HEADER OXIDOREDUCTASE 30-JUN-10 3AK1 TITLE SUPEROXIDE DISMUTASE FROM AEROPYRUM PERNIX K1, APO-FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN/FE]; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 3 ORGANISM_TAXID: 272557; SOURCE 4 STRAIN: K1; SOURCE 5 GENE: APE0741; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11 KEYWDS SUPEROXIDE DISMUTASE, CAMBIALISTIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.NAKAMURA,K.UEGAKI REVDAT 3 01-NOV-23 3AK1 1 REMARK REVDAT 2 23-FEB-11 3AK1 1 JRNL REVDAT 1 02-FEB-11 3AK1 0 JRNL AUTH T.NAKAMURA,K.TORIKAI,K.UEGAKI,J.MORITA,K.MACHIDA,A.SUZUKI, JRNL AUTH 2 Y.KAWATA JRNL TITL CRYSTAL STRUCTURE OF THE CAMBIALISTIC SUPEROXIDE DISMUTASE JRNL TITL 2 FROM AEROPYRUM PERNIX K1 - INSIGHTS INTO THE ENZYME JRNL TITL 3 MECHANISM AND STABILITY JRNL REF FEBS J. V. 278 598 2011 JRNL REFN ISSN 1742-464X JRNL PMID 21182595 JRNL DOI 10.1111/J.1742-4658.2010.07977.X REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 98731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5190 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6589 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 342 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6910 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.519 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7282 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9854 ; 1.136 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 873 ; 5.738 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 349 ;36.567 ;24.327 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1220 ;13.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.342 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1031 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5549 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4013 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4951 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 604 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.100 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4417 ; 0.814 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6894 ; 0.844 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3351 ; 1.487 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2946 ; 2.246 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000029347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-2040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103949 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1WB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 10% PEG 6000, 8% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.12550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 213 REMARK 465 GLN A 214 REMARK 465 GLN B 214 REMARK 465 GLN C 214 REMARK 465 PRO