HEADER METAL BINDING PROTEIN 04-APR-11 3AXF TITLE PERRHENATE BINDING TO A11C/R153C MODA MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDATE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12 KEYWDS MOLYBDATE BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.HE,B.P.ARYAL,P.BRUGAROLAS REVDAT 2 13-NOV-24 3AXF 1 REMARK SEQADV REVDAT 1 01-FEB-12 3AXF 0 JRNL AUTH B.P.ARYAL,P.BRUGAROLAS,C.HE JRNL TITL BINDING OF REO(4) (-) WITH AN ENGINEERED MOO (4) JRNL TITL 2 (2-)-BINDING PROTEIN: TOWARDS A NEW APPROACH IN JRNL TITL 3 RADIOPHARMACEUTICAL APPLICATIONS. JRNL REF J.BIOL.INORG.CHEM. V. 17 97 2012 JRNL REFN ISSN 0949-8257 JRNL PMID 21861186 JRNL DOI 10.1007/S00775-011-0833-4 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3173 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5217 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.675 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5465 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7447 ; 1.916 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 720 ; 6.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;32.642 ;25.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 912 ;19.039 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.733 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 858 ; 0.163 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4103 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3528 ; 1.002 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5679 ; 1.612 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1937 ; 2.696 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1763 ; 3.974 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5465 ; 2.062 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 146 ; 9.999 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5346 ; 2.859 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 233 4 REMARK 3 1 B 3 B 233 4 REMARK 3 1 C 3 C 233 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1652 ; 0.49 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1652 ; 0.52 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1652 ; 0.58 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1652 ; 1.53 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1652 ; 1.92 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1652 ; 1.62 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): -35.9576 -22.6598 14.2365 REMARK 3 T TENSOR REMARK 3 T11: 0.0623 T22: 0.2029 REMARK 3 T33: 0.1178 T12: -0.0344 REMARK 3 T13: -0.0278 T23: 0.1144 REMARK 3 L TENSOR REMARK 3 L11: 1.5781 L22: 0.5825 REMARK 3 L33: 2.7290 L12: 0.5320 REMARK 3 L13: -0.5064 L23: -0.5751 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: 0.4469 S13: 0.2119 REMARK 3 S21: -0.0398 S22: 0.2369 S23: 0.0167 REMARK 3 S31: 0.0272 S32: -0.4661 S33: -0.1935 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 233 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6241 -18.2495 35.2858 REMARK 3 T TENSOR REMARK 3 T11: 0.0505 T22: 0.0300 REMARK 3 T33: 0.0643 T12: -0.0073 REMARK 3 T13: -0.0026 