAL CG2 HG21 sing N N 376 VAL CG2 HG22 sing N N 377 VAL CG2 HG23 sing N N 378 VAL OXT HXT sing N N 379 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE2/S2 (INORGANIC) CLUSTER' FES 3 'SODIUM ION' NA 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1I7H _pdbx_initial_refinement_model.details 'PDB ENTRY 1i7h' #