HEADER TRANSFERASE 24-OCT-10 3APZ TITLE APO FORM OF ARABIDOPSIS MEDIUM/LONG-CHAIN LENGTH PRENYL PYROPHOSPHATE TITLE 2 SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES IN UNP 76-422; COMPND 5 EC: 2.5.1.30; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ATNPPPS, GPPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32 KEYWDS PRENYLTRANSFERASE, ALL ALPHA-HELICES FOLD, CHROLOPLAST, TRANSFERASE, KEYWDS 2 ISOPRENOID BIOSYNTHETIC PROCESS EXPDTA X-RAY DIFFRACTION AUTHOR F.-L.HSIEH,T.-H.CHANG,T.-P.KO,A.H.-J.WANG REVDAT 4 01-NOV-23 3APZ 1 SEQADV REVDAT 3 11-OCT-17 3APZ 1 REMARK REVDAT 2 29-JAN-14 3APZ 1 JRNL VERSN REVDAT 1 19-JAN-11 3APZ 0 JRNL AUTH F.-L.HSIEH,T.-H.CHANG,T.-P.KO,A.H.-J.WANG JRNL TITL STRUCTURE AND MECHANISM OF AN ARABIDOPSIS JRNL TITL 2 MEDIUM/LONG-CHAIN-LENGTH PRENYL PYROPHOSPHATE SYNTHASE JRNL REF PLANT PHYSIOL. V. 155 1079 2011 JRNL REFN ISSN 0032-0889 JRNL PMID 21220764 JRNL DOI 10.1104/PP.110.168799 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 28230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1371 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 27 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.63 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 810 REMARK 3 BIN R VALUE (WORKING SET) : 0.3129 REMARK 3 BIN FREE R VALUE : 0.3254 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 52 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.27100 REMARK 3 B22 (A**2) : -11.27000 REMARK 3 B33 (A**2) : -0.00100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.474 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.591 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.165 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.426 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 34.40 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3APZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000029550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING SINGLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33211 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1WY0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60%(V/V) TACSIMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.06300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.05600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.06300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.05600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.06300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.05600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.06300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.05600 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 74.25600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 88.05600 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 74.25600 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 88.05600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 74.25600 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 88.05600 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 74.25600 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 88.05600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 74.25600 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.06300 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 74.25600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 75.06300 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 74.25600 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 75.06300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 74.25600 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 75.06300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.25600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 88.05600 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.25600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 75.06300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 LYS A 35 REMARK 465 LEU A 36 REMARK 465 ALA A 37 REMARK 465 SER A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 GLU A 41 REMARK 465 TYR A 42 REMARK 465 PHE A 43 REMARK 465 PHE A 44 REMARK 465 LYS A 45 REMARK 465 ARG A 46 REMARK 465 ARG A 68 REMARK 465 VAL A 69 REMARK 465 PRO A 70 REMARK 465 GLU A 71 REMARK 465 ALA A 72 REMARK 465 LEU A 73 REMARK 465 ILE A 74 REMARK 465 GLY A 75 REMARK 465 GLU A 76 REMARK 465 SER A 77 REMARK 465 THR A 78 REMARK 465 ASP A 79 REMARK 465 ILE A 80 REMARK 465 VAL A 81 REMARK 465 LEU A 110 REMARK 465 ASP A 111 REMARK 465 ASP A 112 REMARK 465 ALA A 113 REMARK 465 ASP A 114 REMARK 465 THR A 115 REMARK 465 ARG A 116 REMARK 465 ARG A 117 REMARK 465 GLY A 118 REMARK 465 VAL A 119 REMARK 465 GLY A 120 REMARK 465 SER A 121 REMARK 465 LEU A 122 REMARK 465 ASN A 123 REMARK 465 VAL A 124 REMARK 465 VAL A 125 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 VAL B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 7 REMARK 465 LEU B 8 REMARK 465 LYS B 35 REMARK 465 LEU B 36 REMARK 465 ALA B 37 REMARK 465 SER B 38 REMARK 465 ALA B 39 REMARK 465 ALA B 40 REMARK 465 GLU B 41 REMARK 465 TYR B 42 REMARK 465 PHE B 43 REMARK 465 PHE B 44 REMARK 465 LYS B 45 REMARK 465 ARG B 46 REMARK 465 ARG B 68 REMARK 465 VAL B 69 REMARK 465 PRO B 70 REMARK 465 GLU B 71 REMARK 465 ALA B 72 REMARK 465 LEU B 73 REMARK 465 ILE B 74 REMARK 465 GLY B 75 REMARK 465 GLU B 76 REMARK 465 SER B 77 REMARK 465 THR B 78 REMARK 465 ASP B 79 REMARK 465 ILE B 80 REMARK 465 VAL B 81 REMARK 465 ASP B 111 REMARK 465 ASP B 112 REMARK 465 ALA B 113 REMARK 465 ASP B 114 REMARK 465 THR B 115 REMARK 465 ARG B 116 REMARK 465 ARG B 117 REMARK 465 GLY B 118 REMARK 465 VAL B 119 REMARK 465 GLY B 120 REMARK 465 SER B 121 REMARK 465 LEU B 122 REMARK 465 ASN B 123 REMARK 465 VAL B 124 REMARK 465 VAL B 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 158 CA - CB - CG ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 -36.43 -36.09 REMARK 500 LYS A 24 -1.27 -55.58 REMARK 500 VAL A 29 61.58 -157.89 REMARK 500 ASN A 128 -71.82 15.76 REMARK 500 PHE A 270 82.76 -152.20 REMARK 500 VAL A 280 6.53 -68.77 REMARK 500 ASP A 283 119.08 -160.83 REMARK 500 PHE B 11 -71.80 -65.98 REMARK 500 SER B 12 -16.27 -44.03 REMARK 500 LYS B 24 -7.07 -53.63 REMARK 500 ASN B 128 -74.86 28.17 REMARK 500 PHE B 270 87.61 -154.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 191 0.07 SIDE CHAIN REMARK 500 TYR B 191 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AQ0 RELATED DB: PDB DBREF 3APZ A 2 348 UNP Q9FT89 Q9FT89_ARATH 76 422 DBREF 3APZ B 2 348 UNP Q9FT89 Q9FT89_ARATH 76 422 SEQADV 3APZ GLY A 1 UNP Q9FT89 EXPRESSION TAG SEQADV 3APZ GLY B 1 UNP Q9FT89 EXPRESSION TAG SEQRES 1 A 348 GLY SER LEU VAL GLU GLU GLU LEU ASP PRO PHE SER LEU SEQRES 2 A 348 VAL ALA ASP GLU LEU SER LEU LEU SER ASN LYS LEU ARG SEQRES 3 A 348 GLU MET VAL LEU ALA GLU VAL PRO LYS LEU ALA SER ALA SEQRES 4 A 348 ALA GLU TYR PHE PHE LYS ARG GLY VAL GLN GLY LYS GLN SEQRES 5 A 348 PHE ARG SER THR ILE LEU LEU LEU MET ALA THR ALA LEU SEQRES 6 A 348 ASP VAL ARG VAL PRO GLU ALA LEU ILE GLY GLU SER THR SEQRES 7 A 348 ASP ILE VAL THR SER GLU LEU ARG VAL ARG GLN ARG GLY SEQRES 8 A 348 ILE ALA GLU ILE THR GLU MET ILE HIS VAL ALA SER LEU SEQRES 9 A 348 LEU HIS ASP ASP VAL LEU ASP ASP ALA ASP THR ARG ARG SEQRES 10 A 348 GLY VAL GLY SER LEU ASN VAL VAL MET GLY ASN LYS MET SEQRES 11 A 348 SER VAL LEU ALA GLY ASP PHE LEU LEU SER ARG ALA CYS SEQRES 12 A 348 GLY ALA LEU ALA ALA LEU LYS ASN THR GLU VAL VAL ALA SEQRES 13 A 348 LEU LEU ALA THR ALA VAL GLU HIS LEU VAL THR GLY GLU SEQRES 14 A 348 THR MET GLU ILE THR SER SER THR GLU GLN ARG TYR SER SEQRES 15 A 348 MET ASP TYR TYR MET GLN LYS THR TYR TYR LYS THR ALA SEQRES 16 A 348 SER LEU ILE SER ASN SER CYS LYS ALA VAL ALA VAL LEU SEQRES 17 A 348 THR GLY GLN THR ALA GLU VAL ALA VAL LEU ALA PHE GLU SEQRES 18 A 348 TYR GLY ARG ASN LEU GLY LEU ALA PHE GLN LEU ILE ASP SEQRES 19 A 348 ASP ILE LEU ASP PHE THR GLY THR SER ALA SER LEU GLY SEQRES 20 A 348 LYS GLY SER LEU SER ASP ILE ARG HIS GLY VAL ILE THR SEQRES 21 A 348 ALA PRO ILE LEU PHE ALA MET GLU GLU PHE PRO GLN LEU SEQRES 22 A 348 ARG GLU VAL VAL ASP GLN VAL GLU LYS ASP PRO ARG ASN SEQRES 23 A 348 VAL ASP ILE ALA LEU GLU TYR LEU GLY LYS SER LYS GLY SEQRES 24 A 348 ILE GLN ARG ALA ARG GLU LEU ALA MET GLU HIS ALA ASN SEQRES 25 A 348 LEU ALA ALA ALA ALA ILE GLY SER LEU PRO GLU THR ASP SEQRES 26 A 348 ASN GLU ASP VAL LYS ARG SER ARG ARG ALA LEU ILE ASP SEQRES 27 A 348 LEU THR HIS ARG VAL ILE THR ARG ASN LYS SEQRES 1 B 348 GLY SER LEU VAL GLU GLU GLU LEU ASP PRO PHE SER LEU SEQRES 2 B 348 VAL ALA ASP GLU LEU SER LEU LEU SER ASN LYS LEU ARG SEQRES 3 B 348 GLU MET VAL LEU ALA GLU VAL PRO LYS LEU ALA SER ALA SEQRES 4 B 348 ALA GLU TYR PHE PHE LYS ARG GLY VAL GLN GLY LYS GLN SEQRES 5 B 348 PHE ARG SER THR ILE LEU LEU LEU MET ALA THR ALA LEU SEQRES 6 B 348 ASP VAL ARG VAL PRO GLU ALA LEU ILE GLY GLU SER THR SEQRES 7 B 348 ASP ILE VAL THR SER GLU LEU ARG VAL ARG GLN ARG GLY SEQRES 8 B 348 ILE ALA GLU ILE THR GLU MET ILE HIS VAL ALA SER LEU SEQRES 9 B 348 LEU HIS ASP ASP VAL LEU ASP ASP ALA ASP THR ARG ARG SEQRES 10 B 348 GLY VAL GLY SER LEU ASN VAL VAL MET GLY ASN LYS MET SEQRES 11 B 348 SER VAL LEU ALA GLY ASP PHE LEU LEU SER ARG ALA CYS SEQRES 12 B 348 GLY ALA LEU ALA ALA LEU LYS ASN THR GLU VAL VAL ALA SEQRES 13 B 348 LEU LEU ALA THR ALA VAL GLU HIS LEU VAL THR GLY GLU SEQRES 14 B 348 THR MET GLU ILE THR SER SER THR GLU GLN ARG TYR SER SEQRES 15 B 348 MET ASP TYR TYR MET GLN LYS THR TYR TYR LYS THR ALA SEQRES 16 B 348 SER LEU ILE SER ASN SER CYS LYS ALA VAL ALA VAL LEU SEQRES 17 B 348 THR GLY GLN THR ALA GLU VAL ALA VAL LEU ALA PHE GLU SEQRES 18 B 348 TYR GLY ARG ASN LEU GLY LEU ALA PHE GLN LEU ILE ASP SEQRES 19 B 348 ASP ILE LEU ASP PHE THR GLY THR SER ALA SER LEU GLY SEQRES 20 B 348 LYS GLY SER LEU SER ASP ILE ARG HIS GLY VAL ILE THR SEQRES 21 B 348 ALA PRO ILE LEU PHE ALA MET GLU GLU PHE PRO GLN LEU SEQRES 22 B 348 ARG GLU VAL VAL ASP GLN VAL GLU LYS ASP PRO ARG ASN SEQRES 23 B 348 VAL ASP ILE ALA LEU GLU TYR LEU GLY LYS SER LYS GLY SEQRES 24 B 348 ILE GLN ARG ALA ARG GLU LEU ALA MET GLU HIS ALA ASN SEQRES 25 B 348 LEU ALA ALA ALA ALA ILE GLY SER LEU PRO GLU THR ASP SEQRES 26 B 348 ASN GLU ASP VAL LYS ARG SER ARG ARG ALA LEU ILE ASP SEQRES 27 B 348 LEU THR HIS ARG VAL ILE THR ARG ASN LYS FORMUL 3 HOH *373(H2 O) HELIX 1 1 VAL A 14 LYS A 24 1 11 HELIX 2 2 LEU A 25 MET A 28 5 4 HELIX 3 3 VAL A 48 THR A 63 1 16 HELIX 4 4 THR A 82 VAL A 109 1 28 HELIX 5 5 GLY A 127 LEU A 149 1 23 HELIX 6 6 ASN A 151 THR A 174 1 24 HELIX 7 7 SER A 176 TYR A 181 1 6 HELIX 8 8 SER A 182 ALA A 195 1 14 HELIX 9 9 ALA A 195 LEU A 208 1 14 HELIX 10 10 THR A 212 GLY A 241 1 30 HELIX 11 11 LEU A 251 HIS A 256 1 6 HELIX 12 12 THR A 260 PHE A 270 1 11 HELIX 13 13 GLN A 272 GLN A 279 1 8 HELIX 14 14 PRO A 284 SER A 297 1 14 HELIX 15 15 LYS A 298 GLY A 319 1 22 HELIX 16 16 ASN A 326 ARG A 346 1 21 HELIX 17 17 PHE B 11 LEU B 13 5 3 HELIX 18 18 VAL B 14 LYS B 24 1 11 HELIX 19 19 LEU B 25 MET B 28 5 4 HELIX 20 20 GLY B 47 ALA B 64 1 18 HELIX 21 21 THR B 82 LEU B 110 1 29 HELIX 22 22 ASN B 128 ALA B 148 1 21 HELIX 23 23 ASN B 151 SER B 175 1 25 HELIX 24 24 SER B 176 TYR B 181 1 6 HELIX 25 25 SER B 182 ALA B 195 1 14 HELIX 26 26 ALA B 195 LEU B 208 1 14 HELIX 27 27 THR B 212 GLY B 241 1 30 HELIX 28 28 ASP B 253 GLY B 257 5 5 HELIX 29 29 THR B 260 PHE B 270 1 11 HELIX 30 30 GLN B 272 VAL B 280 1 9 HELIX 31 31 PRO B 284 SER B 297 1 14 HELIX 32 32 LYS B 298 LEU B 321 1 24 HELIX 33 33 ASN B 326 ARG B 346 1 21 CISPEP 1 VAL A 33 PRO A 34 0 0.53 CISPEP 2 VAL B 33 PRO B 34 0 -0.03 CRYST1 148.512 150.126 176.112 90.00 90.00 90.00 F 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006733 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006661 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005678 0.00000