data_3APS # _entry.id 3APS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3APS RCSB RCSB029543 WWPDB D_1000029543 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3APO 'crystal structure of full-length ERdj5' unspecified PDB 3APQ 'crystal structure of J-Trx1 fragment of ERdj5' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3APS _pdbx_database_status.recvd_initial_deposition_date 2010-10-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Inaba, K.' 1 'Suzuki, M.' 2 'Nagata, K.' 3 # _citation.id primary _citation.title 'Structural basis of an ERAD pathway mediated by the ER-resident protein disulfide reductase ERdj5.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 41 _citation.page_first 432 _citation.page_last 444 _citation.year 2011 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21329881 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2011.01.021 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hagiwara, M.' 1 primary 'Maegawa, K.' 2 primary 'Suzuki, M.' 3 primary 'Ushioda, R.' 4 primary 'Araki, K.' 5 primary 'Matsumoto, Y.' 6 primary 'Hoseki, J.' 7 primary 'Nagata, K.' 8 primary 'Inaba, K.' 9 # _cell.entry_id 3APS _cell.length_a 56.060 _cell.length_b 33.419 _cell.length_c 68.343 _cell.angle_alpha 90.00 _cell.angle_beta 92.85 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3APS _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DnaJ homolog subfamily C member 10' 13943.077 2 ? ? 'TRX4 DOMAIN (UNP RESIDUES 668-789)' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 78 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ER-RESIDENT PROTEIN ERDJ5, ENDOPLASMIC RETICULUM DNAJ-PDI FUSION PROTEIN 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVK LYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKRN ; _entity_poly.pdbx_seq_one_letter_code_can ;LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVK LYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKRN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 PRO n 1 3 GLN n 1 4 ALA n 1 5 SER n 1 6 ILE n 1 7 ASP n 1 8 LEU n 1 9 THR n 1 10 PRO n 1 11 GLN n 1 12 THR n 1 13 PHE n 1 14 ASN n 1 15 GLU n 1 16 LYS n 1 17 VAL n 1 18 LEU n 1 19 GLN n 1 20 GLY n 1 21 LYS n 1 22 THR n 1 23 HIS n 1 24 TRP n 1 25 VAL n 1 26 VAL n 1 27 ASP n 1 28 PHE n 1 29 TYR n 1 30 ALA n 1 31 PRO n 1 32 TRP n 1 33 CYS n 1 34 GLY n 1 35 PRO n 1 36 CYS n 1 37 GLN n 1 38 ASN n 1 39 PHE n 1 40 ALA n 1 41 PRO n 1 42 GLU n 1 43 PHE n 1 44 GLU n 1 45 LEU n 1 46 LEU n 1 47 ALA n 1 48 ARG n 1 49 MET n 1 50 ILE n 1 51 LYS n 1 52 GLY n 1 53 LYS n 1 54 VAL n 1 55 ARG n 1 56 ALA n 1 57 GLY n 1 58 LYS n 1 59 VAL n 1 60 ASP n 1 61 CYS n 1 62 GLN n 1 63 ALA n 1 64 TYR n 1 65 PRO n 1 66 GLN n 1 67 THR n 1 68 CYS n 1 69 GLN n 1 70 LYS n 1 71 ALA n 1 72 GLY n 1 73 ILE n 1 74 LYS n 1 75 ALA n 1 76 TYR n 1 77 PRO n 1 78 SER n 1 79 VAL n 1 80 LYS n 1 81 LEU n 1 82 TYR n 1 83 GLN n 1 84 TYR n 1 85 GLU n 1 86 ARG n 1 87 