HEADER PROTEIN BINDING 10-DEC-10 3AS8 TITLE MAMA MSR-1 P41212 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAGNETOSOME PROTEIN MAMA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 41-217; COMPND 5 SYNONYM: MAGNETOSOME PROTEIN MAMA, TPR-LIKE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOSPIRILLUM GRYPHISWALDENSE; SOURCE 3 ORGANISM_TAXID: 431944; SOURCE 4 STRAIN: MSR-1; SOURCE 5 GENE: MAMA, MGI495, MGR_4099; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET52B KEYWDS TETRATRICOPEPTIDE REPEATS (TPR) CONTAINING PROTEIN, TPR PROTEIN, KEYWDS 2 PROTEIN-PROTEIN INTERACTIONS, MAMA, CYTOSOL, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.ZEYTUNI,G.DAVIDOV,R.ZARIVACH REVDAT 3 01-NOV-23 3AS8 1 REMARK SEQADV REVDAT 2 26-JUN-13 3AS8 1 JRNL REVDAT 1 20-JUL-11 3AS8 0 JRNL AUTH N.ZEYTUNI,E.OZYAMAK,K.BEN-HARUSH,G.DAVIDOV,M.LEVIN,Y.GAT, JRNL AUTH 2 T.MOYAL,A.BRIK,A.KOMEILI,R.ZARIVACH JRNL TITL SELF-RECOGNITION MECHANISM OF MAMA, A MAGNETOSOME-ASSOCIATED JRNL TITL 2 TPR-CONTAINING PROTEIN, PROMOTES COMPLEX ASSEMBLY JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 E480 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21784982 JRNL DOI 10.1073/PNAS.1103367108 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 17037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 861 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1106 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.53000 REMARK 3 B22 (A**2) : -1.53000 REMARK 3 B33 (A**2) : 3.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.722 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1511 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1010 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2060 ; 1.838 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2464 ; 1.114 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 196 ; 5.241 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;40.399 ;24.026 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 260 ;16.073 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;11.003 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 231 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1713 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 312 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 925 ; 1.047 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 376 ; 0.362 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1491 ; 1.754 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 586 ; 3.142 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 562 ; 4.574 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2905 -2.2478 29.1592 REMARK 3 T TENSOR REMARK 3 T11: 0.6360 T22: 0.3137 REMARK 3 T33: 0.1322 T12: -0.2726 REMARK 3 T13: 0.0631 T23: -0.0899 REMARK 3 L TENSOR REMARK 3 L11: 12.1731 L22: 16.4914 REMARK 3 L33: 20.8438 L12: -14.1152 REMARK 3 L13: 1.4453 L23: -2.7646 REMARK 3 S TENSOR REMARK 3 S11: -0.8175 S12: -0.7005 S13: 0.3358 REMARK 3 S21: 1.2929 S22: 0.8295 S23: -0.3431 REMARK 3 S31: -0.2265 S32: -0.3297 S33: -0.0120 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4191 -3.4141 19.0735 REMARK 3 T TENSOR REMARK 3 T11: 0.0916 T22: 0.1035 REMARK 3 T33: 0.1394 T12: 0.0116 REMARK 3 T13: 0.0129 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.1571 L22: 3.8160 REMARK 3 L33: 4.8035 L12: 1.0882 REMARK 3 L13: 2.3366 L23: 1.7485 REMARK 3 S TENSOR REMARK 3 S11: -0.1280 S12: -0.0256 S13: 0.0948 REMARK 3 S21: 0.0145 S22: -0.0244 S23: 0.0365 REMARK 3 S31: -0.2629 S32: -0.0564 S33: 0.1525 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6254 -9.3593 12.7841 