HEADER RNA BINDING PROTEIN/RNA 23-AUG-10 3AMU TITLE CRYSTAL STRUCTURE OF THE TIAS-TRNA(ILE2)-AMPCPP-AGMATINE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TIAS; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (78-MER); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: AF_2259; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 13 ORGANISM_TAXID: 2234; SOURCE 14 OTHER_DETAILS: IN VITRO TRANSCRIPTION USING T7 RNA POLYMERASE, SOURCE 15 SEQUENCE NATURALLY EXIST IN ARCHAEOGLOBUS FULGIDUS KEYWDS TIAS, TRNA(ILE2), MODIFICATION, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.NUMATA,T.OSAWA REVDAT 3 01-NOV-23 3AMU 1 REMARK SEQADV LINK REVDAT 2 19-JUN-13 3AMU 1 JRNL REVDAT 1 19-OCT-11 3AMU 0 JRNL AUTH T.OSAWA,S.KIMURA,N.TERASAKA,H.INANAGA,T.SUZUKI,T.NUMATA JRNL TITL STRUCTURAL BASIS OF TRNA AGMATINYLATION ESSENTIAL FOR AUA JRNL TITL 2 CODON DECODING JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 1275 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 22002223 JRNL DOI 10.1038/NSMB.2144 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 22650.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 772 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2462 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 120 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3247 REMARK 3 NUCLEIC ACID ATOMS : 1665 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.90000 REMARK 3 B22 (A**2) : 6.90000 REMARK 3 B33 (A**2) : -13.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.80 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.05 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.660 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.140 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.550 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.610 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 16.31 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : AGM_PAR.TXT REMARK 3 PARAMETER FILE 4 : APC_PAR.TXT REMARK 3 PARAMETER FILE 5 : TPO-100907.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : AGM_TOP.TXT REMARK 3 TOPOLOGY FILE 4 : APC_TOP.TXT REMARK 3 TOPOLOGY FILE 5 : TPO-100907.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3AMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000029444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15880 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.17700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ID 3AMT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085M TRIS-HCL PH8.5, 0.17M SODIUM REMARK 280 ACETATE, 28% PEG 4000, 15% GLYCEROL , VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.05800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.02900 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.02900 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.05800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 TYR A 51 REMARK 465 LYS A 52 REMARK 465 THR A 53 REMARK 465 ARG A 54 REMARK 465 GLY A 55 REMARK 465 SER A 354 REMARK 465 CYS