ALA n 1 88 LYS n 1 89 LYS n 1 90 SER n 1 91 ILE n 1 92 TRP n 1 93 GLU n 1 94 GLU n 1 95 GLN n 1 96 ILE n 1 97 ASN n 1 98 SER n 1 99 ARG n 1 100 ASP n 1 101 ALA n 1 102 LYS n 1 103 THR n 1 104 ILE n 1 105 ALA n 1 106 ALA n 1 107 LEU n 1 108 ILE n 1 109 TYR n 1 110 GLY n 1 111 LYS n 1 112 LEU n 1 113 GLU n 1 114 THR n 1 115 LEU n 1 116 GLN n 1 117 SER n 1 118 GLN n 1 119 VAL n 1 120 LYS n 1 121 ARG n 1 122 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name MOUSE _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DNAJC10, ERDJ5, JPDI' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ORIGAMI _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PCOLD-TF _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DJC10_MOUSE _struct_ref.pdbx_db_accession Q9DC23 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVK LYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKRN ; _struct_ref.pdbx_align_begin 668 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3APS A 1 ? 122 ? Q9DC23 668 ? 789 ? 668 789 2 1 3APS B 1 ? 122 ? Q9DC23 668 ? 789 ? 668 789 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3APS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 46.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '17.5 % PEG 3350, 140MM LISO4, 70MM HEPES PH7.5, 70MM GLYCINE, 12% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'Bruker DIP-6040' _diffrn_detector.pdbx_collection_date 2007-10-08 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.90 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_wavelength 0.90 _diffrn_source.pdbx_wavelength_list 0.90 # _reflns.entry_id 3APS _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 34.120 _reflns.d_resolution_high 1.900 _reflns.number_obs 20060 _reflns.number_all ? _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.04900 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.4000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.700 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 94.7 _reflns_shell.Rmerge_I_obs 0.36400 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.700 _reflns_shell.pdbx_redundancy 3.20 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3APS _refine.ls_number_reflns_obs 19032 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.02 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 98.5 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.242 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1021 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 39.194 _refine.aniso_B[1][1] 1.35000 _refine.aniso_B[2][2] -1.02000 _refine.aniso_B[3][3] -0.24000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.85000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.149 _refine.overall_SU_ML 0.114 _refine.overall_SU_B 7.754 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1826 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 1915 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 30.02 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 1885 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.562 1.957 ? 