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.0926 REMARK 3 T33: 0.1025 T12: -0.0125 REMARK 3 T13: 0.0111 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 3.2316 L22: 2.1535 REMARK 3 L33: 5.7163 L12: -0.5150 REMARK 3 L13: -0.3951 L23: -0.9924 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: 0.0782 S13: 0.3922 REMARK 3 S21: -0.0647 S22: -0.0637 S23: 0.0343 REMARK 3 S31: -0.2449 S32: -0.1473 S33: 0.0047 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1974 -12.3447 26.3488 REMARK 3 T TENSOR REMARK 3 T11: 0.2354 T22: 0.1401 REMARK 3 T33: 0.0496 T12: -0.0459 REMARK 3 T13: 0.0564 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 10.8660 L22: 3.9169 REMARK 3 L33: 1.8492 L12: -0.7329 REMARK 3 L13: -1.2507 L23: 0.1456 REMARK 3 S TENSOR REMARK 3 S11: 0.2035 S12: -0.9172 S13: -0.0407 REMARK 3 S21: 0.6814 S22: -0.1132 S23: 0.3025 REMARK 3 S31: 0.1870 S32: -0.0752 S33: -0.0904 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5767 -16.1013 15.2499 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.0924 REMARK 3 T33: 0.0737 T12: -0.0332 REMARK 3 T13: 0.0099 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.2457 L22: 3.1013 REMARK 3 L33: 3.3037 L12: 0.4082 REMARK 3 L13: -0.9411 L23: 0.1906 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.0085 S13: 0.0116 REMARK 3 S21: 0.0632 S22: -0.0967 S23: 0.1317 REMARK 3 S31: 0.0534 S32: -0.1600 S33: 0.0932 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8303 -22.5453 19.5053 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.1207 REMARK 3 T33: 0.0506 T12: -0.0389 REMARK 3 T13: -0.0296 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 6.3416 L22: 2.9468 REMARK 3 L33: 2.9562 L12: -1.1078 REMARK 3 L13: -3.6499 L23: 0.9649 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: -0.3515 S13: -0.1884 REMARK 3 S21: 0.1484 S22: -0.0684 S23: -0.2106 REMARK 3 S31: 0.1833 S32: 0.0787 S33: 0.1272 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5680 -17.7679 25.6588 REMARK 3 T TENSOR REMARK 3 T11: 0.1015 T22: 0.2177 REMARK 3 T33: 0.0920 T12: -0.0463 REMARK 3 T13: -0.0056 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 6.9194 L22: 7.1240 REMARK 3 L33: 2.3260 L12: -5.0028 REMARK 3 L13: -0.6652 L23: -2.3333 REMARK 3 S TENSOR REMARK 3 S11: -0.1420 S12: -0.5342 S13: 0.0890 REMARK 3 S21: 0.4562 S22: 0.2050 S23: -0.0032 REMARK 3 S31: -0.2701 S32: 0.1643 S33: -0.0629 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8494 -21.5644 14.1292 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.0954 REMARK 3 T33: 0.0840 T12: -0.0044 REMARK 3 T13: -0.0227 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.2829 L22: 1.1885 REMARK 3 L33: 1.6151 L12: 0.3632 REMARK 3 L13: 0.3215 L23: 0.3403 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: -0.1682 S13: -0.0115 REMARK 3 S21: 0.0835 S22: -0.0185 S23: -0.0124 REMARK 3 S31: -0.0024 S32: -0.0349 S33: -0.0201 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9776 -24.5980 5.7108 REMARK 3 T TENSOR REMARK 3 T11: 0.0875 T22: 0.0851 REMARK 3 T33: 0.0957 T12: -0.0045 REMARK 3 T13: -0.0172 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.0268 L22: 1.4122 REMARK 3 L33: 1.9467 L12: 0.0035 REMARK 3 L13: 0.2438 L23: -0.7716 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.0291 S13: -0.0625 REMARK 3 S21: -0.0330 S22: -0.0239 S23: -0.1436 REMARK 3 S31: 0.0641 S32: 0.0209 S33: 0.0024 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6442 -34.3884 7.9757 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.1962 REMARK 3 T33: 0.0727 T12: -0.1509 REMARK 3 T13: -0.0456 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 7.4770 