HEADER TRANSFERASE 13-JAN-11 3ATT TITLE CRYSTAL STRUCTURE OF RV3168 WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-378; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: MT3257, RV3168; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HYPOTHETICAL PROTEIN, PUTATIVE AMINOGLYCOSIDE PHOSPHORTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-G.KIM,S.KIM,C.M.T.NGUYEN,K.-J.KIM REVDAT 4 13-MAR-24 3ATT 1 REMARK LINK REVDAT 3 11-OCT-17 3ATT 1 REMARK REVDAT 2 19-JUN-13 3ATT 1 JRNL REVDAT 1 03-AUG-11 3ATT 0 JRNL AUTH S.KIM,C.M.T.NGUYEN,E.-J.KIM,K.-J.KIM JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RV3168: A JRNL TITL 2 PUTATIVE AMINOGLYCOSIDE ANTIBIOTICS RESISTANCE ENZYME JRNL REF PROTEINS V. 79 2983 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 21905120 JRNL DOI 10.1002/PROT.23119 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 21869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1195 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1248 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.59000 REMARK 3 B22 (A**2) : -1.37000 REMARK 3 B33 (A**2) : -2.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2939 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4024 ; 1.973 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 350 ; 6.179 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;33.841 ;22.979 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;15.454 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.363 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2285 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1760 ; 1.084 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2846 ; 1.896 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1179 ; 3.173 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1178 ; 4.884 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ATT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000029685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23985 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23192 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000, CA(OAC)2, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.93800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.63250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.05200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.63250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.93800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.05200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 191 REMARK 465 GLY A 192 REMARK 465 ARG A 193 REMARK 465 THR A 194 REMARK 465 SER A 195 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 215 CG GLU A 215 CD 0.098 REMARK 500 TYR A 330 CD1 TYR A 330 CE1 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 312 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 312 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 358 CB - CG - OD1 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP A 358 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 47 102.07 -162.42 REMARK 500 ASP A 267 69.61 67.38 REMARK 500 THR A 298 46.55 37.