2551 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.159 5.000 ? 226 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41.508 24.634 ? 82 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.564 15.000 ? 332 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.699 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.110 0.200 ? 270 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 1400 'X-RAY DIFFRACTION' ? r_mcbond_it 0.916 1.500 ? 1140 'X-RAY DIFFRACTION' ? r_mcangle_it 1.676 2.000 ? 1836 'X-RAY DIFFRACTION' ? r_scbond_it 2.672 3.000 ? 745 'X-RAY DIFFRACTION' ? r_scangle_it 4.445 4.500 ? 715 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.95 _refine_ls_shell.number_reflns_R_work 1330 _refine_ls_shell.R_factor_R_work 0.2810 _refine_ls_shell.percent_reflns_obs 92.90 _refine_ls_shell.R_factor_R_free 0.3260 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 70 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3APS _struct.title 'Crystal structure of Trx4 domain of ERdj5' _struct.pdbx_descriptor 'DnaJ homolog subfamily C member 10' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3APS _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'THIOREDOXIN FOLD, CXXC MOTIF, ENDOPLASMIC RETICULUM, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 9 ? VAL A 17 ? THR A 676 VAL A 684 1 ? 9 HELX_P HELX_P2 2 CYS A 33 ? LYS A 51 ? CYS A 700 LYS A 718 1 ? 19 HELX_P HELX_P3 3 TYR A 64 ? ALA A 71 ? TYR A 731 ALA A 738 1 ? 8 HELX_P HELX_P4 4 ARG A 86 ? LYS A 89 ? ARG A 753 LYS A 756 5 ? 4 HELX_P HELX_P5 5 ASP A 100 ? THR A 114 ? ASP A 767 THR A 781 1 ? 15 HELX_P HELX_P6 6 THR B 9 ? VAL B 17 ? THR B 676 VAL B 684 1 ? 9 HELX_P HELX_P7 7 CYS B 33 ? LYS B 51 ? CYS B 700 LYS B 718 1 ? 19 HELX_P HELX_P8 8 TYR B 64 ? ALA B 71 ? TYR B 731 ALA B 738 1 ? 8 HELX_P HELX_P9 9 ASP B 100 ? THR B 114 ? ASP B 767 THR B 781 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 33 SG ? ? ? 1_555 A CYS 36 SG ? ? A CYS 700 A CYS 703 1_555 ? ? ? ? ? ? ? 2.160 ? disulf2 disulf ? ? A CYS 61 SG ? ? ? 1_555 A CYS 68 SG ? ? A CYS 728 A CYS 735 1_555 ? ? ? ? ? ? ? 2.038 ? disulf3 disulf ? ? B CYS 33 SG ? ? ? 1_555 B CYS 36 SG ? ? B CYS 700 B CYS 703 1_555 ? ? ? ? ? ? ? 2.107 ? disulf4 disulf ? ? B CYS 61 SG ? ? ? 1_555 B CYS 68 SG ? ? B CYS 728 B CYS 735 1_555 ? ? ? ? ? ? ? 2.021 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 76 A . ? TYR 743 A PRO 77 A ? PRO 744 A 1 -6.76 2 TYR 76 B . ? TYR 743 B PRO 77 B ? PRO 744 B 1 0.