HEADER TOXIN 12-AUG-10 3AM2 TITLE CLOSTRIDIUM PERFRINGENS ENTEROTOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT-LABILE ENTEROTOXIN B CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 GENE: CPE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PORE FORMING TOXINS, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KITADOKORO,K.NISHIMURA,S.KAMITANI,J.KIMURA,A.FUKUI,H.ABE, AUTHOR 2 Y.HORIGUCHI REVDAT 3 01-NOV-23 3AM2 1 REMARK SEQADV REVDAT 2 29-JUN-11 3AM2 1 JRNL REVDAT 1 13-APR-11 3AM2 0 JRNL AUTH K.KITADOKORO,K.NISHIMURA,S.KAMITANI,A.FUKUI-MIYAZAKI, JRNL AUTH 2 H.TOSHIMA,H.ABE,Y.KAMATA,Y.SUGITA-KONISHI,S.YAMAMOTO, JRNL AUTH 3 H.KARATANI,Y.HORIGUCHI JRNL TITL CRYSTAL STRUCTURE OF CLOSTRIDIUM PERFRINGENS ENTEROTOXIN JRNL TITL 2 DISPLAYS FEATURES OF {BETA}-PORE-FORMING TOXINS JRNL REF J.BIOL.CHEM. V. 286 19549 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21489981 JRNL DOI 10.1074/JBC.M111.228478 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 857 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.5740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2236 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.549 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.255 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.502 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2285 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3104 ; 1.637 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 6.970 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;37.167 ;25.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 380 ;18.374 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;17.736 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 352 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1724 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1414 ; 0.791 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2287 ; 1.583 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 871 ; 2.275 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 817 ; 3.426 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000029417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12081 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QUO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.1M TRIS-HCL, PH 8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.51500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.51500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.51500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.51500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 50.51500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 50.51500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 50.51500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 50.51500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 50.51500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 50.51500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 50.51500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 50.51500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 50.51500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 50.51500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 50.51500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 50.51500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 UNK UNX A 501 LIES ON A SPECIAL POSITION. REMARK 375 UNK UNX A 502 LIES ON A SPECIAL POSITION. REMARK 375 UNK UNX A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 ASN A 7 REMARK 465 PRO A 8 REMARK 465 MET A 9 REMARK 465 VAL A 10 REMARK 465 PHE A 11 REMARK 465 GLU A 12 REMARK 465 ASN A 13 REMARK 465 ALA A 14 REMARK 465 LYS A 15 REMARK 465 GLU A 16 REMARK 465 VAL A 17 REMARK 465 PHE A 18 REMARK 465 LEU A 19 REMARK 465 ILE A 20 REMARK 465 SER A 21 REMARK 465 GLU A 22 REMARK 465 ASP A 23 REMARK 465 LEU A 24 REMARK 465 LYS A 25 REMARK 465 THR A 26 REMARK 465 PRO A 27 REMARK 465 ILE A 28 REMARK 465 ASN A 29 REMARK 465 ILE A 30 REMARK 465 THR A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 ASN A 34 REMARK 465 SER A 35 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 186 CB CYS A 186 SG 0.202 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 186 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 CYS A 186 CA - CB - SG ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 65 -36.69 -39.03 REMARK 500 THR A 159 -8.18 -141.70 REMARK 500 PRO A 191 137.64 -35.14 REMARK 500 SER A 217 -9.44 -59.