A 355 REMARK 465 GLY A 356 REMARK 465 ARG A 357 REMARK 465 ARG A 358 REMARK 465 MET A 359 REMARK 465 ARG A 369 REMARK 465 CYS A 370 REMARK 465 LYS A 371 REMARK 465 LYS A 372 REMARK 465 CYS A 373 REMARK 465 ARG A 374 REMARK 465 THR A 375 REMARK 465 LYS A 376 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 11 O1G APC A 421 2.06 REMARK 500 OE2 GLU A 219 NE ARG A 410 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G B 1 P G B 1 OP3 -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 17 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 U B 60 N1 - C1' - C2' ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 9 88.64 43.38 REMARK 500 THR A 10 -16.95 -142.16 REMARK 500 SER A 13 20.27 -71.17 REMARK 500 ARG A 14 6.77 -179.59 REMARK 500 MET A 16 -167.81 -105.64 REMARK 500 LEU A 33 -35.26 -143.42 REMARK 500 GLU A 64 77.19 -158.43 REMARK 500 VAL A 78 -38.40 -39.89 REMARK 500 GLU A 81 -48.70 -133.01 REMARK 500 MET A 84 62.66 -64.86 REMARK 500 ASP A 87 154.16 -43.14 REMARK 500 LEU A 101 11.01 -59.17 REMARK 500 ALA A 102 -72.65 -75.34 REMARK 500 LYS A 104 8.27 -59.33 REMARK 500 ASP A 115 -155.57 -145.12 REMARK 500 PHE A 130 66.93 39.94 REMARK 500 LYS A 137 -136.14 58.57 REMARK 500 LEU A 142 -16.81 -33.32 REMARK 500 ILE A 143 -74.46 -72.70 REMARK 500 TYR A 175 145.44 -176.79 REMARK 500 GLU A 177 -81.66 -6.45 REMARK 500 GLU A 178 -30.85 -24.90 REMARK 500 MET A 183 -72.17 -60.59 REMARK 500 TYR A 188 138.66 -36.67 REMARK 500 GLN A 190 -78.68 -11.27 REMARK 500 ASP A 193 38.45 35.13 REMARK 500 CYS A 198 -76.21 -93.21 REMARK 500 ASN A 199 6.36 -61.71 REMARK 500 ASP A 200 72.58 43.36 REMARK 500 PRO A 206 163.28 -47.08 REMARK 500 VAL A 212 106.74 -49.67 REMARK 500 LEU A 213 -88.95 -70.78 REMARK 500 SER A 230 2.74 -65.79 REMARK 500 PRO A 235 129.73 -34.97 REMARK 500 ASP A 237 -96.04 -79.93 REMARK 500 ALA A 247 46.76 76.50 REMARK 500 MET A 250 21.72 -75.44 REMARK 500 GLU A 256 35.08 -82.49 REMARK 500 GLU A 257 23.75 -161.03 REMARK 500 TYR A 264 28.86 91.30 REMARK 500 PHE A 301 166.93 -45.64 REMARK 500 LYS A 305 -135.14 48.56 REMARK 500 GLN A 306 -14.12 -36.73 REMARK 500 ASP A 329 -4.43 74.76 REMARK 500 VAL A 339 -74.59 -67.70 REMARK 500 CYS A 352 -87.96 -73.62 REMARK 500 LEU A 389 142.89 -38.82 REMARK 500 PRO A 398 -49.73 -25.41 REMARK 500 HIS A 403 -77.73 -49.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 225 0.08 SIDE CHAIN REMARK 500 G B 41 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG2 A 422 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AMT RELATED DB: PDB REMARK 900 RELATED ID: 3AU7 RELATED DB: PDB DBREF 3AMU A 1 420 UNP O28025 O28025_ARCFU 1 420 DBREF 3AMU B 1 76 PDB 3AMU 3AMU 1 76 SEQADV 3AMU MET A -19 UNP O28025 EXPRESSION TAG SEQADV 3AMU GLY A -18 UNP O28025 EXPRESSION TAG SEQADV 3AMU SER A -17 UNP O28025 EXPRESSION TAG SEQADV 3AMU SER A -16 UNP O28025 EXPRESSION TAG SEQADV 3AMU HIS A -15 UNP O28025 EXPRESSION TAG SEQADV 3AMU HIS A -14 UNP O28025 EXPRESSION TAG SEQADV 3AMU HIS A -13 UNP O28025 EXPRESSION TAG SEQADV 3AMU HIS A -12 