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 6 ? ASP A 7 ? ILE A 673 ASP A 674 A 2 ARG A 55 ? ASP A 60 ? ARG A 722 ASP A 727 A 3 TRP A 24 ? TYR A 29 ? TRP A 691 TYR A 696 A 4 SER A 78 ? GLU A 85 ? SER A 745 GLU A 752 A 5 SER A 90 ? ILE A 96 ? SER A 757 ILE A 763 B 1 ILE B 6 ? ASP B 7 ? ILE B 673 ASP B 674 B 2 ARG B 55 ? ASP B 60 ? ARG B 722 ASP B 727 B 3 TRP B 24 ? TYR B 29 ? TRP B 691 TYR B 696 B 4 SER B 78 ? GLU B 85 ? SER B 745 GLU B 752 B 5 SER B 90 ? ILE B 96 ? SER B 757 ILE B 763 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 6 ? N ILE A 673 O ALA A 56 ? O ALA A 723 A 2 3 O GLY A 57 ? O GLY A 724 N VAL A 25 ? N VAL A 692 A 3 4 N PHE A 28 ? N PHE A 695 O SER A 78 ? O SER A 745 A 4 5 N GLU A 85 ? N GLU A 752 O SER A 90 ? O SER A 757 B 1 2 N ILE B 6 ? N ILE B 673 O ALA B 56 ? O ALA B 723 B 2 3 O GLY B 57 ? O GLY B 724 N VAL B 25 ? N VAL B 692 B 3 4 N PHE B 28 ? N PHE B 695 O SER B 78 ? O SER B 745 B 4 5 N LEU B 81 ? N LEU B 748 O GLU B 94 ? O GLU B 761 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL A 790' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 PRO A 10 ? PRO A 677 . ? 1_555 ? 2 AC1 5 TYR A 64 ? TYR A 731 . ? 1_555 ? 3 AC1 5 PRO A 65 ? PRO A 732 . ? 1_555 ? 4 AC1 5 GLN A 66 ? GLN A 733 . ? 1_555 ? 5 AC1 5 THR A 67 ? THR A 734 . ? 1_555 ? 6 AC2 2 ALA A 75 ? ALA A 742 . ? 1_555 ? 7 AC2 2 TYR A 76 ? TYR A 743 . ? 1_555 ? # _database_PDB_matrix.entry_id 3APS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3APS _atom_sites.fract_transf_matrix[1][1] 0.017838 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000887 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029923 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014650 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 668 ? ? ? A . n A 1 2 PRO 2 669 669 PRO PRO A . n A 1 3 GLN 3 670 670 GLN GLN A . n A 1 4 ALA 4 671 671 ALA ALA A . n A 1 5 SER 5 672 672 SER SER A . n A 1 6 ILE 6 673 673 ILE ILE A . n A 1 7 ASP 7 674 674 ASP ASP A . n A 1 8 LEU 8 675 675 LEU LEU A . n A 1 9 THR 9 676 676 THR THR A . n A 1 10 PRO 10 677 677 PRO PRO A . n A 1 11 GLN 11 678 678 GLN GLN A . n A 1 12 THR 12 679 679 THR THR A . n A 1 13 PHE 13 680 680 PHE PHE A . n A 1 14 ASN 14 681 681 ASN ASN A . n A 1 15 GLU 15 682 682 GLU GLU A . n A 1 16 LYS 16 683 683 LYS LYS A . n A 1 17 VAL 17 684 684 VAL VAL A . n A 1 18 LEU 18 685 685 LEU LEU A . n A 1 19 GLN 19 686 686 GLN GLN A . n A 1 20 GLY 20 687 687 GLY GLY A . n A 1 21 LYS 21 688 688 LYS LYS A . n A 1 22 THR 22 689 689 THR THR A . n A 1 23 HIS 23 690 690 HIS HIS A . n A 1 24 TRP 24 691 691 TRP TRP A . n A 1 25 VAL 25 692 692 VAL VAL A . n A 1 26 VAL 26 693 693 VAL VAL A . n A 1 27 ASP 27 694 694 ASP ASP A . n A 1 28 PHE 28 695 695 PHE PHE A . n A 1 29 TYR 29 696 696 TYR TYR A . n A 1 30 ALA 30 697 697 ALA ALA A . n A 1 31 PRO 31 698 698 PRO PRO A . n A 1 32 TRP 32 699 699 TRP TRP A . n A 1 33 CYS 33 700 700 CYS CYS A . n A 1 34 GLY 34 701 701 GLY GLY A . n A 1 35 PRO 35 702 702 PRO PRO A . n A 1 36 CYS 36 703 703 CYS CYS A . n A 1 37 GLN 37 704 704 GLN GLN A . n A 1 38 ASN 38 705 705 ASN ASN A . n A 1 39 PHE 39 706 706 PHE PHE A . n A 1 40 ALA 40 707 707 ALA ALA A . n A 1 41 PRO 41 708 708 PRO PRO A . n A 1 42 GLU 42 709 709 GLU GLU A . n A 1 43 PHE 43 