D 213 REMARK 465 GLN D 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 227 O HOH D 355 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 34 -61.10 -101.62 REMARK 500 LYS A 149 -126.58 50.04 REMARK 500 ASN A 151 32.28 -146.44 REMARK 500 LEU A 153 -15.02 79.97 REMARK 500 TYR A 171 -20.22 -145.31 REMARK 500 LYS A 176 -132.55 48.32 REMARK 500 SER B 3 -123.94 89.49 REMARK 500 LYS B 34 -63.95 -102.19 REMARK 500 LYS B 149 -124.66 48.73 REMARK 500 ASN B 151 30.52 -145.90 REMARK 500 LEU B 153 -12.62 81.96 REMARK 500 TYR B 171 -20.62 -146.48 REMARK 500 LYS B 176 -136.22 50.44 REMARK 500 LYS C 34 -62.25 -100.85 REMARK 500 LYS C 149 -124.84 50.86 REMARK 500 ASN C 151 31.32 -143.67 REMARK 500 LEU C 153 -16.60 85.10 REMARK 500 TYR C 171 -23.67 -144.64 REMARK 500 LYS C 176 -131.65 55.26 REMARK 500 PRO C 208 9.09 -65.14 REMARK 500 LEU C 211 -81.28 -65.91 REMARK 500 LEU C 212 78.20 54.57 REMARK 500 LYS D 34 -60.42 -104.75 REMARK 500 LYS D 149 -125.07 46.58 REMARK 500 ASN D 151 30.10 -145.82 REMARK 500 LEU D 153 -15.70 85.67 REMARK 500 TYR D 171 -19.57 -148.88 REMARK 500 LYS D 176 -134.48 52.52 REMARK 500 PRO D 208 47.40 -76.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 220 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AK2 RELATED DB: PDB REMARK 900 SAME PROTEIN, MN-BOUND FORM REMARK 900 RELATED ID: 3AK3 RELATED DB: PDB REMARK 900 SAME PROTEIN, FE-BOUND FORM DBREF 3AK1 A 1 214 UNP Q9Y8H8 SODF_AERPE 1 214 DBREF 3AK1 B 1 214 UNP Q9Y8H8 SODF_AERPE 1 214 DBREF 3AK1 C 1 214 UNP Q9Y8H8 SODF_AERPE 1 214 DBREF 3AK1 D 1 214 UNP Q9Y8H8 SODF_AERPE 1 214 SEQRES 1 A 214 MET VAL SER PHE LYS ARG TYR GLU LEU PRO PRO LEU PRO SEQRES 2 A 214 TYR ASN TYR ASN ALA LEU GLU PRO TYR ILE ILE GLU GLU SEQRES 3 A 214 ILE MET LYS LEU HIS HIS GLN LYS HIS HIS ASN THR TYR SEQRES 4 A 214 VAL LYS GLY ALA ASN ALA ALA LEU GLU LYS ILE GLU LYS SEQRES 5 A 214 HIS LEU LYS GLY GLU ILE GLN ILE ASP VAL ARG ALA VAL SEQRES 6 A 214 MET ARG ASP PHE SER PHE ASN TYR ALA GLY HIS ILE MET SEQRES 7 A 214 HIS THR ILE PHE TRP PRO ASN MET ALA PRO PRO GLY LYS SEQRES 8 A 214 GLY GLY GLY THR PRO GLY GLY ARG VAL ALA ASP LEU ILE SEQRES 9 A 214 GLU LYS GLN PHE GLY GLY PHE GLU LYS PHE LYS ALA LEU SEQRES 10 A 214 PHE SER ALA ALA ALA LYS THR VAL GLU GLY VAL GLY TRP SEQRES 11 A 214 GLY VAL LEU ALA PHE ASP PRO LEU THR GLU GLU LEU ARG SEQRES 12 A 214 ILE LEU GLN VAL GLU LYS HIS ASN VAL LEU MET THR ALA SEQRES 13 A 214 GLY LEU VAL PRO ILE LEU VAL ILE ASP VAL TRP GLU HIS SEQRES 14 A 214 ALA TYR TYR LEU GLN TYR LYS ASN ASP ARG GLY SER TYR SEQRES 15 A 214 VAL GLU ASN TRP TRP ASN VAL VAL ASN TRP ASP ASP VAL SEQRES 16 A 214 GLU LYS ARG LEU GLU GLN ALA LEU ASN ASN ALA LYS PRO SEQRES 17 A 214 LEU TYR LEU LEU PRO GLN SEQRES 1 B 214 MET VAL SER PHE LYS ARG TYR GLU LEU PRO PRO LEU PRO