HEADER OXIDOREDUCTASE 20-OCT-10 3APT TITLE PROPERTIES AND CRYSTAL STRUCTURE OF METHYLENETETRAHYDROFOLATE TITLE 2 REDUCTASE FROM THERMUS THERMOPHILUS HB8 CAVEAT 3APT CHIRALITY ERROR AT CB CENTER OF ILE A 208 AND ILE B 67. COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLENETETRAHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TTHA0327; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23, PET(TMRWT) KEYWDS TIM BARREL, OXIDOREDUCTASE, FLAVIN EXPDTA X-RAY DIFFRACTION AUTHOR K.YAMADA REVDAT 2 01-NOV-23 3APT 1 REMARK SEQADV REVDAT 1 14-SEP-11 3APT 0 JRNL AUTH S.IGARI,A.OHTAKI,Y.YAMANAKA,Y.SATO,M.YOHDA,M.ODAKA, JRNL AUTH 2 K.NOGUCHI,K.YAMADA JRNL TITL PROPERTIES AND CRYSTAL STRUCTURE OF JRNL TITL 2 METHYLENETETRAHYDROFOLATE REDUCTASE FROM THERMUS JRNL TITL 3 THERMOPHILUS HB8. JRNL REF PLOS ONE V. 6 23716 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21858212 JRNL DOI 10.1371/JOURNAL.PONE.0023716 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 52173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2796 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3756 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4482 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 423 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.210 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4646 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6285 ; 2.136 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 563 ; 6.673 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 221 ;34.287 ;21.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 768 ;18.667 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;22.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 673 ; 0.215 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3581 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2823 ; 1.405 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4514 ; 2.445 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1823 ; 3.487 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1771 ; 5.526 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3APT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000029544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55102 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 19.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.28600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 10.2.31 REMARK 200 STARTING MODEL: PDB ENTRY 1V93 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.3-4.5, 293K, 0.2M SODIUM ACETATE, REMARK 280 1M LITHIUM CHROLIDE, 10% PEG 6000, 10-20% GLYCEROL, 2-5% DIOXANE, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.96200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.36000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.83650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.36000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.96200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.83650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 293 REMARK 465 GLY A 294 REMARK 465 GLN A 295 REMARK 465 PRO A 296 REMARK 465 ALA A 297 REMARK 465 LYS A 298 REMARK 465 LEU A 299 REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 ALA A 302 REMARK 465 LEU A 303 REMARK 465 GLU A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 