710 710 PHE PHE A . n A 1 44 GLU 44 711 711 GLU GLU A . n A 1 45 LEU 45 712 712 LEU LEU A . n A 1 46 LEU 46 713 713 LEU LEU A . n A 1 47 ALA 47 714 714 ALA ALA A . n A 1 48 ARG 48 715 715 ARG ARG A . n A 1 49 MET 49 716 716 MET MET A . n A 1 50 ILE 50 717 717 ILE ILE A . n A 1 51 LYS 51 718 718 LYS LYS A . n A 1 52 GLY 52 719 719 GLY GLY A . n A 1 53 LYS 53 720 720 LYS LYS A . n A 1 54 VAL 54 721 721 VAL VAL A . n A 1 55 ARG 55 722 722 ARG ARG A . n A 1 56 ALA 56 723 723 ALA ALA A . n A 1 57 GLY 57 724 724 GLY GLY A . n A 1 58 LYS 58 725 725 LYS LYS A . n A 1 59 VAL 59 726 726 VAL VAL A . n A 1 60 ASP 60 727 727 ASP ASP A . n A 1 61 CYS 61 728 728 CYS CYS A . n A 1 62 GLN 62 729 729 GLN GLN A . n A 1 63 ALA 63 730 730 ALA ALA A . n A 1 64 TYR 64 731 731 TYR TYR A . n A 1 65 PRO 65 732 732 PRO PRO A . n A 1 66 GLN 66 733 733 GLN GLN A . n A 1 67 THR 67 734 734 THR THR A . n A 1 68 CYS 68 735 735 CYS CYS A . n A 1 69 GLN 69 736 736 GLN GLN A . n A 1 70 LYS 70 737 737 LYS LYS A . n A 1 71 ALA 71 738 738 ALA ALA A . n A 1 72 GLY 72 739 739 GLY GLY A . n A 1 73 ILE 73 740 740 ILE ILE A . n A 1 74 LYS 74 741 741 LYS LYS A . n A 1 75 ALA 75 742 742 ALA ALA A . n A 1 76 TYR 76 743 743 TYR TYR A . n A 1 77 PRO 77 744 744 PRO PRO A . n A 1 78 SER 78 745 745 SER SER A . n A 1 79 VAL 79 746 746 VAL VAL A . n A 1 80 LYS 80 747 747 LYS LYS A . n A 1 81 LEU 81 748 748 LEU LEU A . n A 1 82 TYR 82 749 749 TYR TYR A . n A 1 83 GLN 83 750 750 GLN GLN A . n A 1 84 TYR 84 751 751 TYR TYR A . n A 1 85 GLU 85 752 752 GLU GLU A . n A 1 86 ARG 86 753 753 ARG ARG A . n A 1 87 ALA 87 754 754 ALA ALA A . n A 1 88 LYS 88 755 755 LYS LYS A . n A 1 89 LYS 89 756 756 LYS LYS A . n A 1 90 SER 90 757 757 SER SER A . n A 1 91 ILE 91 758 758 ILE ILE A . n A 1 92 TRP 92 759 759 TRP TRP A . n A 1 93 GLU 93 760 760 GLU GLU A . n A 1 94 GLU 94 761 761 GLU GLU A . n A 1 95 GLN 95 762 762 GLN GLN A . n A 1 96 ILE 96 763 763 ILE ILE A . n A 1 97 ASN 97 764 764 ASN ASN A . n A 1 98 SER 98 765 765 SER SER A . n A 1 99 ARG 99 766 766 ARG ARG A . n A 1 100 ASP 100 767 767 ASP ASP A . n A 1 101 ALA 101 768 768 ALA ALA A . n A 1 102 LYS 102 769 769 LYS LYS A . n A 1 103 THR 103 770 770 THR THR A . n A 1 104 ILE 104 771 771 ILE ILE A . n A 1 105 ALA 105 772 772 ALA ALA A . n A 1 106 ALA 106 773 773 ALA ALA A . n A 1 107 LEU 107 774 774 LEU LEU A . n A 1 108 ILE 108 775 775 ILE ILE A . n A 1 109 TYR 109 776 776 TYR TYR A . n A 1 110 GLY 110 777 777 GLY GLY A . n A 1 111 LYS 111 778 778 LYS LYS A . n A 1 112 LEU 112 779 779 LEU LEU A . n A 1 113 GLU 113 780 780 GLU GLU A . n A 1 114 THR 114 781 781 THR THR A . n A 1 115 LEU 115 782 782 LEU LEU A . n A 1 116 GLN 116 783 ? ? ? A . n A 1 117 SER 117 784 ? ? ? A . n A 1 118 GLN 118 785 ? ? ? A . n A 1 119 VAL 119 786 ? ? ? A . n A 1 120 LYS 120 787 ? ? ? A . n A 1 121 ARG 121 788 ? ? ? A . n A 1 122 ASN 122 789 ? ? ? A . n B 1 1 LEU 1 668 ? ? ? B . n B 1 2 PRO 2 669 669 PRO