UNP O28025 EXPRESSION TAG SEQADV 3AMU HIS A -11 UNP O28025 EXPRESSION TAG SEQADV 3AMU HIS A -10 UNP O28025 EXPRESSION TAG SEQADV 3AMU SER A -9 UNP O28025 EXPRESSION TAG SEQADV 3AMU SER A -8 UNP O28025 EXPRESSION TAG SEQADV 3AMU GLY A -7 UNP O28025 EXPRESSION TAG SEQADV 3AMU LEU A -6 UNP O28025 EXPRESSION TAG SEQADV 3AMU VAL A -5 UNP O28025 EXPRESSION TAG SEQADV 3AMU PRO A -4 UNP O28025 EXPRESSION TAG SEQADV 3AMU ARG A -3 UNP O28025 EXPRESSION TAG SEQADV 3AMU GLY A -2 UNP O28025 EXPRESSION TAG SEQADV 3AMU SER A -1 UNP O28025 EXPRESSION TAG SEQADV 3AMU HIS A 0 UNP O28025 EXPRESSION TAG SEQRES 1 A 440 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 440 LEU VAL PRO ARG GLY SER HIS MET ARG VAL TRP VAL GLY SEQRES 3 A 440 ILE ASP ASP THR ASP SER SER ARG GLY MET CYS TPO THR SEQRES 4 A 440 TYR LEU ALA VAL LEU ALA MET GLU ARG VAL GLU ARG GLU SEQRES 5 A 440 LEU GLY LYS VAL ILE GLY PHE PRO ARG LEU ILE ARG LEU SEQRES 6 A 440 ASN PRO THR ILE PRO TYR LYS THR ARG GLY ASN GLY ALA SEQRES 7 A 440 VAL SER PHE LEU VAL GLU VAL ASP ASP VAL GLY GLU LEU SEQRES 8 A 440 VAL ASP VAL VAL ASN GLU VAL ILE ILE GLU HIS ALA MET SEQRES 9 A 440 LEU ASP ASP GLU LYS THR ASN PRO GLY ALA VAL PHE VAL SEQRES 10 A 440 ASP GLU GLU LEU ALA VAL LYS LEU LYS PRO PHE ALA ASP SEQRES 11 A 440 LYS ALA ILE LYS ASP VAL LEU GLN ILE ASP GLU ALA LEU SEQRES 12 A 440 PHE VAL ILE GLY LYS TYR PHE ILE PRO HIS LEU ARG HIS SEQRES 13 A 440 LYS LYS GLY ARG GLY LEU ILE GLY ALA LEU ALA ALA VAL SEQRES 14 A 440 GLY ALA GLU LEU GLU ASP PHE THR LEU GLU LEU ILE ALA SEQRES 15 A 440 TYR ARG TYR PRO GLU ARG PHE GLY THR GLU ARG GLU TYR SEQRES 16 A 440 ASP GLU GLU SER PHE PHE ASP MET ASP TYR GLU LEU TYR SEQRES 17 A 440 PRO GLN THR PHE ASP ASN VAL ASP TRP CYS ASN ASP VAL SEQRES 18 A 440 VAL VAL CYS ILE PRO ASN THR PRO CYS PRO VAL LEU TYR SEQRES 19 A 440 GLY ILE ARG GLY GLU SER VAL GLU ALA LEU TYR LYS ALA SEQRES 20 A 440 MET GLU SER VAL LYS THR GLU PRO VAL ASP ARG ARG MET SEQRES 21 A 440 ILE PHE VAL THR ASN HIS ALA THR ASP MET HIS LEU ILE SEQRES 22 A 440 GLY GLU GLU GLU VAL HIS ARG LEU GLU ASN TYR ARG SER SEQRES 23 A 440 TYR ARG LEU ARG GLY ARG VAL THR LEU GLU PRO TYR ASP SEQRES 24 A 440 ILE GLU GLY GLY HIS VAL PHE PHE GLU ILE ASP THR LYS SEQRES 25 A 440 PHE GLY SER VAL LYS CYS ALA ALA PHE GLU PRO THR LYS SEQRES 26 A 440 GLN PHE ARG ASN VAL ILE ARG LEU LEU ARG LYS GLY ASP SEQRES 27 A 440 VAL VAL GLU VAL TYR GLY SER MET LYS LYS ASP THR ILE SEQRES 28 A 440 ASN LEU GLU LYS ILE GLN ILE VAL GLU LEU ALA GLU ILE SEQRES 29 A 440 TRP VAL GLU LYS ASN PRO ILE CYS PRO SER CYS GLY ARG SEQRES 30 A 440 ARG MET GLU SER ALA GLY ARG GLY GLN GLY PHE ARG CYS SEQRES 31 A 440 LYS LYS CYS ARG THR LYS ALA ASP GLU LYS LEU ARG GLU SEQRES 32 A 440 LYS VAL GLU ARG GLU LEU GLN PRO GLY PHE TYR GLU VAL SEQRES 33 A 440 PRO PRO SER ALA ARG ARG HIS LEU SER LYS PRO LEU ILE SEQRES 34 A 440 ARG MET ASN VAL GLU GLY ARG HIS ILE PHE ARG SEQRES 1 B 78 G G G C C C G U A G C U U SEQRES 2 B 78 A G C C A G G U C A G A G SEQRES 3 B 78 C G C C C G G C U C A U A SEQRES 4 B 78 A C