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.6979 L22: 1.2295 REMARK 3 L33: 0.9101 L12: -0.0177 REMARK 3 L13: 0.1444 L23: 0.1014 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: -0.0207 S13: 0.0202 REMARK 3 S21: -0.0571 S22: 0.0682 S23: -0.0112 REMARK 3 S31: -0.0593 S32: 0.0814 S33: -0.0353 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 233 REMARK 3 ORIGIN FOR THE GROUP (A): -32.8358 -55.9617 13.9107 REMARK 3 T TENSOR REMARK 3 T11: 0.6555 T22: 0.5464 REMARK 3 T33: 0.2912 T12: -0.1338 REMARK 3 T13: 0.0611 T23: -0.1701 REMARK 3 L TENSOR REMARK 3 L11: 2.7942 L22: 0.7975 REMARK 3 L33: 2.9074 L12: 0.3516 REMARK 3 L13: -2.4458 L23: -0.7543 REMARK 3 S TENSOR REMARK 3 S11: -0.4458 S12: 0.5692 S13: -0.0235 REMARK 3 S21: -0.4354 S22: 0.2856 S23: -0.0754 REMARK 3 S31: 0.7110 S32: -0.4777 S33: 0.1602 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: (1) DATA WAS COLLECTED TO THE HIGHER REMARK 3 RESOLUTION OF 1.5 A. HOWEVER, DATA BELOW 2.0 A HAD LOW REMARK 3 COMPLETENESS (LESS THAN 55%), AND THE SIGNAL-TO-NOISE RATIO I/ REMARK 3 SIGMA(I) WAS SIGNIFICANTLY LOW (LESS THAN 1.5). THEREFORE THE REMARK 3 DATA WAS SCALED TO 2.0 A. (2) HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 3AXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000029815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 77.2 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43585 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 56.4 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 39.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG8000, 0.1 M SODIUM ACETATE, 2.5 REMARK 280 MM SODIUM PERRHENATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.37550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.51650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.72900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.51650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.37550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.72900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 ASP B 1 REMARK 465 GLU B 2 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 ASP C 1 REMARK 465 GLU C 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 11 CB CYS A 11 SG -0.371 REMARK 500 LYS A 96 CE LYS A 96 NZ 0.164 REMARK 500 ALA B 37 CA ALA B 37 CB 0.133 REMARK 500 GLU B 188 CG GLU B 188 CD 0.107 REMARK 500 GLU B 188 CD GLU B 188 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU B 115 CB - CG - CD2 ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 122 -34.99 -152.32 REMARK 500 HIS A 122 -22.31 -159.43 REMARK 500 ALA B 37 -178.36 -174.41 REMARK 500 HIS B 122 -21.15 -159.18 REMARK 500 ALA C 10 135.24 -26.52 REMARK 500 ALA C 10 134.38 -26.52 REMARK 500 SER C 12 -5.76 -59.87 REMARK 500 SER C 12 -5.76 -58.16 REMARK 500 VAL C 33 44.05 -145.17 REMARK 500 VAL C 33 43.47 -145.17 REMARK 500 SER C 38 146.29 -38.35 REMARK 500 PRO C 51 34.22 -63.42 REMARK 500 ASP C 97 157.79 -40.14 REMARK 500 ASP C 119 107.65 -39.29 REMARK 500 ALA C 184 147.97 -171.15 REMARK 500 ASN C 205 42.31 96.11 REMARK 500 ASN C 205 22.33 116.19 REMARK 500 ASN C 206 -174.16 -65.57 REMARK 500 ASN C 206 -174.16 -66.37 REMARK 500 ILE C 224 -73.15 -80.92 REMARK 500 PHE C 225 -37.41 -38.