GLY B 51 REMARK 465 ALA B 52 REMARK 465 MET B 53 REMARK 465 GLY B 54 REMARK 465 SER B 55 REMARK 465 GLU B 114 REMARK 465 ARG B 115 REMARK 465 VAL B 116 REMARK 465 PHE B 117 REMARK 465 ARG B 118 REMARK 465 PRO B 119 REMARK 465 HIS B 120 REMARK 465 PRO B 121 REMARK 465 GLU B 122 REMARK 465 ARG B 290 REMARK 465 PRO B 291 REMARK 465 ALA B 292 REMARK 465 SER B 293 REMARK 465 GLY B 294 REMARK 465 GLN B 295 REMARK 465 PRO B 296 REMARK 465 ALA B 297 REMARK 465 LYS B 298 REMARK 465 LEU B 299 REMARK 465 ALA B 300 REMARK 465 ALA B 301 REMARK 465 ALA B 302 REMARK 465 LEU B 303 REMARK 465 GLU B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 157 O HOH B 576 1.91 REMARK 500 OE2 GLU B 157 OD1 ASP B 162 2.02 REMARK 500 O LYS A 244 O HOH A 568 2.11 REMARK 500 NH1 ARG B 256 O HOH B 579 2.12 REMARK 500 OE1 GLU B 160 NE ARG B 164 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 194 CD ARG A 194 NE -0.107 REMARK 500 GLU A 267 CG GLU A 267 CD 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 96 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 194 CG - CD - NE ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG A 194 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG A 196 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 196 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 197 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 197 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 33 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ILE B 48 CG1 - CB - CG2 ANGL. DEV. = 14.1 DEGREES REMARK 500 THR B 79 CB - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 11 33.23 -96.75 REMARK 500 MET A 53 74.66 55.86 REMARK 500 SER A 55 -121.56 -170.05 REMARK 500 ARG B 107 -83.56 -102.46 REMARK 500 GLU B 157 -43.34 -144.71 REMARK 500 SER B 158 139.80 127.95 REMARK 500 GLN B 240 -31.96 -36.17 REMARK 500 ASP B 242 71.98 133.49 REMARK 500 LYS B 276 -70.00 120.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 51 ALA A 52 134.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3APY RELATED DB: PDB DBREF 3APT A 1 296 UNP Q5SLG6 Q5SLG6_THET8 1 296 DBREF 3APT B 1 296 UNP Q5SLG6 Q5SLG6_THET8 1 296 SEQADV 3APT ALA A 297 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT LYS A 298 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT LEU A 299 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT ALA A 300 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT ALA A 301 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT ALA A 302 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT LEU A 303 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT GLU A 304 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS A 305 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS A 306 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS A 307 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS A 308 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS A 309 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS A 310 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT ALA B 297 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT LYS B 298 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT LEU B 299 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT ALA B 300 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT ALA B 301 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT ALA B 302 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT LEU B 303 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT GLU B 304 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS B 305 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS B 306 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS B 307 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS B 308 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS B 309 UNP Q5SLG6 EXPRESSION TAG SEQADV 3APT HIS B 310 UNP Q5SLG6 EXPRESSION TAG SEQRES 1 A 310 MET LYS ILE ARG ASP LEU LEU LYS ALA ARG ARG GLY PRO SEQRES 2 A 310 LEU PHE SER PHE GLU PHE PHE PRO PRO LYS ASP PRO GLU SEQRES 3 A 310 GLY GLU GLU ALA LEU PHE ARG THR LEU GLU GLU LEU LYS SEQRES 4 A 310 ALA PHE ARG PRO ALA PHE VAL SER ILE THR TYR GLY ALA SEQRES 5 A 310 MET GLY SER THR ARG GLU ARG SER VAL ALA TRP ALA GLN SEQRES 6 A 310 ARG ILE GLN SER LEU GLY LEU ASN PRO LEU ALA HIS LEU SEQRES 7 A 310 THR VAL ALA GLY GLN SER ARG LYS GLU VAL ALA GLU VAL SEQRES 8 A 310 LEU HIS ARG PHE VAL GLU SER GLY VAL GLU ASN LEU LEU SEQRES 9 A 310 ALA LEU ARG GLY ASP PRO PRO ARG GLY GLU ARG VAL PHE SEQRES 10 A 310 ARG PRO HIS PRO GLU GLY PHE ARG TYR ALA ALA GLU LEU SEQRES 11 A 310 VAL ALA LEU ILE ARG GLU ARG TYR GLY ASP ARG VAL SER SEQRES 12 A 310 VAL GLY GLY ALA ALA TYR PRO GLU GLY HIS PRO GLU SER SEQRES 13 A 310 GLU SER LEU GLU ALA ASP LEU ARG HIS PHE LYS ALA LYS SEQRES 14 A 310 VAL GLU ALA GLY LEU ASP PHE ALA ILE THR GLN LEU PHE SEQRES 15 A 310 PHE ASN ASN ALA HIS TYR PHE GLY PHE LEU GLU ARG ALA SEQRES 16 A 310 ARG ARG ALA GLY ILE GLY ILE PRO ILE LEU PRO GLY ILE SEQRES 17 A 310 MET PRO VAL THR SER TYR ARG GLN LEU ARG ARG PHE THR SEQRES 18 A 310 GLU VAL CYS GLY ALA SER ILE PRO GLY PRO LEU LEU ALA SEQRES 19 A 310 LYS LEU GLU ARG HIS GLN ASP ASP PRO LYS ALA VAL LEU SEQRES 20 A 310 GLU ILE GLY VAL GLU HIS ALA VAL ARG GLN VAL ALA GLU SEQRES 21 A 310 LEU LEU GLU ALA GLY VAL GLU GLY VAL HIS PHE TYR THR SEQRES 22 A 310 LEU ASN LYS SER PRO ALA THR ARG MET VAL LEU GLU ARG SEQRES 23 A 310 LEU GLY LEU ARG PRO ALA SER GLY GLN PRO ALA LYS LEU SEQRES 24 A 310 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 310 MET LYS ILE ARG ASP LEU LEU LYS ALA ARG ARG GLY PRO SEQRES 2 B 310 LEU PHE SER PHE GLU PHE PHE PRO PRO LYS ASP PRO GLU SEQRES 3 B 310 GLY GLU GLU ALA LEU PHE ARG THR LEU GLU GLU LEU LYS SEQRES 4 B 310 ALA PHE ARG PRO ALA PHE VAL SER ILE THR TYR GLY ALA SEQRES 5 B 310 MET GLY SER THR ARG GLU ARG SER VAL ALA TRP ALA GLN SEQRES 6 B 310 ARG ILE GLN SER LEU GLY LEU ASN PRO LEU ALA HIS LEU SEQRES 7 B 310 THR VAL ALA GLY GLN SER ARG LYS GLU VAL ALA GLU VAL SEQRES 8 B 310 LEU HIS ARG PHE VAL GLU SER GLY VAL GLU ASN LEU LEU SEQRES 9 B 310 ALA LEU ARG GLY ASP PRO PRO ARG GLY GLU ARG VAL PHE SEQRES 10 B 310 ARG PRO HIS PRO GLU GLY PHE ARG TYR ALA ALA GLU LEU SEQRES 11 B 310 VAL ALA LEU ILE ARG GLU ARG TYR GLY ASP ARG VAL SER SEQRES 12 B 310 VAL GLY GLY ALA ALA TYR PRO GLU GLY HIS PRO GLU SER SEQRES 13 B 310 GLU SER LEU GLU ALA ASP LEU ARG HIS PHE LYS ALA LYS SEQRES 14 B 310 VAL GLU ALA GLY LEU ASP PHE ALA ILE THR GLN LEU PHE SEQRES 15 B 310 PHE ASN ASN ALA HIS TYR PHE GLY PHE LEU GLU ARG ALA SEQRES 16 B 310 ARG ARG ALA GLY ILE GLY ILE PRO ILE LEU PRO GLY ILE SEQRES 17 B 310 MET PRO VAL THR SER TYR ARG GLN LEU ARG ARG PHE THR SEQRES 18 B 310 GLU VAL CYS GLY ALA SER ILE PRO GLY PRO LEU LEU ALA SEQRES 19 B 310 LYS LEU GLU ARG HIS GLN ASP ASP PRO LYS ALA VAL LEU SEQRES 20 B 310 GLU ILE GLY VAL GLU HIS ALA VAL ARG GLN VAL ALA GLU SEQRES 21 B 310 LEU LEU GLU ALA GLY VAL GLU GLY VAL HIS PHE TYR THR SEQRES 22 B 310 LEU ASN LYS SER PRO ALA THR ARG MET VAL LEU GLU ARG SEQRES 23 B 310 LEU GLY LEU ARG PRO ALA SER GLY GLN PRO ALA LYS LEU SEQRES 24 B 310 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET FAD A 311 53 HET ACT B 311 4 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM ACT ACETATE ION FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *423(H2 O) HELIX 1 1 LYS A 2 ALA A 9 1 8 HELIX 2 2 ASP A 24 LYS A 39 1 16 HELIX 3 3 ALA A 40 ARG A 42 5 3 HELIX 4 4 THR A 56 LEU A 70 1 15 HELIX 5 5 SER A 84 SER A 98 1 15 HELIX 6 6 TYR A 126 GLY A 139 1 14 HELIX 7 7 ASP A 140 VAL A 142 5 3 HELIX 8 8 SER A 158 LEU A 174 1 17 HELIX 9 9 ASN A 184 ALA A 198 1 15 HELIX 10 10 ARG A 215 VAL A 223 1 9 HELIX 11 11 PRO A 229 HIS A 239 1 11 HELIX 12 12 ASP A 242 ALA A 264 1 23 HELIX 13 13 PRO A 278 LEU A 287 1 10 HELIX 14 14 LYS B 2 ALA B 9 1 8 HELIX 15 15 ASP B 24 LYS B 39 1 16 HELIX 16 16 ALA B 40 ARG B 42 5 3 HELIX 17 17 ARG B 57 LEU B 70 1 14 HELIX 18 18 SER B 84 SER B 98 1 15 HELIX 19 19 TYR B 126 GLY B 139 1 14 HELIX 20 20 ASP B 140 VAL B 142 5 3 HELIX 21 21 SER B 158 ALA B 172 1 15 HELIX 22 22 ASN B 184 ALA B 198 1 15 HELIX 23 23 PRO B 210 THR B 221 1 12 HELIX 24 24 PRO B 229 HIS B 239 1 11 HELIX 25 25 ASP B 242 ALA B 264 1 23 HELIX 26 26 PRO B 278 GLY B 288 1 11 SHEET 1 A 4 PHE A 45 ILE A 48 0 SHEET 2 A 4 LEU A 14 PHE A 19 1 N PHE A 19 O SER A 47 SHEET 3 A 4 GLY A 268 TYR A 272 1 O PHE A 271 N GLU A 18 SHEET 4 A 4 GLY A 207 ILE A 208 1 N ILE A 208 O HIS A 270 SHEET 1 B 5 ALA A 76 THR A 79 0 SHEET 2 B 5 ASN A 102 LEU A 106 1 O LEU A 104 N ALA A 76 SHEET 3 B 5 SER A 143 ALA A 148 1 O GLY A 145 N LEU A 103 SHEET 4 B 5 PHE A 176 THR A 179 1 O ILE A 178 N GLY A 146 SHEET 5 B 5 ILE A 204 LEU A 205 1 O LEU A 205 N ALA A 177 SHEET 1 C 8 VAL B 46 ILE B 48 0 SHEET 2 C 8 LEU B 14 PHE B 19 1 N PHE B 19 O SER B 47 SHEET 3 C 8 GLY B 268 THR B 273 1 O PHE B 271 N SER B 16 SHEET 4 C 8 ILE B 204 ILE B 208 1 N ILE B 208 O TYR B 272 SHEET 5 C 8 PHE B 176 LEU B 181 1 N THR B 179 O LEU B 205 SHEET 6 C 8 SER B 143 ALA B 148 1 N ALA B 148 O GLN B 180 SHEET 7 C 8 ASN B 102 LEU B 106 1 N LEU B 103 O GLY B 145 SHEET 8 C 8 ALA B 76 THR B 79 1 N ALA B 76 O LEU B 104 CISPEP 1 SER A 55 THR A 56 0 -9.06 CISPEP 2 PRO B 110 PRO B 111 0 3.27 CISPEP 3 ASN B 275 LYS B 276 0 18.86 SITE 1 AC1 31 THR A 49 TYR A 50 HIS A 77 LEU A 104 SITE 2 AC1 31 LEU A 106 ARG A 107 GLY A 108 ASP A 109 SITE 3 AC1 31 TYR A 126 ALA A 127 ALA A 147 TYR A 149 SITE 4 AC1 31 HIS A 153 GLU A 155 SER A 156 HIS A 165 SITE 5 AC1 31 LYS A 169 ILE A 178 GLN A 180 TYR A 272 SITE 6 AC1 31 HOH A 329 HOH A 357 HOH A 368 HOH A 387 SITE 7 AC1 31 HOH A 390 HOH A 397 HOH A 418 HOH A 450 SITE 8 AC1 31 HOH A 473 HOH A 492 HOH A 502 SITE 1 AC2 7 GLU B 18 LEU B 104 ASP B 109 PRO B 110 SITE 2 AC2 7 ILE B 178 HIS B 270 TYR B 272 CRYST1 43.924 89.673 160.720 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022767 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006222 0.00000