L22: 6.2780 REMARK 3 L33: 2.1915 L12: -3.9840 REMARK 3 L13: 2.2312 L23: -3.3898 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: -0.5315 S13: -0.2211 REMARK 3 S21: 0.3063 S22: 0.0976 S23: 0.0052 REMARK 3 S31: 0.1206 S32: -0.2772 S33: -0.0640 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0302 -22.1908 -0.8861 REMARK 3 T TENSOR REMARK 3 T11: 0.0844 T22: 0.1006 REMARK 3 T33: 0.0924 T12: 0.0003 REMARK 3 T13: -0.0064 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.8483 L22: 2.2270 REMARK 3 L33: 3.2388 L12: -1.0502 REMARK 3 L13: 0.4267 L23: -0.1701 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: 0.0472 S13: 0.0354 REMARK 3 S21: -0.1101 S22: 0.0149 S23: -0.1133 REMARK 3 S31: -0.0683 S32: -0.0964 S33: 0.0345 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4092 -32.9507 -3.2111 REMARK 3 T TENSOR REMARK 3 T11: 0.1095 T22: 0.1036 REMARK 3 T33: 0.0904 T12: 0.0033 REMARK 3 T13: -0.0007 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.6281 L22: 4.6266 REMARK 3 L33: 1.9822 L12: 2.6244 REMARK 3 L13: -0.8403 L23: -0.6064 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.0495 S13: -0.1847 REMARK 3 S21: 0.0225 S22: -0.0462 S23: -0.3515 REMARK 3 S31: 0.1664 S32: 0.0836 S33: 0.0448 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 195 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): -15.2089 -33.9896 -8.3004 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.1115 REMARK 3 T33: 0.0803 T12: 0.0044 REMARK 3 T13: -0.0043 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.8340 L22: 2.9831 REMARK 3 L33: 2.8875 L12: 0.8830 REMARK 3 L13: -0.8131 L23: 0.6438 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.0705 S13: 0.0859 REMARK 3 S21: -0.0802 S22: 0.0057 S23: 0.0375 REMARK 3 S31: -0.1222 S32: -0.1454 S33: -0.0457 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1384 -21.5603 -15.2269 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.1589 REMARK 3 T33: 0.2613 T12: 0.0118 REMARK 3 T13: 0.1116 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 3.6921 L22: 9.2360 REMARK 3 L33: 1.4370 L12: -5.5241 REMARK 3 L13: -2.1317 L23: 2.8012 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: 0.0655 S13: -0.0860 REMARK 3 S21: -0.0081 S22: 0.0168 S23: -0.0477 REMARK 3 S31: -0.1962 S32: -0.1541 S33: -0.0579 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8190 -16.3233 -17.1085 REMARK 3 T TENSOR REMARK 3 T11: 0.3031 T22: 0.1977 REMARK 3 T33: 0.1545 T12: -0.0280 REMARK 3 T13: 0.0166 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 21.5758 L22: 16.0117 REMARK 3 L33: 29.2391 L12: 16.2499 REMARK 3 L13: -14.3758 L23: -2.2206 REMARK 3 S TENSOR REMARK 3 S11: -0.5240 S12: 0.2183 S13: 0.2757 REMARK 3 S21: -0.5737 S22: 0.3660 S23: 0.3313 REMARK 3 S31: 0.0890 S32: 0.1002 S33: 0.1580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3AS8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000029631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17139 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 17.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 19.00 REMARK 200 R MERGE FOR SHELL (I) : 0.72500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COOT REMARK 200 STARTING MODEL: PDB ENTRY 