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 232 LYS A 233 -149.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE REO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE REO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE REO C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R26 RELATED DB: PDB REMARK 900 PERRHENATE BINDING TO MOLYBDATE BINDING PROTEIN DBREF 3AXF A 1 233 UNP P37329 MODA_ECOLI 25 257 DBREF 3AXF B 1 233 UNP P37329 MODA_ECOLI 25 257 DBREF 3AXF C 1 233 UNP P37329 MODA_ECOLI 25 257 SEQADV 3AXF GLY A -3 UNP P37329 EXPRESSION TAG SEQADV 3AXF SER A -2 UNP P37329 EXPRESSION TAG SEQADV 3AXF HIS A -1 UNP P37329 EXPRESSION TAG SEQADV 3AXF MET A 0 UNP P37329 EXPRESSION TAG SEQADV 3AXF CYS A 11 UNP P37329 ALA 35 ENGINEERED MUTATION SEQADV 3AXF CYS A 153 UNP P37329 ARG 177 ENGINEERED MUTATION SEQADV 3AXF GLY B -3 UNP P37329 EXPRESSION TAG SEQADV 3AXF SER B -2 UNP P37329 EXPRESSION TAG SEQADV 3AXF HIS B -1 UNP P37329 EXPRESSION TAG SEQADV 3AXF MET B 0 UNP P37329 EXPRESSION TAG SEQADV 3AXF CYS B 11 UNP P37329 ALA 35 ENGINEERED MUTATION SEQADV 3AXF CYS B 153 UNP P37329 ARG 177 ENGINEERED MUTATION SEQADV 3AXF GLY C -3 UNP P37329 EXPRESSION TAG SEQADV 3AXF SER C -2 UNP P37329 EXPRESSION TAG SEQADV 3AXF HIS C -1 UNP P37329 EXPRESSION TAG SEQADV 3AXF MET C 0 UNP P37329 EXPRESSION TAG SEQADV 3AXF CYS C 11 UNP P37329 ALA 35 ENGINEERED MUTATION SEQADV 3AXF CYS C 153 UNP P37329 ARG 177 ENGINEERED MUTATION SEQRES 1 A 237 GLY SER HIS MET ASP GLU GLY LYS ILE THR VAL PHE ALA SEQRES 2 A 237 ALA CYS SER LEU THR ASN ALA MET GLN ASP ILE ALA THR SEQRES 3 A 237 GLN PHE LYS LYS GLU LYS GLY VAL ASP VAL VAL SER SER SEQRES 4 A 237 PHE ALA SER SER SER THR LEU ALA ARG GLN ILE GLU ALA SEQRES 5 A 237 GLY ALA PRO ALA ASP LEU PHE ILE SER ALA ASP GLN LYS SEQRES 6 A 237 TRP MET ASP TYR ALA VAL ASP LYS LYS ALA ILE ASP THR SEQRES 7 A 237 ALA THR ARG GLN THR LEU LEU GLY ASN SER LEU VAL VAL SEQRES 8 A 237 VAL ALA PRO LYS ALA SER VAL GLN LYS ASP PHE THR ILE SEQRES 9 A 237 ASP SER LYS THR ASN TRP THR SER LEU LEU ASN GLY GLY SEQRES 10 A 237 ARG LEU ALA VAL GLY ASP PRO GLU HIS VAL PRO ALA GLY SEQRES 11 A 237 ILE TYR ALA LYS GLU ALA LEU GLN LYS LEU GLY ALA TRP SEQRES 12 A 237 ASP THR LEU SER PRO LYS LEU ALA PRO ALA GLU ASP VAL SEQRES 13 A 237 CYS GLY ALA LEU ALA LEU VAL GLU ARG ASN GLU ALA PRO SEQRES 14 A 237 LEU GLY ILE VAL TYR GLY SER ASP ALA VAL ALA SER LYS SEQRES 15 A 237 GLY VAL LYS VAL VAL ALA THR PHE PRO GLU ASP SER HIS SEQRES 16 A 237 LYS LYS VAL GLU TYR PRO VAL ALA VAL VAL GLU GLY HIS SEQRES 17 A 237 ASN ASN ALA THR VAL LYS ALA PHE TYR ASP TYR LEU LYS SEQRES 18 A 237 GLY PRO GLN ALA ALA GLU ILE PHE LYS ARG TYR GLY PHE SEQRES 19 A 237 THR ILE LYS SEQRES 1 B 237 GLY SER HIS MET ASP GLU GLY LYS ILE THR VAL PHE ALA SEQRES 2 B 237 ALA CYS SER LEU THR ASN ALA MET GLN ASP ILE ALA THR SEQRES 3 B 237 GLN PHE LYS LYS GLU LYS GLY VAL ASP VAL VAL SER SER SEQRES 4 B 237 PHE ALA SER SER SER THR LEU ALA ARG GLN ILE GLU ALA SEQRES 5 B 237 GLY ALA PRO ALA ASP LEU PHE ILE SER ALA ASP GLN LYS SEQRES 6 B 237 TRP MET ASP TYR ALA VAL ASP LYS LYS ALA ILE ASP THR SEQRES 7 B 237 ALA THR ARG GLN THR LEU LEU GLY ASN SER LEU VAL VAL SEQRES 8 B 237 VAL ALA PRO LYS ALA SER VAL GLN LYS ASP PHE THR ILE SEQRES 9 B 237 ASP SER LYS THR ASN TRP THR SER LEU LEU ASN GLY GLY SEQRES 10 B 237 ARG LEU ALA VAL GLY ASP PRO GLU HIS VAL PRO ALA GLY SEQRES 11 B 237 ILE TYR ALA LYS GLU ALA LEU GLN LYS LEU GLY ALA TRP SEQRES 12 B 237 ASP THR LEU SER PRO LYS LEU ALA PRO ALA GLU ASP VAL SEQRES 13 B 237 CYS GLY ALA LEU ALA LEU VAL GLU ARG ASN GLU ALA PRO SEQRES 14 B 237 LEU GLY ILE VAL TYR GLY SER ASP ALA VAL ALA SER LYS SEQRES 15 B 237 GLY VAL LYS VAL VAL ALA THR PHE PRO GLU ASP SER HIS SEQRES 16 B 237 LYS LYS VAL GLU TYR PRO VAL ALA VAL VAL GLU GLY HIS SEQRES 17 B 237 ASN ASN ALA THR VAL LYS ALA PHE TYR ASP TYR LEU LYS SEQRES 18 B 237 GLY PRO GLN ALA ALA GLU ILE PHE LYS ARG TYR GLY PHE SEQRES 19 B 237 THR ILE LYS SEQRES 1 C 237 GLY SER HIS MET ASP GLU GLY LYS ILE THR VAL PHE ALA SEQRES 2 C 237 ALA CYS SER LEU THR ASN ALA MET GLN ASP ILE ALA THR SEQRES 3 C 237 GLN PHE LYS LYS GLU LYS GLY VAL ASP VAL VAL SER SER SEQRES 4 C 237 PHE ALA SER SER SER THR LEU ALA ARG GLN ILE GLU ALA SEQRES 5 C 237 GLY ALA PRO ALA ASP LEU PHE ILE SER ALA ASP GLN LYS SEQRES 6 C 237 TRP MET ASP TYR ALA VAL ASP LYS LYS ALA ILE ASP THR SEQRES 7 C 237 ALA THR ARG GLN THR LEU LEU GLY ASN SER LEU VAL VAL SEQRES 8 C 237 VAL ALA PRO LYS ALA SER VAL GLN LYS ASP PHE THR ILE SEQRES 9 C 237 ASP SER LYS THR ASN TRP THR SER LEU LEU ASN GLY GLY SEQRES 10 C 237 ARG LEU ALA VAL GLY ASP PRO GLU HIS VAL PRO ALA GLY SEQRES 11 C 237 ILE TYR ALA LYS GLU ALA LEU GLN LYS LEU GLY ALA TRP SEQRES 12 C 237 ASP THR LEU SER PRO LYS LEU ALA PRO ALA GLU ASP VAL SEQRES 13 C 237 CYS GLY ALA LEU ALA LEU VAL GLU ARG ASN GLU ALA PRO SEQRES 14 C 237 LEU GLY ILE VAL TYR GLY SER ASP ALA VAL ALA SER LYS SEQRES 15 C 237 GLY VAL LYS VAL VAL ALA THR PHE PRO GLU ASP SER HIS SEQRES 16 C 237 LYS LYS VAL GLU TYR PRO VAL ALA VAL VAL GLU GLY HIS SEQRES 17 C 237 ASN ASN ALA THR VAL LYS ALA PHE TYR ASP TYR LEU LYS SEQRES 18 C 237 GLY PRO GLN ALA ALA GLU ILE PHE LYS ARG TYR GLY PHE SEQRES 19 C 237 THR ILE LYS HET REO A 301 5 HET REO B 301 5 HET REO C 301 5 HETNAM REO PERRHENATE FORMUL 4 REO 3(O4 RE 1-) FORMUL 7 HOH *146(H2 O) HELIX 1 1 LEU A 13 GLY A 29 1 17 HELIX 2 2 SER A 38 ALA A 48 1 11 HELIX 3 3 ASP A 59 LYS A 69 1 11 HELIX 4 4 ASP A 73 ARG A 77 5 5 HELIX 5 5 ASN A 105 ASN A 111 1 7 HELIX 6 6 VAL A 123 GLY A 137 1 15 HELIX 7 7 ALA A 138 SER A 143 1 6 HELIX 8 8 ASP A 151 ARG A 161 1 11 HELIX 9 9 GLY A 171 ALA A 176 1 6 HELIX 10 10 PRO A 187 HIS A 191 5 5 HELIX 11 11 ASN A 206 LEU A 216 1 11 HELIX 12 12 GLY A 218 TYR A 228 1 11 HELIX 13 13 LEU B 13 GLY B 29 1 17 HELIX 14 14 SER B 38 GLY B 49 1 12 HELIX 15 15 ASP B 59 LYS B 69 1 11 HELIX 16 16 ASP B 73 ARG B 77 5 5 HELIX 17 17 ASN B 105 ASN B 111 1 7 HELIX 18 18 VAL B 123 LEU B 136 1 14 HELIX 19 19 ALA B 138 SER B 143 1 6 HELIX 20 20 ASP B 151 ARG B 161 