C G G G C G G U C G A SEQRES 5 B 78 G G G U U C G A A U C C C SEQRES 6 B 78 U C C G G G C C C A C C A MODRES 3AMU TPO A 18 THR PHOSPHOTHREONINE HET TPO A 18 11 HET APC A 421 31 HET AG2 A 422 9 HETNAM TPO PHOSPHOTHREONINE HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM AG2 AGMATINE HETSYN TPO PHOSPHONOTHREONINE HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE HETSYN AG2 (4-AMINOBUTYL)GUANIDINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 APC C11 H18 N5 O12 P3 FORMUL 4 AG2 C5 H14 N4 HELIX 1 1 CYS A 17 LEU A 33 1 17 HELIX 2 2 ASP A 67 HIS A 82 1 16 HELIX 3 3 ALA A 102 LYS A 104 5 3 HELIX 4 4 LEU A 105 ASP A 115 1 11 HELIX 5 5 GLN A 118 TYR A 129 1 12 HELIX 6 6 GLY A 141 VAL A 149 1 9 HELIX 7 7 TYR A 165 PHE A 169 5 5 HELIX 8 8 ASP A 176 SER A 179 5 4 HELIX 9 9 PHE A 180 TYR A 188 1 9 HELIX 10 10 SER A 220 SER A 230 1 11 HELIX 11 11 GLU A 256 VAL A 258 5 3 HELIX 12 12 PHE A 301 GLN A 306 5 6 HELIX 13 13 PHE A 307 ARG A 312 1 6 HELIX 14 14 PRO A 397 ARG A 401 5 5 HELIX 15 15 PRO A 407 MET A 411 5 5 SHEET 1 A 9 HIS A 133 ARG A 135 0 SHEET 2 A 9 GLY A 93 ASP A 98 -1 N ALA A 94 O LEU A 134 SHEET 3 A 9 MET A 1 ASP A 8 -1 N TRP A 4 O VAL A 97 SHEET 4 A 9 GLY A 57 VAL A 65 -1 O VAL A 59 N ILE A 7 SHEET 5 A 9 ARG A 41 ARG A 44 -1 N ARG A 41 O SER A 60 SHEET 6 A 9 ARG A 239 THR A 244 1 O VAL A 243 N LEU A 42 SHEET 7 A 9 THR A 157 TYR A 163 -1 N ILE A 161 O MET A 240 SHEET 8 A 9 VAL A 212 GLY A 218 -1 O ILE A 216 N LEU A 160 SHEET 9 A 9 THR A 191 PHE A 192 -1 N PHE A 192 O ARG A 217 SHEET 1 B 7 LEU A 252 GLY A 254 0 SHEET 2 B 7 SER A 266 TYR A 278 1 O SER A 266 N ILE A 253 SHEET 3 B 7 VAL A 285 ASP A 290 -1 O ASP A 290 N ARG A 272 SHEET 4 B 7 SER A 295 ALA A 300 -1 O VAL A 296 N ILE A 289 SHEET 5 B 7 THR A 330 GLU A 340 1 O ILE A 331 N LYS A 297 SHEET 6 B 7 GLY A 392 GLU A 395 -1 O GLY A 392 N ILE A 338 SHEET 7 B 7 ARG A 416 HIS A 417 1 O HIS A 417 N PHE A 393 SHEET 1 C 6 LEU A 252 GLY A 254 0 SHEET 2 C 6 SER A 266 TYR A 278 1 O SER A 266 N ILE A 253 SHEET 3 C 6 VAL A 319 LYS A 327 -1 O GLY A 324 N TYR A 267 SHEET 4 C 6 THR A 330 GLU A 340 -1 O GLN A 337 N GLU A 321 SHEET 5 C 6 GLY A 392 GLU A 395 -1 O GLY A 392 N ILE A 338 SHEET 6 C 6 ARG A 416 HIS A 417 1 O HIS A 417 N PHE A 393 SHEET 1 D 2 ILE A 344 VAL A 346 0 SHEET 2 D 2 GLU A 383 VAL A 385 -1 O GLU A 383 N VAL A 346 LINK C CYS A 17 N TPO A 18 1555 1555 1.33 LINK C TPO A 18 N THR A 19 1555 1555 1.33 CISPEP 1 TYR A 188 PRO A 189 0 -0.08 CISPEP 2 CYS A 352 PRO A 353 0 -0.43 SITE 1 AC1 16 ASP A 8 ASP A 9 ASP A 11 TPO A 18 SITE 2 AC1 16 LEU A 45 ILE A 49 ASN A 56 GLY A 57 SITE 3 AC1 16 ALA A 112 ASP A 115 LEU A 117 ARG A 140 SITE 4 AC1 16 GLY A 141 ILE A 143 GLY A 144 C B 34 SITE 1 AC2 9 ASP A 193 ASN A 194 VAL A 203 GLY A 215 SITE 2 AC2 9 ARG A 217 PRO A 398 ARG A 401 U B 33 SITE 3 AC2 9 A B 35 CRYST1 130.789 130.789 87.087 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007646 0.004414 0.000000 0.00000 SCALE2 0.000000 0.008829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011483 0.00000