PRO B . n B 1 3 GLN 3 670 670 GLN GLN B . n B 1 4 ALA 4 671 671 ALA ALA B . n B 1 5 SER 5 672 672 SER SER B . n B 1 6 ILE 6 673 673 ILE ILE B . n B 1 7 ASP 7 674 674 ASP ASP B . n B 1 8 LEU 8 675 675 LEU LEU B . n B 1 9 THR 9 676 676 THR THR B . n B 1 10 PRO 10 677 677 PRO PRO B . n B 1 11 GLN 11 678 678 GLN GLN B . n B 1 12 THR 12 679 679 THR THR B . n B 1 13 PHE 13 680 680 PHE PHE B . n B 1 14 ASN 14 681 681 ASN ASN B . n B 1 15 GLU 15 682 682 GLU GLU B . n B 1 16 LYS 16 683 683 LYS LYS B . n B 1 17 VAL 17 684 684 VAL VAL B . n B 1 18 LEU 18 685 685 LEU LEU B . n B 1 19 GLN 19 686 686 GLN GLN B . n B 1 20 GLY 20 687 687 GLY GLY B . n B 1 21 LYS 21 688 688 LYS LYS B . n B 1 22 THR 22 689 689 THR THR B . n B 1 23 HIS 23 690 690 HIS HIS B . n B 1 24 TRP 24 691 691 TRP TRP B . n B 1 25 VAL 25 692 692 VAL VAL B . n B 1 26 VAL 26 693 693 VAL VAL B . n B 1 27 ASP 27 694 694 ASP ASP B . n B 1 28 PHE 28 695 695 PHE PHE B . n B 1 29 TYR 29 696 696 TYR TYR B . n B 1 30 ALA 30 697 697 ALA ALA B . n B 1 31 PRO 31 698 698 PRO PRO B . n B 1 32 TRP 32 699 699 TRP TRP B . n B 1 33 CYS 33 700 700 CYS CYS B . n B 1 34 GLY 34 701 701 GLY GLY B . n B 1 35 PRO 35 702 702 PRO PRO B . n B 1 36 CYS 36 703 703 CYS CYS B . n B 1 37 GLN 37 704 704 GLN GLN B . n B 1 38 ASN 38 705 705 ASN ASN B . n B 1 39 PHE 39 706 706 PHE PHE B . n B 1 40 ALA 40 707 707 ALA ALA B . n B 1 41 PRO 41 708 708 PRO PRO B . n B 1 42 GLU 42 709 709 GLU GLU B . n B 1 43 PHE 43 710 710 PHE PHE B . n B 1 44 GLU 44 711 711 GLU GLU B . n B 1 45 LEU 45 712 712 LEU LEU B . n B 1 46 LEU 46 713 713 LEU LEU B . n B 1 47 ALA 47 714 714 ALA ALA B . n B 1 48 ARG 48 715 715 ARG ARG B . n B 1 49 MET 49 716 716 MET MET B . n B 1 50 ILE 50 717 717 ILE ILE B . n B 1 51 LYS 51 718 718 LYS LYS B . n B 1 52 GLY 52 719 719 GLY GLY B . n B 1 53 LYS 53 720 720 LYS LYS B . n B 1 54 VAL 54 721 721 VAL VAL B . n B 1 55 ARG 55 722 722 ARG ARG B . n B 1 56 ALA 56 723 723 ALA ALA B . n B 1 57 GLY 57 724 724 GLY GLY B . n B 1 58 LYS 58 725 725 LYS LYS B . n B 1 59 VAL 59 726 726 VAL VAL B . n B 1 60 ASP 60 727 727 ASP ASP B . n B 1 61 CYS 61 728 728 CYS CYS B . n B 1 62 GLN 62 729 729 GLN GLN B . n B 1 63 ALA 63 730 730 ALA ALA B . n B 1 64 TYR 64 731 731 TYR TYR B . n B 1 65 PRO 65 732 732 PRO PRO B . n B 1 66 GLN 66 733 733 GLN GLN B . n B 1 67 THR 67 734 734 THR THR B . n B 1 68 CYS 68 735 735 CYS CYS B . n B 1 69 GLN 69 736 736 GLN GLN B . n B 1 70 LYS 70 737 737 LYS LYS B . n B 1 71 ALA 71 738 738 ALA ALA B . n B 1 72 GLY 72 739 739 GLY GLY B . n B 1 73 ILE 73 740 740 ILE ILE B . n B 1 74 LYS 74 741 741 LYS LYS B . n B 1 75 ALA 75 742 742 ALA ALA B . n B 1 76 TYR 76 743 743 TYR TYR B . n B 1 77 PRO 77 744 744 PRO PRO B . n B 1 78 SER 78 745 745 SER SER B . n B 1 79 VAL 79 746 746 VAL VAL B . n B 1 80 LYS 80 747 747 LYS LYS B . n B 1 81 LEU 81 748 748 LEU LEU B . n B 1 82 TYR 82 749 749 TYR TYR B . n B 1 83 GLN 83 750 750 GLN GLN B . n B 1 84 TYR 84 