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 267 OD2 REMARK 620 2 ASP A 267 OD1 54.2 REMARK 620 3 GLU A 269 OE1 143.0 94.8 REMARK 620 4 ATP A 510 O2B 83.5 79.2 112.6 REMARK 620 5 ACT A1209 OXT 91.1 105.1 77.0 169.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 381 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 106 O REMARK 620 2 THR A 109 O 93.1 REMARK 620 3 HOH A 425 O 87.0 70.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 379 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 254 OD1 REMARK 620 2 ASP A 267 OD2 86.2 REMARK 620 3 ATP A 510 O2A 83.7 103.1 REMARK 620 4 ATP A 510 O1G 136.8 95.0 137.0 REMARK 620 5 ATP A 510 O3B 163.0 86.5 82.9 59.3 REMARK 620 6 ATP A 510 O2G 129.3 144.4 84.0 60.2 59.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 380 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 375 O REMARK 620 2 GLU A 377 OE1 107.8 REMARK 620 3 GLU A 377 OE2 77.0 54.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3545 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 510 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ATS RELATED DB: PDB DBREF 3ATT A 22 378 UNP O53318 O53318_MYCTU 22 378 SEQRES 1 A 357 THR LEU PRO ALA VAL ILE SER ARG TRP LEU SER SER VAL SEQRES 2 A 357 LEU PRO GLY GLY ALA ALA PRO GLU VAL THR VAL GLU SER SEQRES 3 A 357 GLY VAL ASP SER THR GLY MET SER SER GLU THR ILE ILE SEQRES 4 A 357 LEU THR ALA ARG TRP GLN GLN ASP GLY ARG SER ILE GLN SEQRES 5 A 357 GLN LYS LEU VAL ALA ARG VAL ALA PRO ALA ALA GLU ASP SEQRES 6 A 357 VAL PRO VAL PHE PRO THR TYR ARG LEU ASP HIS GLN PHE SEQRES 7 A 357 GLU VAL ILE ARG LEU VAL GLY GLU LEU THR ASP VAL PRO SEQRES 8 A 357 VAL PRO ARG VAL ARG TRP ILE GLU THR THR GLY ASP VAL SEQRES 9 A 357 LEU GLY THR PRO PHE PHE LEU MET ASP TYR VAL GLU GLY SEQRES 10 A 357 VAL VAL PRO PRO ASP VAL MET PRO TYR THR PHE GLY ASP SEQRES 11 A 357 ASN TRP PHE ALA ASP ALA PRO ALA GLU ARG GLN ARG GLN SEQRES 12 A 357 LEU GLN ASP ALA THR VAL ALA ALA LEU ALA THR LEU HIS SEQRES 13 A 357 SER ILE PRO ASN ALA GLN ASN THR PHE SER PHE LEU THR SEQRES 14 A 357 GLN GLY ARG THR SER ASP THR THR LEU HIS ARG HIS PHE SEQRES 15 A 357 ASN TRP VAL ARG SER TRP TYR ASP PHE ALA VAL GLU GLY SEQRES 16 A 357 ILE GLY ARG SER PRO LEU LEU GLU ARG THR PHE GLU TRP SEQRES 17 A 357 LEU GLN SER HIS TRP PRO ASP ASP ALA ALA ALA ARG GLU SEQRES 18 A 357 PRO VAL LEU LEU TRP GLY ASP ALA ARG VAL GLY ASN VAL SEQRES 19 A 357 LEU TYR ARG ASP PHE GLN PRO VAL ALA VAL LEU ASP TRP SEQRES 20 A 357 GLU MET VAL ALA LEU GLY PRO ARG GLU LEU ASP VAL ALA SEQRES 21 A 357 TRP MET ILE PHE ALA HIS ARG VAL PHE GLN GLU LEU ALA SEQRES 22 A 357 GLY LEU ALA THR LEU PRO GLY LEU PRO GLU VAL MET ARG SEQRES 23 A 357 GLU ASP ASP VAL ARG ALA THR TYR GLN ALA LEU THR GLY SEQRES 24 A 357 VAL GLU LEU GLY ASP LEU HIS TRP PHE TYR VAL TYR SER SEQRES 25 A 357 GLY VAL MET TRP ALA CYS VAL PHE MET ARG THR GLY ALA SEQRES 26 A 357 ARG ARG VAL HIS PHE GLY GLU ILE GLU LYS PRO ASP ASP