SEQRES 2 B 214 TYR ASN TYR ASN ALA LEU GLU PRO TYR ILE ILE GLU GLU SEQRES 3 B 214 ILE MET LYS LEU HIS HIS GLN LYS HIS HIS ASN THR TYR SEQRES 4 B 214 VAL LYS GLY ALA ASN ALA ALA LEU GLU LYS ILE GLU LYS SEQRES 5 B 214 HIS LEU LYS GLY GLU ILE GLN ILE ASP VAL ARG ALA VAL SEQRES 6 B 214 MET ARG ASP PHE SER PHE ASN TYR ALA GLY HIS ILE MET SEQRES 7 B 214 HIS THR ILE PHE TRP PRO ASN MET ALA PRO PRO GLY LYS SEQRES 8 B 214 GLY GLY GLY THR PRO GLY GLY ARG VAL ALA ASP LEU ILE SEQRES 9 B 214 GLU LYS GLN PHE GLY GLY PHE GLU LYS PHE LYS ALA LEU SEQRES 10 B 214 PHE SER ALA ALA ALA LYS THR VAL GLU GLY VAL GLY TRP SEQRES 11 B 214 GLY VAL LEU ALA PHE ASP PRO LEU THR GLU GLU LEU ARG SEQRES 12 B 214 ILE LEU GLN VAL GLU LYS HIS ASN VAL LEU MET THR ALA SEQRES 13 B 214 GLY LEU VAL PRO ILE LEU VAL ILE ASP VAL TRP GLU HIS SEQRES 14 B 214 ALA TYR TYR LEU GLN TYR LYS ASN ASP ARG GLY SER TYR SEQRES 15 B 214 VAL GLU ASN TRP TRP ASN VAL VAL ASN TRP ASP ASP VAL SEQRES 16 B 214 GLU LYS ARG LEU GLU GLN ALA LEU ASN ASN ALA LYS PRO SEQRES 17 B 214 LEU TYR LEU LEU PRO GLN SEQRES 1 C 214 MET VAL SER PHE LYS ARG TYR GLU LEU PRO PRO LEU PRO SEQRES 2 C 214 TYR ASN TYR ASN ALA LEU GLU PRO TYR ILE ILE GLU GLU SEQRES 3 C 214 ILE MET LYS LEU HIS HIS GLN LYS HIS HIS ASN THR TYR SEQRES 4 C 214 VAL LYS GLY ALA ASN ALA ALA LEU GLU LYS ILE GLU LYS SEQRES 5 C 214 HIS LEU LYS GLY GLU ILE GLN ILE ASP VAL ARG ALA VAL SEQRES 6 C 214 MET ARG ASP PHE SER PHE ASN TYR ALA GLY HIS ILE MET SEQRES 7 C 214 HIS THR ILE PHE TRP PRO ASN MET ALA PRO PRO GLY LYS SEQRES 8 C 214 GLY GLY GLY THR PRO GLY GLY ARG VAL ALA ASP LEU ILE SEQRES 9 C 214 GLU LYS GLN PHE GLY GLY PHE GLU LYS PHE LYS ALA LEU SEQRES 10 C 214 PHE SER ALA ALA ALA LYS THR VAL GLU GLY VAL GLY TRP SEQRES 11 C 214 GLY VAL LEU ALA PHE ASP PRO LEU THR GLU GLU LEU ARG SEQRES 12 C 214 ILE LEU GLN VAL GLU LYS HIS ASN VAL LEU MET THR ALA SEQRES 13 C 214 GLY LEU VAL PRO ILE LEU VAL ILE ASP VAL TRP GLU HIS SEQRES 14 C 214 ALA TYR TYR LEU GLN TYR LYS ASN ASP ARG GLY SER TYR SEQRES 15 C 214 VAL GLU ASN TRP TRP ASN VAL VAL ASN TRP ASP ASP VAL SEQRES 16 C 214 GLU LYS ARG LEU GLU GLN ALA LEU ASN ASN ALA LYS PRO SEQRES 17 C 214 LEU TYR LEU LEU PRO GLN SEQRES 1 D 214 MET VAL SER PHE LYS ARG TYR GLU LEU PRO PRO LEU PRO SEQRES 2 D 214 TYR ASN TYR ASN ALA LEU GLU PRO TYR ILE ILE GLU GLU SEQRES 3 D 214 ILE MET LYS LEU HIS HIS GLN LYS HIS HIS ASN THR TYR SEQRES 4 D 214 VAL LYS GLY ALA ASN ALA ALA LEU GLU LYS ILE GLU LYS SEQRES 5 D 214 HIS LEU LYS GLY GLU ILE GLN ILE ASP VAL ARG ALA VAL SEQRES 6 D 214 MET ARG ASP PHE SER PHE ASN TYR ALA GLY HIS ILE MET SEQRES 7 D 214 HIS THR ILE PHE TRP PRO ASN MET ALA PRO PRO GLY LYS SEQRES 8 D 214 GLY GLY GLY THR PRO GLY GLY ARG VAL ALA ASP LEU ILE SEQRES 9 D 214 GLU LYS GLN PHE GLY GLY PHE GLU LYS PHE