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 DBREF 3AM2 A 1 319 UNP P01558 ELTB_CLOPE 1 319 SEQADV 3AM2 LEU A 320 UNP P01558 EXPRESSION TAG SEQADV 3AM2 GLU A 321 UNP P01558 EXPRESSION TAG SEQADV 3AM2 HIS A 322 UNP P01558 EXPRESSION TAG SEQADV 3AM2 HIS A 323 UNP P01558 EXPRESSION TAG SEQADV 3AM2 HIS A 324 UNP P01558 EXPRESSION TAG SEQADV 3AM2 HIS A 325 UNP P01558 EXPRESSION TAG SEQADV 3AM2 HIS A 326 UNP P01558 EXPRESSION TAG SEQADV 3AM2 HIS A 327 UNP P01558 EXPRESSION TAG SEQADV 3AM2 HIS A 328 UNP P01558 EXPRESSION TAG SEQRES 1 A 328 MET LEU SER ASN ASN LEU ASN PRO MET VAL PHE GLU ASN SEQRES 2 A 328 ALA LYS GLU VAL PHE LEU ILE SER GLU ASP LEU LYS THR SEQRES 3 A 328 PRO ILE ASN ILE THR ASN SER ASN SER ASN LEU SER ASP SEQRES 4 A 328 GLY LEU TYR VAL ILE ASP LYS GLY ASP GLY TRP ILE LEU SEQRES 5 A 328 GLY GLU PRO SER VAL VAL SER SER GLN ILE LEU ASN PRO SEQRES 6 A 328 ASN GLU THR GLY THR PHE SER GLN SER LEU THR LYS SER SEQRES 7 A 328 LYS GLU VAL SER ILE ASN VAL ASN PHE SER VAL GLY PHE SEQRES 8 A 328 THR SER GLU PHE ILE GLN ALA SER VAL GLU TYR GLY PHE SEQRES 9 A 328 GLY ILE THR ILE GLY GLU GLN ASN THR ILE GLU ARG SER SEQRES 10 A 328 VAL SER THR THR ALA GLY PRO ASN GLU TYR VAL TYR TYR SEQRES 11 A 328 LYS VAL TYR ALA THR TYR ARG LYS TYR GLN ALA ILE ARG SEQRES 12 A 328 ILE SER HIS GLY ASN ILE SER ASP ASP GLY SER ILE TYR SEQRES 13 A 328 LYS LEU THR GLY ILE TRP LEU SER LYS THR SER ALA ASP SEQRES 14 A 328 SER LEU GLY ASN ILE ASP GLN GLY SER LEU ILE GLU THR SEQRES 15 A 328 GLY GLU ARG CYS VAL LEU THR VAL PRO SER THR ASP ILE SEQRES 16 A 328 GLU LYS GLU ILE LEU ASP LEU ALA ALA ALA THR GLU ARG SEQRES 17 A 328 LEU ASN LEU THR ASP ALA LEU ASN SER ASN PRO ALA GLY SEQRES 18 A 328 ASN LEU TYR ASP TRP ARG SER SER ASN SER TYR PRO TRP SEQRES 19 A 328 THR GLN LYS LEU ASN LEU HIS LEU THR ILE THR ALA THR SEQRES 20 A 328 GLY GLN LYS TYR ARG ILE LEU ALA SER LYS ILE VAL ASP SEQRES 21 A 328 PHE ASN ILE TYR SER ASN ASN PHE ASN ASN LEU VAL LYS SEQRES 22 A 328 LEU GLU GLN SER LEU GLY ASP GLY VAL LYS ASP HIS TYR SEQRES 23 A 328 VAL ASP ILE SER LEU ASP ALA GLY GLN TYR VAL LEU VAL SEQRES 24 A 328 MET LYS ALA ASN SER SER TYR SER GLY ASN TYR PRO TYR SEQRES 25 A 328 SER ILE LEU PHE GLN LYS PHE LEU GLU HIS HIS HIS HIS SEQRES 26 A 328 HIS HIS HIS HET UNX A 501 1 HET UNX A 502 1 HET UNX A 503 1 HET GOL A 504 6 HETNAM UNX UNKNOWN ATOM OR ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 UNX 3(X) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *56(H2 O) HELIX 1 1 GLY A 53 PRO A 55 5 3 HELIX 2 2 THR A 92 GLY A 105 1 14 HELIX 3 3 GLN A 176 ILE A 180 5 5 HELIX 4 4 LEU A 211 SER A 217 1 7 HELIX 5 5 ASN A 267 ASN A 270 5 4 SHEET 1 A 4 VAL A 57 LEU A 63 0 SHEET 2 A 4 TYR A 127 SER A 145 -1 O VAL A 132 N VAL A 58 SHEET 3 A 4 ASN A 148 ALA A 168 -1 O SER A 164 N LYS A 131 SHEET 4 A 4 GLU A 80 ASN A 86 -1 N GLU A 80 O TYR A 156 SHEET 1 B 4 VAL A 57 LEU A 63 0 SHEET 2 B 4 TYR A 127 SER A 145 -1 O VAL A 132 N VAL A 58 SHEET 3 B 4 GLY A 40 ASP A 45 -1 N ILE A 44 O GLN A 140 SHEET 4 B 4 ILE A 195 ILE A 199 -1 O LYS A 197 N VAL A 43 SHEET 1 C 2 TRP A 50 ILE A 51 0 SHEET 2 C 2 ARG A 185 CYS A 186 -1 O ARG A 185 N ILE A 51 SHEET 1 D 2 THR A 68 SER A 78 0 SHEET 2 D 2 GLN A 111 THR A 121 -1 O VAL A 118 N PHE A 71 SHEET 1 E 5 ALA A 205 ASN A 210 0 SHEET 2 E 5 LEU A 238 ILE A 244 1 O HIS A 241 N GLU A 207 SHEET 3 E 5 GLY A 294 ALA A 302 -1 O TYR A 296 N LEU A 242 SHEET 4 E 5 VAL A 259 SER A 265 -1 N ASN A 262 O VAL A 299 SHEET 5 E 5 VAL A 272 SER A 277 -1 O LEU A 274 N ILE A 263 SHEET 1 F 4 LEU A 223 ARG A 227 0 SHEET 2 F 4 SER A 313 LYS A 318 -1 O PHE A 316 N TYR A 224 SHEET 3 F 4 GLN A 249 ALA A 255 -1 N LEU A 254 O LEU A 315 SHEET 4 F 4 HIS A 285 LEU A 291 -1 O ILE A 289 N TYR A 251 SITE 1 AC1 9 GLY A 40 LEU A 41 ILE A 199 LEU A 200 SITE 2 AC1 9 ASP A 201 LYS A 237 ASN A 239 TYR A 264 SITE 3 AC1 9 VAL A 299 CRYST1 101.030 101.030 101.030 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009898 0.00000