SEQRES 27 A 357 VAL GLU SER LEU PHE TYR HIS ALA GLY LEU MET LYS HIS SEQRES 28 A 357 LEU LEU GLY GLU GLU HIS HET MG A 1 1 HET MG A 379 1 HET CA A 380 1 HET ACT A1209 4 HET CA A 381 1 HET GOL A3545 6 HET ATP A 510 31 HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 2(MG 2+) FORMUL 4 CA 2(CA 2+) FORMUL 5 ACT C2 H3 O2 1- FORMUL 7 GOL C3 H8 O3 FORMUL 8 ATP C10 H16 N5 O13 P3 FORMUL 9 HOH *216(H2 O) HELIX 1 1 THR A 22 LEU A 35 1 14 HELIX 2 2 ALA A 83 VAL A 87 5 5 HELIX 3 3 ARG A 94 THR A 109 1 16 HELIX 4 4 PRO A 146 GLY A 150 5 5 HELIX 5 5 PRO A 158 SER A 178 1 21 HELIX 6 6 ASN A 181 PHE A 186 1 6 HELIX 7 7 SER A 187 THR A 190 5 4 HELIX 8 8 THR A 197 GLY A 218 1 22 HELIX 9 9 SER A 220 HIS A 233 1 14 HELIX 10 10 PRO A 235 ARG A 241 1 7 HELIX 11 11 ARG A 251 GLY A 253 5 3 HELIX 12 12 ARG A 276 ALA A 297 1 22 HELIX 13 13 ARG A 307 GLY A 320 1 14 HELIX 14 14 LEU A 326 PHE A 351 1 26 HELIX 15 15 ASP A 359 PHE A 364 5 6 HELIX 16 16 HIS A 366 GLY A 375 1 10 SHEET 1 A 5 GLU A 42 VAL A 49 0 SHEET 2 A 5 SER A 55 GLN A 67 -1 O ARG A 64 N GLU A 42 SHEET 3 A 5 ARG A 70 VAL A 80 -1 O GLN A 74 N ALA A 63 SHEET 4 A 5 PHE A 130 ASP A 134 -1 O MET A 133 N VAL A 77 SHEET 5 A 5 VAL A 116 GLU A 120 -1 N ARG A 117 O LEU A 132 SHEET 1 B 2 VAL A 244 LEU A 246 0 SHEET 2 B 2 ALA A 272 GLY A 274 -1 O ALA A 272 N LEU A 246 SHEET 1 C 2 VAL A 255 ARG A 258 0 SHEET 2 C 2 GLN A 261 VAL A 265 -1 O VAL A 263 N LEU A 256 LINK MG MG A 1 OD2 ASP A 267 1555 1555 2.41 LINK MG MG A 1 OD1 ASP A 267 1555 1555 2.44 LINK MG MG A 1 OE1 GLU A 269 1555 1555 2.06 LINK MG MG A 1 O2B ATP A 510 1555 1555 2.35 LINK MG MG A 1 OXT ACT A1209 1555 1555 3.00 LINK O GLY A 106 CA CA A 381 1555 1555 2.35 LINK O THR A 109 CA CA A 381 1555 1555 2.55 LINK OD1 ASN A 254 MG MG A 379 1555 1555 2.27 LINK OD2 ASP A 267 MG MG A 379 1555 1555 2.26 LINK O GLY A 375 CA CA A 380 1555 1555 2.42 LINK OE1 GLU A 377 CA CA A 380 1555 1555 2.36 LINK OE2 GLU A 377 CA CA A 380 1555 1555 2.39 LINK MG MG A 379 O2A ATP A 510 1555 1555 2.21 LINK MG MG A 379 O1G ATP A 510 1555 1555 2.26 LINK MG MG A 379 O3B ATP A 510 1555 1555 2.33 LINK MG MG A 379 O2G ATP A 510 1555 1555 2.84 LINK CA CA A 381 O HOH A 425 1555 1555 2.63 CISPEP 1 VAL A 144 MET A 145 0 -13.08 SITE 1 AC1 4 ASP A 267 GLU A 269 ATP A 510 ACT A1209 SITE 1 AC2 3 ASN A 254 ASP A 267 ATP A 510 SITE 1 AC3 6 GLN A 74 GLY A 375 GLU A 377 HOH A 397 SITE 2 AC3 6 HOH A 421 HOH A 438 SITE 1 AC4 3 MG A 1 ASP A 249 GLU A 269 SITE 1 AC5 3 GLY A 106 THR A 109 HOH A 425 SITE 1 AC6 9 PHE A 90 THR A 92 TYR A 93 ARG A 94 SITE 2 AC6 9 GLN A 98 TRP A 205 GLU A 269 HOH A 391 SITE 3 AC6 9 HOH A 532 SITE 1 AC7 20 MG A 1 HOH A 17 THR A 58 VAL A 77 SITE 2 AC7 20 ARG A 79 PRO A 114 MET A 133 ASP A 134 SITE 3 AC7 20 TYR A 135 VAL A 136 VAL A 140 ASN A 254 SITE 4 AC7 20 LEU A 256 LEU A 266 ASP A 267 GLU A 269 SITE 5 AC7 20 MG A 379 HOH A 449 HOH A 485 HOH A 566 CRYST1 55.876 62.104 103.265 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017897 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009684 0.00000