LYS ALA LEU SEQRES 10 D 214 PHE SER ALA ALA ALA LYS THR VAL GLU GLY VAL GLY TRP SEQRES 11 D 214 GLY VAL LEU ALA PHE ASP PRO LEU THR GLU GLU LEU ARG SEQRES 12 D 214 ILE LEU GLN VAL GLU LYS HIS ASN VAL LEU MET THR ALA SEQRES 13 D 214 GLY LEU VAL PRO ILE LEU VAL ILE ASP VAL TRP GLU HIS SEQRES 14 D 214 ALA TYR TYR LEU GLN TYR LYS ASN ASP ARG GLY SER TYR SEQRES 15 D 214 VAL GLU ASN TRP TRP ASN VAL VAL ASN TRP ASP ASP VAL SEQRES 16 D 214 GLU LYS ARG LEU GLU GLN ALA LEU ASN ASN ALA LYS PRO SEQRES 17 D 214 LEU TYR LEU LEU PRO GLN HET EDO A 215 4 HET EDO A 216 4 HET EDO A 217 4 HET EDO A 218 4 HET EDO A 219 4 HET EDO A 220 4 HET EDO A 221 4 HET EDO A 222 4 HET EDO A 223 4 HET EDO B 215 4 HET EDO B 216 4 HET EDO B 217 4 HET EDO B 218 4 HET EDO B 219 4 HET EDO B 220 4 HET EDO C 215 4 HET EDO C 216 4 HET EDO C 217 4 HET EDO C 218 4 HET EDO C 219 4 HET EDO D 215 4 HET EDO D 216 4 HET EDO D 217 4 HET EDO D 218 4 HET EDO D 219 4 HET EDO D 220 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 26(C2 H6 O2) FORMUL 31 HOH *630(H2 O) HELIX 1 1 ILE A 24 LYS A 34 1 11 HELIX 2 2 LYS A 34 LYS A 55 1 22 HELIX 3 3 ASP A 61 TRP A 83 1 23 HELIX 4 4 GLY A 97 GLY A 109 1 13 HELIX 5 5 GLY A 110 THR A 124 1 15 HELIX 6 6 TRP A 167 ALA A 170 5 4 HELIX 7 7 TYR A 171 LYS A 176 1 6 HELIX 8 8 ASP A 178 TRP A 187 1 10 HELIX 9 9 ASN A 188 VAL A 190 5 3 HELIX 10 10 ASN A 191 LEU A 212 1 22 HELIX 11 11 ILE B 24 LYS B 34 1 11 HELIX 12 12 LYS B 34 LYS B 55 1 22 HELIX 13 13 ASP B 61 TRP B 83 1 23 HELIX 14 14 GLY B 97 GLY B 109 1 13 HELIX 15 15 GLY B 110 THR B 124 1 15 HELIX 16 16 TRP B 167 ALA B 170 5 4 HELIX 17 17 TYR B 171 LYS B 176 1 6 HELIX 18 18 ASP B 178 TRP B 187 1 10 HELIX 19 19 ASN B 188 VAL B 190 5 3 HELIX 20 20 ASN B 191 ALA B 206 1 16 HELIX 21 21 LYS B 207 TYR B 210 5 4 HELIX 22 22 ILE C 24 LYS C 34 1 11 HELIX 23 23 LYS C 34 LYS C 55 1 22 HELIX 24 24 ASP C 61 TRP C 83 1 23 HELIX 25 25 GLY C 97 GLY C 109 1 13 HELIX 26 26 GLY C 110 THR C 124 1 15 HELIX 27 27 TRP C 167 ALA C 170 5 4 HELIX 28 28 TYR C 171 LYS C 176 1 6 HELIX 29 29 ASP C 178 TRP C 187 1 10 HELIX 30 30 ASN C 188 VAL C 190 5 3 HELIX 31 31 ASN C 191 ALA C 206 1 16 HELIX 32 32 ALA C 206 LEU C 211 1 6 HELIX 33 33 ILE D 24 LYS D 34 1 11 HELIX 34 34 LYS D 34 LYS D 55 1 22 HELIX 35 35 ASP D 61 TRP D 83 1 23 HELIX 36 36 GLY D 97 GLY D 109 1 13 HELIX 37 37 GLY D 110 THR D 124 1 15 HELIX 38 38 TRP D 167 ALA D 170 5 4 HELIX 39 39 TYR D 171 LYS D 176 1 6 HELIX 40 40 ASP D 178 TRP D 187 1 10 HELIX 41 41 ASN D 188 VAL D 190 5 3 HELIX 42 42 ASN D 191 ALA D 206 1 16 SHEET 1 A 3 GLU A 141 GLU A 148 0 SHEET 2 A 3 GLY A 129 ASP A 136 -1 N ALA A 134 O ARG A 143 SHEET 3 A 3 VAL A 159 ASP A 165 -1 O LEU A 162 N LEU A 133 SHEET 1 B 3 GLU B 141 GLU B 148 0 SHEET 2 B 3 GLY B 129 ASP B 136 -1 N ALA B 134 O ARG B 143 SHEET 3 B 3 VAL B 159 ASP B 165 -1 O ILE B 161 N LEU B 133 SHEET 1 C 3 GLU C 141 GLU C 148 0 SHEET 2 C 3 GLY C 129 ASP C 136 -1 N ASP C 136 O GLU C 141 SHEET 3 C 3 VAL C 159 ASP C 165 -1 O LEU C 162 N LEU C 133 SHEET 1 D 3 LEU D 142 GLU D 148 0 SHEET 2 D 3 GLY D 129 PHE D 135 -1 N ALA D 134 O ARG D 143 SHEET 3 D 3 VAL D 159 ASP D 165 -1 O LEU D 162 N LEU D 133 CISPEP 1 GLU A 20 PRO A 21 0 8.92 CISPEP 2 GLU B 20 PRO B 21 0 5.43 CISPEP 3 GLU C 20 PRO C 21 0 4.38 CISPEP 4 GLU D 20 PRO D 21 0 5.14 SITE 1 AC1 5 PRO A 11 LEU A 12 TYR A 14 TYR A 16 SITE 2 AC1 5 HOH A 311 SITE 1 AC2 6 GLU A 20 ILE B 24 LEU B 173 GLN B 174 SITE 2 AC2 6 EDO B 217 HOH B 424 SITE 1 AC3 4 ASN A 15 ASN A 17 EDO B 216 EDO B 217 SITE 1 AC4 6 ILE A 23 MET A 28 HIS A 31 PHE A 82 SITE 2 AC4 6 ALA A 170 TYR A 182 SITE 1 AC5 6 HIS A 35 THR A 38 HOH A 259 HOH A 290 SITE 2 AC5 6 HOH A 447 ASN C 177 SITE 1 AC6 6 LEU A 47 GLU A 51 HOH A 396 HOH A 601 SITE 2 AC6 6 GLN B 107 ARG B 143 SITE 1 AC7 6 HIS A 53 HOH A 271 HOH A 538 ALA B 116 SITE 2 AC7 6 LEU B 117 ALA B 120 SITE 1 AC8 5 ARG A 143 ILE A 144 HOH A 508 LEU B 47 SITE 2 AC8 5 PHE B 69 SITE 1 AC9 5 GLY A 127 GLU A 168 ARG A 179 HOH A 567 SITE 2 AC9 5 TRP C 167 SITE 1 BC1 6 PRO B 11 LEU B 12 TYR B 14 TYR B 16 SITE 2 BC1 6 HIS B 32 HOH B 272 SITE 1 BC2 5 EDO A 217 PRO B 21 ASN B 185 EDO B 217 SITE 2 BC2 5 HOH B 221 SITE 1 BC3 8 ASN A 17 GLU A 20 EDO A 216 EDO A 217 SITE 2 BC3 8 HOH A 300 GLN B 174 EDO B 216 HOH B 464 SITE 1 BC4 5 ALA B 64 ASP B 68 HOH B 225 HOH B 257 SITE 2 BC4 5 ASP C 61 SITE 1 BC5 4 GLU B 148 LYS B 149 GLU D 148 LYS D 149 SITE 1 BC6 9 VAL B 125 GLY B 127 GLU B 168 ARG B 179 SITE 2 BC6 9 HOH B 336 HOH B 513 TRP D 167 HOH D 293 SITE 3 BC6 9 HOH D 586 SITE 1 BC7 3 GLU A 148 GLU C 148 EDO C 218 SITE 1 BC8 8 ALA B 64 ARG B 67 ASP B 68 HOH B 248 SITE 2 BC8 8 ALA C 64 ARG C 67 ASP C 68 HOH C 263 SITE 1 BC9 7 GLN C 107 PHE C 108 LEU C 142 ARG C 143 SITE 2 BC9 7 HOH C 284 HOH C 289 HOH C 374 SITE 1 CC1 9 VAL A 128 LYS A 149 GLU C 126 GLY C 127 SITE 2 CC1 9 VAL C 128 GLU C 148 LYS C 149 EDO C 215 SITE 3 CC1 9 HOH C 400 SITE 1 CC2 4 TYR C 7 GLU C 8 HIS C 76 HOH C 477 SITE 1 CC3 4 PRO D 11 LEU D 12 TYR D 14 TYR D 16 SITE 1 CC4 8 ASN B 177 LYS D 34 HIS D 35 THR D 38 SITE 2 CC4 8 HOH D 266 HOH D 293 HOH D 569 HOH D 611 SITE 1 CC5 2 LYS D 55 GLU D 57 SITE 1 CC6 6 PRO D 96 GLY D 97 GLY D 98 TRP D 192 SITE 2 CC6 6 ASP D 193 GLU D 196 SITE 1 CC7 7 HIS B 35 GLU D 168 TYR D 171 TYR D 172 SITE 2 CC7 7 ASN D 177 HOH D 270 HOH D 387 SITE 1 CC8 4 GLY D 56 ILE D 58 GLN D 59 HOH D 239 CRYST1 69.260 72.251 76.652 90.00 90.99 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014438 0.000000 0.000250 0.00000 SCALE2 0.000000 0.013841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013048 0.00000