HEADER CHAPERONE 03-MAY-11 3AY9 TITLE CRYSTAL STRUCTURE OF HUMAN HSP70 NBD IN THE ADP-, MG ION-, AND K ION- TITLE 2 BOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK 70 KDA PROTEIN 1A/1B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEOTIDE-BINDING DOMAIN (UNP RESIDUES 1-388); COMPND 5 SYNONYM: HEAT SHOCK 70 KDA PROTEIN 1/2, HSP70-1/HSP70-2, COMPND 6 HSP70.1/HSP70.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSP70, HSPA1, HSPA1A, HSPA1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32 KEYWDS STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 2 RSGI, ATPASE, ADP BINDING, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR A.ARAKAWA,N.HANDA,M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 01-NOV-23 3AY9 1 REMARK SEQADV LINK REVDAT 1 28-DEC-11 3AY9 0 JRNL AUTH A.ARAKAWA,N.HANDA,M.SHIROUZU,S.YOKOYAMA JRNL TITL BIOCHEMICAL AND STRUCTURAL STUDIES ON THE HIGH AFFINITY OF JRNL TITL 2 HSP70 FOR ADP. JRNL REF PROTEIN SCI. V. 20 1367 2011 JRNL REFN ISSN 0961-8368 JRNL PMID 21608060 JRNL DOI 10.1002/PRO.663 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 36093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1914 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2354 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2938 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98000 REMARK 3 B22 (A**2) : 3.37000 REMARK 3 B33 (A**2) : -2.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.290 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3020 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4088 ; 1.412 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 5.363 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;36.032 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;13.203 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.491 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2272 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1374 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2106 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.200 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1878 ; 0.793 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3023 ; 1.475 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1153 ; 2.508 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1065 ; 4.198 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 3AY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000029845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36093 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 6.218 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1349 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.601 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3ATU REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M CALCIUM CHLORIDE, 0.1M BIS-TRIS REMARK 280 (PH6.5), 30% PEG MME 550, PH 5.7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.86650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.32500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.67150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.32500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.86650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.67150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 