1 11 HELIX 21 21 GLY B 171 SER B 177 1 7 HELIX 22 22 PRO B 187 HIS B 191 5 5 HELIX 23 23 ASN B 206 LYS B 217 1 12 HELIX 24 24 GLY B 218 TYR B 228 1 11 HELIX 25 25 LEU C 13 LYS C 28 1 16 HELIX 26 26 SER C 38 GLY C 49 1 12 HELIX 27 27 GLN C 60 LYS C 69 1 10 HELIX 28 28 ASP C 73 ARG C 77 5 5 HELIX 29 29 ASN C 105 ASN C 111 1 7 HELIX 30 30 VAL C 123 LEU C 136 1 14 HELIX 31 31 ALA C 138 SER C 143 1 6 HELIX 32 32 ASP C 151 ARG C 161 1 11 HELIX 33 33 GLY C 171 SER C 177 1 7 HELIX 34 34 PRO C 187 HIS C 191 5 5 HELIX 35 35 ASN C 206 LYS C 217 1 12 HELIX 36 36 GLY C 218 LYS C 226 1 9 SHEET 1 A 6 ASP A 31 ALA A 37 0 SHEET 2 A 6 LYS A 4 ALA A 10 1 N ILE A 5 O VAL A 33 SHEET 3 A 6 LEU A 54 ILE A 56 1 O LEU A 54 N PHE A 8 SHEET 4 A 6 VAL A 194 VAL A 200 -1 O ALA A 199 N PHE A 55 SHEET 5 A 6 GLN A 78 ASN A 83 -1 N GLN A 78 O VAL A 198 SHEET 6 A 6 THR A 231 ILE A 232 -1 O THR A 231 N GLY A 82 SHEET 1 B 5 LEU A 146 ALA A 149 0 SHEET 2 B 5 LEU A 115 GLY A 118 1 N LEU A 115 O ALA A 147 SHEET 3 B 5 LEU A 166 TYR A 170 1 O LEU A 166 N ALA A 116 SHEET 4 B 5 LEU A 85 PRO A 90 -1 N VAL A 86 O VAL A 169 SHEET 5 B 5 VAL A 180 THR A 185 -1 O VAL A 183 N VAL A 87 SHEET 1 C 6 ASP B 31 ALA B 37 0 SHEET 2 C 6 LYS B 4 ALA B 10 1 N ILE B 5 O ASP B 31 SHEET 3 C 6 LEU B 54 ILE B 56 1 O ILE B 56 N PHE B 8 SHEET 4 C 6 VAL B 194 VAL B 200 -1 O ALA B 199 N PHE B 55 SHEET 5 C 6 GLN B 78 ASN B 83 -1 N GLN B 78 O VAL B 198 SHEET 6 C 6 THR B 231 ILE B 232 -1 O THR B 231 N GLY B 82 SHEET 1 D 5 LEU B 146 ALA B 149 0 SHEET 2 D 5 LEU B 115 GLY B 118 1 N LEU B 115 O ALA B 147 SHEET 3 D 5 LEU B 166 TYR B 170 1 O LEU B 166 N ALA B 116 SHEET 4 D 5 LEU B 85 PRO B 90 -1 N VAL B 86 O VAL B 169 SHEET 5 D 5 VAL B 180 THR B 185 -1 O ALA B 184 N VAL B 87 SHEET 1 E 2 LYS C 4 ILE C 5 0 SHEET 2 E 2 ASP C 31 VAL C 32 1 O ASP C 31 N ILE C 5 SHEET 1 F 6 SER C 35 PHE C 36 0 SHEET 2 F 6 VAL C 7 ALA C 9 1 N ALA C 9 O SER C 35 SHEET 3 F 6 LEU C 54 ILE C 56 1 O LEU C 54 N PHE C 8 SHEET 4 F 6 VAL C 194 VAL C 200 -1 O ALA C 199 N PHE C 55 SHEET 5 F 6 GLN C 78 ASN C 83 -1 N GLN C 78 O VAL C 198 SHEET 6 F 6 THR C 231 ILE C 232 -1 O THR C 231 N GLY C 82 SHEET 1 G 5 LEU C 146 ALA C 149 0 SHEET 2 G 5 LEU C 115 GLY C 118 1 N LEU C 115 O ALA C 147 SHEET 3 G 5 LEU C 166 TYR C 170 1 O LEU C 166 N ALA C 116 SHEET 4 G 5 LEU C 85 PRO C 90 -1 N VAL C 86 O VAL C 169 SHEET 5 G 5 VAL C 180 THR C 185 -1 O VAL C 183 N VAL C 87 SSBOND 1 CYS A 11 CYS A 153 1555 1555 2.16 SSBOND 2 CYS B 11 CYS B 153 1555 1555 2.25 SITE 1 AC1 10 ALA A 10 CYS A 11 SER A 12 SER A 39 SITE 2 AC1 10 ALA A 58 PRO A 124 ALA A 125 ASP A 151 SITE 3 AC1 10 VAL A 152 TYR A 170 SITE 1 AC2 12 ALA B 10 CYS B 11 SER B 12 SER B 38 SITE 2 AC2 12 SER B 39 ALA B 58 VAL B 123 PRO B 124 SITE 3 AC2 12 ALA B 125 ASP B 151 VAL B 152 TYR B 170 SITE 1 AC3 11 ALA C 10 CYS C 11 SER C 12 SER C 38 SITE 2 AC3 11 SER C 39 VAL C 123 PRO C 124 ALA C 125 SITE 3 AC3 11 ASP C 151 VAL C 152 TYR C 170 CRYST1 52.751 77.458 163.033 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018957 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006134 0.00000