751 751 TYR TYR B . n B 1 85 GLU 85 752 752 GLU GLU B . n B 1 86 ARG 86 753 753 ARG ARG B . n B 1 87 ALA 87 754 754 ALA ALA B . n B 1 88 LYS 88 755 755 LYS LYS B . n B 1 89 LYS 89 756 756 LYS LYS B . n B 1 90 SER 90 757 757 SER SER B . n B 1 91 ILE 91 758 758 ILE ILE B . n B 1 92 TRP 92 759 759 TRP TRP B . n B 1 93 GLU 93 760 760 GLU GLU B . n B 1 94 GLU 94 761 761 GLU GLU B . n B 1 95 GLN 95 762 762 GLN GLN B . n B 1 96 ILE 96 763 763 ILE ILE B . n B 1 97 ASN 97 764 764 ASN ASN B . n B 1 98 SER 98 765 765 SER SER B . n B 1 99 ARG 99 766 766 ARG ARG B . n B 1 100 ASP 100 767 767 ASP ASP B . n B 1 101 ALA 101 768 768 ALA ALA B . n B 1 102 LYS 102 769 769 LYS LYS B . n B 1 103 THR 103 770 770 THR THR B . n B 1 104 ILE 104 771 771 ILE ILE B . n B 1 105 ALA 105 772 772 ALA ALA B . n B 1 106 ALA 106 773 773 ALA ALA B . n B 1 107 LEU 107 774 774 LEU LEU B . n B 1 108 ILE 108 775 775 ILE ILE B . n B 1 109 TYR 109 776 776 TYR TYR B . n B 1 110 GLY 110 777 777 GLY GLY B . n B 1 111 LYS 111 778 778 LYS LYS B . n B 1 112 LEU 112 779 779 LEU LEU B . n B 1 113 GLU 113 780 780 GLU GLU B . n B 1 114 THR 114 781 781 THR THR B . n B 1 115 LEU 115 782 782 LEU LEU B . n B 1 116 GLN 116 783 ? ? ? B . n B 1 117 SER 117 784 ? ? ? B . n B 1 118 GLN 118 785 ? ? ? B . n B 1 119 VAL 119 786 ? ? ? B . n B 1 120 LYS 120 787 ? ? ? B . n B 1 121 ARG 121 788 ? ? ? B . n B 1 122 ASN 122 789 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 1 1 SO4 SO4 A . D 3 GOL 1 790 790 GOL GOL A . E 4 HOH 1 2 2 HOH HOH A . E 4 HOH 2 3 3 HOH HOH A . E 4 HOH 3 4 4 HOH HOH A . E 4 HOH 4 5 5 HOH HOH A . E 4 HOH 5 6 6 HOH HOH A . E 4 HOH 6 8 8 HOH HOH A . E 4 HOH 7 11 11 HOH HOH A . E 4 HOH 8 12 12 HOH HOH A . E 4 HOH 9 13 13 HOH HOH A . E 4 HOH 10 14 14 HOH HOH A . E 4 HOH 11 15 15 HOH HOH A . E 4 HOH 12 16 16 HOH HOH A . E 4 HOH 13 18 18 HOH HOH A . E 4 HOH 14 19 19 HOH HOH A . E 4 HOH 15 23 23 HOH HOH A . E 4 HOH 16 24 24 HOH HOH A . E 4 HOH 17 27 27 HOH HOH A . E 4 HOH 18 29 29 HOH HOH A . E 4 HOH 19 31 31 HOH HOH A . E 4 HOH 20 32 32 HOH HOH A . E 4 HOH 21 33 33 HOH HOH A . E 4 HOH 22 35 35 HOH HOH A . E 4 HOH 23 36 36 HOH HOH A . E 4 HOH 24 37 37 HOH HOH A . E 4 HOH 25 38 38 HOH HOH A . E 4 HOH 26 39 39 HOH HOH A . E 4 HOH 27 40 40 HOH HOH A . E 4 HOH 28 41 41 HOH HOH A . E 4 HOH 29 44 44 HOH HOH A . E 4 HOH 30 45 45 HOH HOH A . E 4 HOH 31 46 46 HOH HOH A . E 4 HOH 32 47 47 HOH HOH A . E 4 HOH 33 49 49 HOH HOH A . E 4 HOH 34 50 50 HOH HOH A . E 4 HOH 35 51 51 HOH HOH A . E 4 HOH 36 52 52 HOH HOH A . E 4 HOH 37 53 53 HOH HOH A . E 4 HOH 38 54 54 HOH HOH A . E 4 HOH 39 56 56 HOH HOH A . E 4 HOH 40 57 57 HOH HOH A . E 4 HOH 41 59 59 HOH HOH A . E 4 HOH 42 64 64 HOH HOH A . E 4 HOH 43 65 65 HOH HOH A . E 4 HOH 44 66 66 HOH HOH A . E 4 HOH 45 71 71 HOH HOH A . E 4 HOH 46 72 72 HOH HOH A . E 4 HOH 47 73 73 HOH HOH A . E 4 HOH 48 74 74 HOH HOH A . E 4 HOH 49 75 75 HOH HOH A . E 4 HOH 50 78 78 HOH HOH A . E 4 HOH 51 