PHE A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 383 REMARK 465 LYS A 384 REMARK 465 SER A 385 REMARK 465 GLU A 386 REMARK 465 ASN A 387 REMARK 465 VAL A 388 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A6267 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 TYR A 15 O 126.3 REMARK 620 3 HOH A 480 O 66.8 112.7 REMARK 620 4 HOH A 482 O 66.7 162.3 58.4 REMARK 620 5 HOH A 485 O 98.9 90.5 156.7 99.6 REMARK 620 6 ADP A1452 O2B 119.1 98.7 58.3 63.6 121.7 REMARK 620 7 ADP A1452 O3A 152.5 81.1 106.7 87.0 77.1 48.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A6269 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 227 O REMARK 620 2 ASP A 232 OD1 112.8 REMARK 620 3 ASP A 232 OD2 75.1 52.8 REMARK 620 4 HOH A 505 O 88.1 119.9 83.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A6266 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 480 O REMARK 620 2 HOH A 482 O 85.6 REMARK 620 3 HOH A 486 O 86.0 91.0 REMARK 620 4 HOH A 488 O 173.4 88.1 92.1 REMARK 620 5 ADP A1452 O2B 84.6 79.9 167.4 96.3 REMARK 620 6 PO4 A6265 O1 98.1 176.3 89.2 88.2 100.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 6265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 6266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 6267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 6268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 6269 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E88 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE NUCLEOTIDE-FREE STATE REMARK 900 RELATED ID: 2E8A RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE AMPPNP-BOUND STATE REMARK 900 RELATED ID: 3A8Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH THE BAG5 BD5 REMARK 900 RELATED ID: 3ATU RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE ADP-, MG ION-, AND NA ION-BOUND STATE REMARK 900 RELATED ID: 3ATV RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE ADP-BOUND STATE DBREF 3AY9 A 1 388 UNP P08107 HSP71_HUMAN 1 388 SEQADV 3AY9 GLY A -3 UNP P08107 EXPRESSION TAG SEQADV 3AY9 SER A -2 UNP P08107 EXPRESSION TAG SEQADV 3AY9 PHE A -1 UNP P08107 EXPRESSION TAG SEQADV 3AY9 THR A 0 UNP P08107 EXPRESSION TAG SEQRES 1 A 392 GLY SER PHE THR MET ALA LYS ALA ALA ALA ILE GLY ILE SEQRES 2 A 392 ASP LEU GLY THR THR TYR SER CYS VAL GLY VAL PHE GLN SEQRES 3 A 392 HIS GLY LYS VAL GLU ILE ILE ALA ASN ASP GLN GLY ASN SEQRES 4 A 392 ARG THR THR PRO SER TYR VAL ALA PHE THR ASP THR GLU SEQRES 5 A 392 ARG LEU ILE GLY ASP ALA ALA LYS ASN GLN VAL ALA LEU SEQRES 6 A 392 ASN PRO GLN ASN THR VAL PHE ASP ALA LYS ARG LEU ILE SEQRES 7 A 392 GLY ARG LYS PHE GLY ASP PRO VAL VAL GLN SER ASP MET SEQRES 8 A 392 LYS HIS TRP PRO PHE GLN VAL ILE ASN ASP GLY ASP LYS SEQRES 9 A 392 PRO LYS VAL GLN VAL SER TYR LYS GLY GLU THR LYS ALA SEQRES 10 A 392 PHE TYR PRO GLU GLU ILE SER SER MET VAL LEU THR LYS SEQRES 11 A 392 MET LYS GLU ILE ALA GLU ALA TYR LEU GLY TYR PRO VAL SEQRES 12 A 392 THR ASN ALA VAL ILE THR VAL PRO ALA TYR PHE ASN ASP SEQRES 13 A 392 SER GLN ARG GLN ALA THR LYS ASP ALA GLY VAL ILE ALA SEQRES 14 A 392 GLY LEU ASN VAL LEU ARG ILE ILE ASN GLU PRO THR ALA SEQRES 15 A 392 ALA ALA ILE ALA TYR GLY LEU ASP