3AS5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFAT, HEPES, NACL, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.04600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.44400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.44400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.02300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.44400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.44400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.06900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.44400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.44400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.02300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.44400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.44400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.06900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.04600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 39 REMARK 465 GLY A 40 REMARK 465 ASN A 41 REMARK 465 PRO A 223 REMARK 465 ARG A 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 166 O HOH A 371 1.53 REMARK 500 O HOH A 397 O HOH A 428 1.96 REMARK 500 O HOH A 18 O HOH A 249 2.10 REMARK 500 O4 SO4 A 2 O HOH A 328 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 379 O HOH A 423 7555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AS4 RELATED DB: PDB REMARK 900 WILD TYPE REMARK 900 RELATED ID: 3AS5 RELATED DB: PDB REMARK 900 WILD TYPE REMARK 900 RELATED ID: 3ASF RELATED DB: PDB REMARK 900 HOMOLOGOUS PROTEIN STRUCTURE REMARK 900 RELATED ID: 3ASD RELATED DB: PDB REMARK 900 R50E MUTANT REMARK 900 RELATED ID: 3ASG RELATED DB: PDB REMARK 900 D159K MUTANT REMARK 900 RELATED ID: 3ASH RELATED DB: PDB REMARK 900 D159K MUTANT DBREF 3AS8 A 41 217 UNP Q93DY9 Q93DY9_9PROT 41 217 SEQADV 3AS8 MET A 39 UNP Q93DY9 EXPRESSION TAG SEQADV 3AS8 GLY A 40 UNP Q93DY9 EXPRESSION TAG SEQADV 3AS8 GLU A 218 UNP Q93DY9 EXPRESSION TAG SEQADV 3AS8 LEU A 219 UNP Q93DY9 EXPRESSION TAG SEQADV 3AS8 ALA A 220 UNP Q93DY9 EXPRESSION TAG SEQADV 3AS8 LEU A 221 UNP Q93DY9 EXPRESSION TAG SEQADV 3AS8 VAL A 222 UNP Q93DY9 EXPRESSION TAG SEQADV 3AS8 PRO A 223 UNP Q93DY9 EXPRESSION TAG SEQADV 3AS8 ARG A 224 UNP Q93DY9 EXPRESSION TAG SEQRES 1 A 186 MET GLY ASN ASP ASP ILE ARG GLN VAL TYR TYR ARG ASP SEQRES 2 A 186 LYS GLY ILE SER HIS ALA LYS ALA GLY ARG TYR SER GLU SEQRES 3 A 186 ALA VAL VAL MET LEU GLU GLN VAL TYR ASP ALA ASP ALA SEQRES 4 A 186 PHE ASP VAL GLU VAL ALA LEU HIS LEU GLY ILE ALA TYR SEQRES 5 A 186 VAL LYS THR GLY ALA VAL ASP ARG GLY THR GLU LEU LEU SEQRES 6 A 186 GLU ARG SER ILE ALA ASP ALA PRO ASP ASN ILE LYS VAL SEQRES 7 A 186 ALA THR VAL LEU GLY LEU THR TYR VAL GLN VAL GLN LYS SEQRES 8 A 186 TYR ASP LEU ALA VAL PRO LEU LEU VAL LYS VAL ALA GLU SEQRES 9 A 186 ALA ASN PRO VAL ASN PHE ASN VAL ARG PHE ARG LEU GLY SEQRES 10 A 186 VAL ALA LEU ASP ASN LEU GLY ARG PHE ASP GLU ALA ILE SEQRES 11 A 186 ASP SER PHE LYS ILE ALA LEU GLY LEU ARG PRO ASN GLU SEQRES 12 A 186 GLY LYS VAL HIS ARG ALA ILE ALA TYR SER TYR GLU GLN SEQRES 13 A 186 MET GLY SER HIS GLU GLU ALA LEU PRO HIS PHE LYS LYS SEQRES 14 A 186 ALA ASN GLU LEU ASP GLU ARG SER ALA VAL GLU LEU ALA SEQRES 15 A 186 LEU VAL PRO ARG HET SO4 A 1 5 HET SO4 A 2 5 HET SO4 A 3 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *238(H2 O) HELIX 1 1 ASP A 42 ALA A 59 1 18 HELIX 2 2 ARG A 61 GLU A 70 1 10 HELIX 3 3 ASP A 79 THR A 93 1 15 HELIX 4 4 ALA A 95 ALA A 110 1 16 HELIX 5 5 ASN A 113 VAL A 127 1 15 HELIX 6 6 LYS A 129 ASN A 144 1 16 HELIX 7 7 ASN A 147 LEU A 161 1 15 HELIX 8 8 ARG A 163 ARG A 178 1 16 HELIX 9 9 GLU A 181 MET A 195 1 15 HELIX 10 10 SER A 197 VAL A 222 1 26 SITE 1 AC1 5 ASN A 149 ARG A 178 HOH A 260 HOH A 261 SITE 2 AC1 5 HOH A 263 SITE 1 AC2 3 ARG A 153 HOH A 327 HOH A 328 SITE 1 AC3 5 LYS A 92 HIS A 198 HOH A 278 HOH A 288 SITE 2 AC3 5 HOH A 292 CRYST1 58.888 58.888 144.092 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016981 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006940 0.00000