79 79 HOH HOH A . E 4 HOH 52 80 80 HOH HOH A . E 4 HOH 53 83 83 HOH HOH A . E 4 HOH 54 84 84 HOH HOH A . F 4 HOH 1 1 1 HOH HOH B . F 4 HOH 2 7 7 HOH HOH B . F 4 HOH 3 9 9 HOH HOH B . F 4 HOH 4 10 10 HOH HOH B . F 4 HOH 5 17 17 HOH HOH B . F 4 HOH 6 21 21 HOH HOH B . F 4 HOH 7 22 22 HOH HOH B . F 4 HOH 8 26 26 HOH HOH B . F 4 HOH 9 28 28 HOH HOH B . F 4 HOH 10 30 30 HOH HOH B . F 4 HOH 11 34 34 HOH HOH B . F 4 HOH 12 42 42 HOH HOH B . F 4 HOH 13 43 43 HOH HOH B . F 4 HOH 14 48 48 HOH HOH B . F 4 HOH 15 60 60 HOH HOH B . F 4 HOH 16 67 67 HOH HOH B . F 4 HOH 17 68 68 HOH HOH B . F 4 HOH 18 69 69 HOH HOH B . F 4 HOH 19 70 70 HOH HOH B . F 4 HOH 20 76 76 HOH HOH B . F 4 HOH 21 77 77 HOH HOH B . F 4 HOH 22 81 81 HOH HOH B . F 4 HOH 23 82 82 HOH HOH B . F 4 HOH 24 85 85 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E 2 1 B,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-20 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -0.2340 1.7610 24.3850 0.0930 0.0445 0.0227 0.0061 0.0212 0.0026 2.1884 3.2475 2.4243 0.2504 0.4806 0.0100 -0.0098 0.1999 0.1048 -0.2749 0.0314 -0.0008 0.1203 0.0856 -0.0216 'X-RAY DIFFRACTION' 2 ? refined -17.9340 0.3130 0.8430 0.1021 0.1668 0.2331 0.0458 -0.0007 -0.1580 3.3618 8.0958 5.5229 1.8611 1.4770 2.2010 -0.1066 0.3752 -0.3830 0.2175 0.6622 -1.1194 0.3668 0.7040 -0.5556 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 669 ? ? A 782 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 669 ? ? B 780 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SHELX 'model building' C/D/E ? 2 REFMAC refinement 5.5.0085 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 SHELX phasing C/D/E ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 LEU _pdbx_validate_close_contact.auth_seq_id_1 675 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 81 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.05 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ALA _pdbx_validate_rmsd_angle.auth_seq_id_1 697 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 698 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 698 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 128.50 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 9.20 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 684 ? ? -98.91 -64.09 2 1 VAL B 684 ? ? -90.92 -66.61 3 1 THR B 781 ? ? -64.38 97.61 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 668 ? A LEU 1 2 1 Y 1 A GLN 783 ? A GLN 116 3 1 Y 1 A SER 784 ? A SER 117 4 1 Y 1 A GLN 785 ? A GLN 118 5 1 Y 1 A VAL 786 ? A VAL 119 6 1 Y 1 A LYS 787 ? A LYS 120 7 1 Y 1 A ARG 788 ? A ARG 121 8 1 Y 1 A ASN 789 ? A ASN 122 9 1 Y 1 B LEU 668 ? B LEU 1 10 1 Y 1 B GLN 783 ? B GLN 116 11 1 Y 1 B SER 784 ? B SER 117 12 1 Y 1 B GLN 785 ? B GLN 118 13 1 Y 1 B VAL 786 ? B VAL 119 14 1 Y 1 B LYS 787 ? B LYS 120 15 1 Y 1 B ARG 788 ? B ARG 121 16 1 Y 1 B ASN 789 ? B ASN 122 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH #