HEADER IMMUNE SYSTEM 11-APR-11 3AXL TITLE MURINE VALPHA 10 VBETA 8.1 T-CELL RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: VALPHA 10; COMPND 3 CHAIN: A, G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VBETA 8.1; COMPND 7 CHAIN: B, H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-30 KEYWDS IMMUNOGLOBULIN FOLD, T-CELL RECEPTOR, CD1D BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR O.PATEL,J.ROSSJOHN REVDAT 1 03-AUG-11 3AXL 0 JRNL AUTH A.P.ULDRICH,O.PATEL,G.CAMERON,D.G.PELLICCI,E.B.DAY, JRNL AUTH 2 L.C.SULLIVAN,K.KYPARISSOUDIS,L.KJER-NIELSEN,J.P.VIVIAN, JRNL AUTH 3 B.CAO,A.G.BROOKS,S.J.WILLIAMS,P.ILLARIONOV,G.S.BESRA, JRNL AUTH 4 S.J.TURNER,S.A.PORCELLI,J.MCCLUSKEY,M.J.SMYTH,J.ROSSJOHN, JRNL AUTH 5 D.I.GODFREY JRNL TITL A SEMI-INVARIANT V(ALPHA)10(+) T CELL ANTIGEN RECEPTOR JRNL TITL 2 DEFINES A POPULATION OF NATURAL KILLER T CELLS WITH DISTINCT JRNL TITL 3 GLYCOLIPID ANTIGEN-RECOGNITION PROPERTIES JRNL REF NAT.IMMUNOL. V. 12 616 2011 JRNL REFN ISSN 1529-2908 JRNL PMID 21666690 JRNL DOI 10.1038/NI.2051 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 20217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.258 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.327 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9500 - 5.5442 0.98 2882 162 0.2582 0.3025 REMARK 3 2 5.5442 - 4.4020 0.99 2799 167 0.2206 0.2700 REMARK 3 3 4.4020 - 3.8460 0.98 2785 153 0.2324 0.3326 REMARK 3 4 3.8460 - 3.4945 0.98 2800 137 0.2582 0.3538 REMARK 3 5 3.4945 - 3.2441 0.97 2733 132 0.2745 0.3514 REMARK 3 6 3.2441 - 3.0529 0.94 2673 143 0.2863 0.3903 REMARK 3 7 3.0529 - 2.9000 0.90 2516 135 0.2952 0.3593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 31.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.08640 REMARK 3 B22 (A**2) : 5.90530 REMARK 3 B33 (A**2) : -6.42440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.45060 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 6971 REMARK 3 ANGLE : 1.680 9189 REMARK 3 CHIRALITY : 0.117 1009 REMARK 3 PLANARITY : 0.009 1200 REMARK 3 DIHEDRAL : 16.597 2403 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain B and (resseq 3:240 ) REMARK 3 SELECTION : chain H and (resseq 3:240 ) REMARK 3 ATOM PAIRS NUMBER : 1883 REMARK 3 RMSD : 0.071 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain A and (resseq 3:48 or resseq 54:64 REMARK 3 or resseq 70:124 or resseq 132:200 ) REMARK 3 SELECTION : chain G and (resseq 3:48 or resseq 54:64 REMARK 3 or resseq 70:124 or resseq 132:200 ) REMARK 3 ATOM PAIRS NUMBER : 1393 REMARK 3 RMSD : 0.065 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB029821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20901 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M NAI, 0.1M BIS-TRIS- REMARK 280 PROPANE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.42050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.90050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.42050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.90050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 56 REMARK 465 PRO A 57 REMARK 465 SER A 58 REMARK 465 TRP A 59 REMARK 465 ALA A 60 REMARK 465 SER A 84A REMARK 465 ASN A 84B REMARK 465 GLU A 84C REMARK 465 SER A 143 REMARK 465 LYS A 144 REMARK 465 SER A 145 REMARK 465 SER A 146 REMARK 465 ASP A 147 REMARK 465 LYS A 148 REMARK 465 SER A 149 REMARK 465 TRP G 59 REMARK 465 ALA G 60 REMARK 465 SER G 143 REMARK 465 LYS G 144 REMARK 465 SER G 145 REMARK 465 SER G 146 REMARK 465 ASP G 147 REMARK 465 LYS G 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 GLN A 62 CG CD OE1 NE2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 197 CG OD1 REMARK 470 ASP B 198 CG OD1 OD2 REMARK 470 SER B 199 OG REMARK 470 GLU G 61 CG CD OE1 OE2 REMARK 470 GLN G 62 CG CD OE1 NE2 REMARK 470 ARG G 63 CG CD NE CZ NH1 NH2 REMARK 470 GLU G 84C CG CD OE1 OE2 REMARK 470 LEU H 196 CG CD1 CD2 REMARK 470 ASN H 197 CG OD1 REMARK 470 ASP H 198 CB CG OD1 OD2 REMARK 470 SER H 199 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 166 O LYS G 166 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 29 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 PRO B 8 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 LEU G 29 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 27 -160.43 -100.46 REMARK 500 ASN A 30 -53.07 -130.19 REMARK 500 SER A 93 58.61 34.54 REMARK 500 SER A 182 -72.34 -46.45 REMARK 500 MET A 183 30.35 -95.86 REMARK 500 ASP A 184 73.72 35.91 REMARK 500 PRO A 211 136.22 -36.91 REMARK 500 ASP B 45 148.48 -171.29 REMARK 500 ARG B 80 77.53 -115.92 REMARK 500 TYR B 114 -153.98 -118.40 REMARK 500 ASP B 166 47.59 -83.45 REMARK 500 LEU B 196 -168.83 -117.16 REMARK 500 ASP B 198 43.01 39.46 REMARK 500 THR B 245 127.33 -39.56 REMARK 500 ARG B 255 136.57 -175.97 REMARK 500 THR G 27 -162.24 -102.41 REMARK 500 ASN G 30 -54.66 -131.39 REMARK 500 SER G 85 75.71 -65.79 REMARK 500 SER G 93 61.35 34.63 REMARK 500 MET G 183 30.08 -96.80 REMARK 500 ASP G 184 73.13 35.46 REMARK 500 PRO G 211 135.13 -33.11 REMARK 500 ASP G 213 43.66 -108.26 REMARK 500 ARG H 80 77.61 -117.54 REMARK 500 TYR H 114 -160.82 -111.69 REMARK 500 ASP H 166 46.35 -82.48 REMARK 500 LEU H 196 -169.94 -109.81 REMARK 500 ASP H 198 42.85 38.38 REMARK 500 THR H 245 123.49 -36.19 REMARK 500 ARG H 255 138.94 -173.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 7 PRO B 8 62.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP H 60 23.8 L L OUTSIDE RANGE REMARK 500 GLU H 84 24.2 L L OUTSIDE RANGE REMARK 500 ALA H 195 23.9 L L OUTSIDE RANGE REMARK 500 ARG H 240 18.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 3AXL A 3 218 PDB 3AXL 3AXL 3 218 DBREF 3AXL G 3 218 PDB 3AXL 3AXL 3 218 DBREF 3AXL B 3 256 PDB 3AXL 3AXL 3 256 DBREF 3AXL H 3 256 PDB 3AXL 3AXL 3 256 SEQRES 1 A 198 GLN VAL GLU GLN SER PRO ALA SER LEU VAL LEU GLN GLU SEQRES 2 A 198 GLY GLU ASN ALA GLU LEU GLN CYS THR TYR SER THR THR SEQRES 3 A 198 LEU ASN SER MET GLN TRP PHE TYR GLN ARG PRO GLY GLY SEQRES 4 A 198 ARG LEU VAL SER LEU LEU TYR SER PRO SER TRP ALA GLU SEQRES 5 A 198 GLN ARG GLY GLY ARG LEU THR SER SER ALA ALA SER ASN SEQRES 6 A 198 GLU SER ARG SER SER LEU HIS ILE SER SER SER GLN ILE SEQRES 7 A 198 THR ASP SER GLY THR TYR LEU CYS ALA ILE ALA SER SER SEQRES 8 A 198 SER PHE SER LYS LEU VAL PHE GLY GLN GLY THR SER LEU SEQRES 9 A 198 SER VAL VAL PRO ASN ILE GLN ASN PRO ASP PRO ALA VAL SEQRES 10 A 198 TYR GLN LEU ARG ASP SER LYS SER SER ASP LYS SER VAL SEQRES 11 A 198 CYS LEU PHE THR ASP PHE ASP SER GLN THR ASN VAL SER SEQRES 12 A 198 GLN SER LYS ASP SER ASP VAL TYR ILE THR ASP LYS CYS SEQRES 13 A 198 VAL LEU ASP MET ARG SER MET ASP PHE LYS SER ASN SER SEQRES 14 A 198 ALA VAL ALA TRP SER ASN LYS SER ASP PHE ALA CYS ALA SEQRES 15 A 198 ASN ALA PHE ASN ASN SER ILE ILE PRO GLU ASP THR PHE SEQRES 16 A 198 PHE PRO SER SEQRES 1 B 238 ALA VAL THR GLN SER PRO ARG SER LYS VAL ALA VAL THR SEQRES 2 B 238 GLY GLY LYS VAL THR LEU SER CYS HIS GLN THR ASN ASN SEQRES 3 B 238 HIS ASP TYR MET TYR TRP TYR ARG GLN ASP THR GLY HIS SEQRES 4 B 238 GLY LEU ARG LEU ILE HIS TYR SER TYR VAL ALA ASP SER SEQRES 5 B 238 THR GLU LYS GLY ASP ILE PRO ASP GLY TYR LYS ALA SER SEQRES 6 B 238 ARG PRO SER GLN GLU ASN PHE SER LEU ILE LEU GLU LEU SEQRES 7 B 238 ALA SER LEU SER GLN THR ALA VAL TYR PHE CYS ALA SER SEQRES 8 B 238 ARG LEU GLY GLY TYR GLU GLN TYR PHE GLY PRO GLY THR SEQRES 9 B 238 ARG LEU THR VAL LEU GLU ASP LEU LYS ASN VAL PHE PRO SEQRES 10 B 238 PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU ILE SEQRES 11 B 238 SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA THR SEQRES 12 B 238 GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP VAL SEQRES 13 B 238 ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP PRO SEQRES 14 B 238 GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER ARG SEQRES 15 B 238 TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA THR PHE SEQRES 16 B 238 TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL GLN SEQRES 17 B 238 PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN ASP SEQRES 18 B 238 ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU ALA SEQRES 19 B 238 TRP GLY ARG ALA SEQRES 1 G 198 GLN VAL GLU GLN SER PRO ALA SER LEU VAL LEU GLN GLU SEQRES 2 G 198 GLY GLU ASN ALA GLU LEU GLN CYS THR TYR SER THR THR SEQRES 3 G 198 LEU ASN SER MET GLN TRP PHE TYR GLN ARG PRO GLY GLY SEQRES 4 G 198 ARG LEU VAL SER LEU LEU TYR SER PRO SER TRP ALA GLU SEQRES 5 G 198 GLN ARG GLY GLY ARG LEU THR SER SER ALA ALA SER ASN SEQRES 6 G 198 GLU SER ARG SER SER LEU HIS ILE SER SER SER GLN ILE SEQRES 7 G 198 THR ASP SER GLY THR TYR LEU CYS ALA ILE ALA SER SER SEQRES 8 G 198 SER PHE SER LYS LEU VAL PHE GLY GLN GLY THR SER LEU SEQRES 9 G 198 SER VAL VAL PRO ASN ILE GLN ASN PRO ASP PRO ALA VAL SEQRES 10 G 198 TYR GLN LEU ARG ASP SER LYS SER SER ASP LYS SER VAL SEQRES 11 G 198 CYS LEU PHE THR ASP PHE ASP SER GLN THR ASN VAL SER SEQRES 12 G 198 GLN SER LYS ASP SER ASP VAL TYR ILE THR ASP LYS CYS SEQRES 13 G 198 VAL LEU ASP MET ARG SER MET ASP PHE LYS SER ASN SER SEQRES 14 G 198 ALA VAL ALA TRP SER ASN LYS SER ASP PHE ALA CYS ALA SEQRES 15 G 198 ASN ALA PHE ASN ASN SER ILE ILE PRO GLU ASP THR PHE SEQRES 16 G 198 PHE PRO SER SEQRES 1 H 238 ALA VAL THR GLN SER PRO ARG SER LYS VAL ALA VAL THR SEQRES 2 H 238 GLY GLY LYS VAL THR LEU SER CYS HIS GLN THR ASN ASN SEQRES 3 H 238 HIS ASP TYR MET TYR TRP TYR ARG GLN ASP THR GLY HIS SEQRES 4 H 238 GLY LEU ARG LEU ILE HIS TYR SER TYR VAL ALA ASP SER SEQRES 5 H 238 THR GLU LYS GLY ASP ILE PRO ASP GLY TYR LYS ALA SER SEQRES 6 H 238 ARG PRO SER GLN GLU ASN PHE SER LEU ILE LEU GLU LEU SEQRES 7 H 238 ALA SER LEU SER GLN THR ALA VAL TYR PHE CYS ALA SER SEQRES 8 H 238 ARG LEU GLY GLY TYR GLU GLN TYR PHE GLY PRO GLY THR SEQRES 9 H 238 ARG LEU THR VAL LEU GLU ASP LEU LYS ASN VAL PHE PRO SEQRES 10 H 238 PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU ILE SEQRES 11 H 238 SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA THR SEQRES 12 H 238 GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP VAL SEQRES 13 H 238 ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP PRO SEQRES 14 H 238 GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER ARG SEQRES 15 H 238 TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA THR PHE SEQRES 16 H 238 TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL GLN SEQRES 17 H 238 PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN ASP SEQRES 18 H 238 ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU ALA SEQRES 19 H 238 TRP GLY ARG ALA FORMUL 5 HOH *128(H2 O) HELIX 1 1 GLN A 95 SER A 99 5 5 HELIX 2 2 SER B 95 THR B 99 5 5 HELIX 3 3 ASP B 129 VAL B 133 5 5 HELIX 4 4 SER B 144 GLN B 152 1 9 HELIX 5 5 ALA B 211 GLN B 215 1 5 HELIX 6 6 GLN G 95 SER G 99 5 5 HELIX 7 7 SER H 95 THR H 99 5 5 HELIX 8 8 ASP H 129 VAL H 133 5 5 HELIX 9 9 SER H 144 GLN H 152 1 9 HELIX 10 10 ALA H 211 GLN H 215 1 5 SHEET 1 A 5 VAL A 4 SER A 7 0 SHEET 2 A 5 ALA A 19 TYR A 25 -1 O GLN A 22 N SER A 7 SHEET 3 A 5 ARG A 86 ILE A 91 -1 O SER A 87 N CYS A 23 SHEET 4 A 5 LEU A 72 SER A 82 -1 N THR A 80 O HIS A 90 SHEET 5 A 5 GLN A 62 ARG A 63 -1 N ARG A 63 O LEU A 72 SHEET 1 B10 VAL A 51 LEU A 54 0 SHEET 2 B10 SER A 31 GLN A 44 -1 N TRP A 41 O LEU A 53 SHEET 3 B10 GLY A 100 ALA A 107 -1 O ALA A 105 N GLN A 40 SHEET 4 B10 THR A 122 VAL A 127 -1 O THR A 122 N TYR A 102 SHEET 5 B10 SER A 10 GLN A 14 1 N LEU A 13 O VAL A 127 SHEET 6 B10 SER G 10 GLN G 14 -1 O SER G 10 N VAL A 12 SHEET 7 B10 THR G 122 VAL G 127 1 O VAL G 127 N LEU G 13 SHEET 8 B10 GLY G 100 ALA G 107 -1 N GLY G 100 O LEU G 124 SHEET 9 B10 SER G 31 GLN G 44 -1 N GLN G 40 O ALA G 105 SHEET 10 B10 VAL G 51 PRO G 57 -1 O VAL G 51 N TYR G 43 SHEET 1 C 8 VAL A 117 PHE A 118 0 SHEET 2 C 8 GLY A 100 ALA A 107 -1 N ILE A 106 O VAL A 117 SHEET 3 C 8 THR A 122 VAL A 127 -1 O THR A 122 N TYR A 102 SHEET 4 C 8 SER A 10 GLN A 14 1 N LEU A 13 O VAL A 127 SHEET 5 C 8 SER G 10 GLN G 14 -1 O SER G 10 N VAL A 12 SHEET 6 C 8 THR G 122 VAL G 127 1 O VAL G 127 N LEU G 13 SHEET 7 C 8 GLY G 100 ALA G 107 -1 N GLY G 100 O LEU G 124 SHEET 8 C 8 VAL G 117 PHE G 118 -1 O VAL G 117 N ILE G 106 SHEET 1 D 4 ALA A 136 GLN A 139 0 SHEET 2 D 4 CYS A 151 THR A 154 -1 O THR A 154 N ALA A 136 SHEET 3 D 4 PHE A 185 TRP A 193 -1 O ALA A 192 N CYS A 151 SHEET 4 D 4 TYR A 171 ILE A 172 -1 N TYR A 171 O TRP A 193 SHEET 1 E 4 ALA A 136 GLN A 139 0 SHEET 2 E 4 CYS A 151 THR A 154 -1 O THR A 154 N ALA A 136 SHEET 3 E 4 PHE A 185 TRP A 193 -1 O ALA A 192 N CYS A 151 SHEET 4 E 4 CYS A 176 MET A 180 -1 N MET A 180 O PHE A 185 SHEET 1 F 4 THR B 5 SER B 7 0 SHEET 2 F 4 VAL B 19 HIS B 24 -1 O HIS B 24 N THR B 5 SHEET 3 F 4 ASN B 85 LEU B 91 -1 O LEU B 88 N LEU B 21 SHEET 4 F 4 LYS B 76 SER B 78 -1 N SER B 78 O SER B 87 SHEET 1 G 6 SER B 10 VAL B 14 0 SHEET 2 G 6 THR B 122 LEU B 127 1 O LEU B 127 N ALA B 13 SHEET 3 G 6 ALA B 100 ARG B 107 -1 N TYR B 102 O THR B 122 SHEET 4 G 6 TYR B 31 GLN B 44 -1 N TYR B 42 O PHE B 103 SHEET 5 G 6 LEU B 50 SER B 56 -1 O ILE B 53 N TRP B 41 SHEET 6 G 6 GLU B 63 LYS B 64 -1 O GLU B 63 N TYR B 55 SHEET 1 H 4 SER B 10 VAL B 14 0 SHEET 2 H 4 THR B 122 LEU B 127 1 O LEU B 127 N ALA B 13 SHEET 3 H 4 ALA B 100 ARG B 107 -1 N TYR B 102 O THR B 122 SHEET 4 H 4 GLN B 116 PHE B 118 -1 O TYR B 117 N SER B 106 SHEET 1 I 4 GLU B 137 PHE B 141 0 SHEET 2 I 4 LYS B 153 PHE B 163 -1 O THR B 161 N GLU B 137 SHEET 3 I 4 TYR B 201 SER B 210 -1 O TYR B 201 N PHE B 163 SHEET 4 I 4 VAL B 183 THR B 185 -1 N CYS B 184 O ARG B 206 SHEET 1 J 4 GLU B 137 PHE B 141 0 SHEET 2 J 4 LYS B 153 PHE B 163 -1 O THR B 161 N GLU B 137 SHEET 3 J 4 TYR B 201 SER B 210 -1 O TYR B 201 N PHE B 163 SHEET 4 J 4 LEU B 190 LYS B 191 -1 N LEU B 190 O ALA B 202 SHEET 1 K 4 LYS B 177 VAL B 179 0 SHEET 2 K 4 VAL B 168 VAL B 174 -1 N VAL B 174 O LYS B 177 SHEET 3 K 4 HIS B 220 PHE B 227 -1 O GLN B 224 N SER B 171 SHEET 4 K 4 GLN B 246 TRP B 253 -1 O ALA B 252 N PHE B 221 SHEET 1 L 5 VAL G 4 SER G 7 0 SHEET 2 L 5 ALA G 19 TYR G 25 -1 O GLN G 22 N SER G 7 SHEET 3 L 5 SER G 85 ILE G 91 -1 O SER G 87 N CYS G 23 SHEET 4 L 5 LEU G 72 SER G 82 -1 N THR G 80 O HIS G 90 SHEET 5 L 5 GLN G 62 ARG G 63 -1 N ARG G 63 O LEU G 72 SHEET 1 M 4 ALA G 136 LEU G 140 0 SHEET 2 M 4 VAL G 150 THR G 154 -1 O VAL G 150 N LEU G 140 SHEET 3 M 4 PHE G 185 TRP G 193 -1 O ALA G 192 N CYS G 151 SHEET 4 M 4 TYR G 171 ILE G 172 -1 N TYR G 171 O TRP G 193 SHEET 1 N 4 ALA G 136 LEU G 140 0 SHEET 2 N 4 VAL G 150 THR G 154 -1 O VAL G 150 N LEU G 140 SHEET 3 N 4 PHE G 185 TRP G 193 -1 O ALA G 192 N CYS G 151 SHEET 4 N 4 CYS G 176 MET G 180 -1 N MET G 180 O PHE G 185 SHEET 1 O 4 THR H 5 SER H 7 0 SHEET 2 O 4 VAL H 19 HIS H 24 -1 O HIS H 24 N THR H 5 SHEET 3 O 4 ASN H 85 LEU H 91 -1 O LEU H 91 N VAL H 19 SHEET 4 O 4 LYS H 76 SER H 78 -1 N SER H 78 O SER H 87 SHEET 1 P 6 SER H 10 VAL H 14 0 SHEET 2 P 6 THR H 122 LEU H 127 1 O THR H 125 N LYS H 11 SHEET 3 P 6 ALA H 100 ARG H 107 -1 N TYR H 102 O THR H 122 SHEET 4 P 6 TYR H 31 GLN H 44 -1 N TYR H 42 O PHE H 103 SHEET 5 P 6 LEU H 50 SER H 56 -1 O ILE H 53 N TRP H 41 SHEET 6 P 6 GLU H 63 LYS H 64 -1 O GLU H 63 N TYR H 55 SHEET 1 Q 4 SER H 10 VAL H 14 0 SHEET 2 Q 4 THR H 122 LEU H 127 1 O THR H 125 N LYS H 11 SHEET 3 Q 4 ALA H 100 ARG H 107 -1 N TYR H 102 O THR H 122 SHEET 4 Q 4 GLN H 116 PHE H 118 -1 O TYR H 117 N SER H 106 SHEET 1 R 4 GLU H 137 PHE H 141 0 SHEET 2 R 4 LYS H 153 PHE H 163 -1 O THR H 161 N GLU H 137 SHEET 3 R 4 TYR H 201 SER H 210 -1 O LEU H 203 N ALA H 160 SHEET 4 R 4 VAL H 183 THR H 185 -1 N CYS H 184 O ARG H 206 SHEET 1 S 4 GLU H 137 PHE H 141 0 SHEET 2 S 4 LYS H 153 PHE H 163 -1 O THR H 161 N GLU H 137 SHEET 3 S 4 TYR H 201 SER H 210 -1 O LEU H 203 N ALA H 160 SHEET 4 S 4 LEU H 190 LYS H 191 -1 N LEU H 190 O ALA H 202 SHEET 1 T 4 LYS H 177 GLU H 178 0 SHEET 2 T 4 VAL H 168 VAL H 174 -1 N VAL H 174 O LYS H 177 SHEET 3 T 4 HIS H 220 PHE H 227 -1 O GLN H 224 N SER H 171 SHEET 4 T 4 GLN H 246 TRP H 253 -1 O ALA H 252 N PHE H 221 SSBOND 1 CYS A 23 CYS A 104 1555 1555 2.02 SSBOND 2 CYS A 151 CYS A 201 1555 1555 2.03 SSBOND 3 CYS A 176 CYS B 184 1555 1555 2.05 SSBOND 4 CYS B 23 CYS B 104 1555 1555 2.03 SSBOND 5 CYS B 158 CYS B 223 1555 1555 2.05 SSBOND 6 CYS G 23 CYS G 104 1555 1555 2.04 SSBOND 7 CYS G 151 CYS G 201 1555 1555 2.04 SSBOND 8 CYS G 176 CYS H 184 1555 1555 2.04 SSBOND 9 CYS H 23 CYS H 104 1555 1555 2.03 SSBOND 10 CYS H 158 CYS H 223 1555 1555 2.04 CISPEP 1 SER A 7 PRO A 8 0 2.37 CISPEP 2 THR B 46 GLY B 47 0 -6.82 CISPEP 3 TYR B 164 PRO B 165 0 -4.21 CISPEP 4 SER G 7 PRO G 8 0 0.76 CISPEP 5 SER G 84A ASN G 84B 0 9.21 CISPEP 6 SER H 7 PRO H 8 0 -6.34 CISPEP 7 THR H 46 GLY H 47 0 -5.96 CISPEP 8 TYR H 164 PRO H 165 0 -0.61 CRYST1 148.841 65.801 97.375 90.00 97.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006719 0.000000 0.000841 0.00000 SCALE2 0.000000 0.015197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010350 0.00000