ARG THR GLY LYS GLY SEQRES 16 A 392 GLU ARG ASN VAL LEU ILE PHE ASP LEU GLY GLY GLY THR SEQRES 17 A 392 PHE ASP VAL SER ILE LEU THR ILE ASP ASP GLY ILE PHE SEQRES 18 A 392 GLU VAL LYS ALA THR ALA GLY ASP THR HIS LEU GLY GLY SEQRES 19 A 392 GLU ASP PHE ASP ASN ARG LEU VAL ASN HIS PHE VAL GLU SEQRES 20 A 392 GLU PHE LYS ARG LYS HIS LYS LYS ASP ILE SER GLN ASN SEQRES 21 A 392 LYS ARG ALA VAL ARG ARG LEU ARG THR ALA CYS GLU ARG SEQRES 22 A 392 ALA LYS ARG THR LEU SER SER SER THR GLN ALA SER LEU SEQRES 23 A 392 GLU ILE ASP SER LEU PHE GLU GLY ILE ASP PHE TYR THR SEQRES 24 A 392 SER ILE THR ARG ALA ARG PHE GLU GLU LEU CYS SER ASP SEQRES 25 A 392 LEU PHE ARG SER THR LEU GLU PRO VAL GLU LYS ALA LEU SEQRES 26 A 392 ARG ASP ALA LYS LEU ASP LYS ALA GLN ILE HIS ASP LEU SEQRES 27 A 392 VAL LEU VAL GLY GLY SER THR ARG ILE PRO LYS VAL GLN SEQRES 28 A 392 LYS LEU LEU GLN ASP PHE PHE ASN GLY ARG ASP LEU ASN SEQRES 29 A 392 LYS SER ILE ASN PRO ASP GLU ALA VAL ALA TYR GLY ALA SEQRES 30 A 392 ALA VAL GLN ALA ALA ILE LEU MET GLY ASP LYS SER GLU SEQRES 31 A 392 ASN VAL HET ADP A1452 27 HET PO4 A6265 5 HET MG A6266 1 HET K A6267 1 HET CL A6268 1 HET CA A6269 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 PO4 O4 P 3- FORMUL 4 MG MG 2+ FORMUL 5 K K 1+ FORMUL 6 CL CL 1- FORMUL 7 CA CA 2+ FORMUL 8 HOH *266(H2 O) HELIX 1 1 GLY A 52 GLN A 58 1 7 HELIX 2 2 ASN A 62 GLN A 64 5 3 HELIX 3 3 ASP A 69 LEU A 73 5 5 HELIX 4 4 ASP A 80 LYS A 88 1 9 HELIX 5 5 TYR A 115 GLY A 136 1 22 HELIX 6 6 ASN A 151 ALA A 165 1 15 HELIX 7 7 GLU A 175 TYR A 183 1 9 HELIX 8 8 GLY A 229 LYS A 250 1 22 HELIX 9 9 ASN A 256 SER A 275 1 20 HELIX 10 10 ARG A 299 SER A 312 1 14 HELIX 11 11 THR A 313 ALA A 324 1 12 HELIX 12 12 ASP A 327 ILE A 331 5 5 HELIX 13 13 GLY A 338 ARG A 342 5 5 HELIX 14 14 ILE A 343 PHE A 354 1 12 HELIX 15 15 ASN A 364 ASP A 366 5 3 HELIX 16 16 GLU A 367 GLY A 382 1 16 SHEET 1 A 3 LYS A 25 ILE A 28 0 SHEET 2 A 3 TYR A 15 GLN A 22 -1 N VAL A 20 O GLU A 27 SHEET 3 A 3 THR A 38 PRO A 39 -1 O THR A 38 N SER A 16 SHEET 1 B 5 LYS A 25 ILE A 28 0 SHEET 2 B 5 TYR A 15 GLN A 22 -1 N VAL A 20 O GLU A 27 SHEET 3 B 5 ILE A 7 ASP A 10 -1 N ASP A 10 O CYS A 17 SHEET 4 B 5 ASN A 141 VAL A 146 1 O VAL A 143 N ILE A 9 SHEET 5 B 5 ASN A 168 ASN A 174 1 O LEU A 170 N ALA A 142 SHEET 1 C 3 ARG A 49 ILE A 51 0 SHEET 2 C 3 VAL A 42 PHE A 44 -1 N ALA A 43 O LEU A 50 SHEET 3 C 3 THR A 66 VAL A 67 -1 O VAL A 67 N VAL A 42 SHEET 1 D 3 GLN A 93 ASP A 97 0 SHEET 2 D 3 LYS A 100 TYR A 107 -1 O LYS A 102 N ILE A 95 SHEET 3 D 3 GLU A 110 PHE A 114 -1 O LYS A 112 N VAL A 105 SHEET 1 E 4 ILE A 216 ASP A 225 0 SHEET 2 E 4 PHE A 205 ASP A 213 -1 N PHE A 205 O ASP A 225 SHEET 3 E 4 ARG A 193 LEU A 200 -1 N ILE A 197 O SER A 208 SHEET 4 E 4 ASP A 333 VAL A 337 1 O VAL A 335 N LEU A 196 SHEET 1 F 2 GLN A 279 PHE A 288 0 SHEET 2 F 2 ILE A 291 THR A 298 -1 O PHE A 293 N ILE A 284 LINK OD2 ASP A 10 K K A6267 1555 1555 2.59 LINK O TYR A 15 K K A6267 1555 1555 2.69 LINK O HIS A 227 CA CA A6269 1555 1555 2.65 LINK OD1 ASP A 232 CA CA A6269 1555 1555 2.36 LINK OD2 ASP A 232 CA CA A6269 1555 1555 2.57 LINK O HOH A 480 MG MG A6266 1555 1555 2.11 LINK O HOH A 480 K K A6267 1555 1555 3.18 LINK O HOH A 482 MG MG A6266 1555 1555 2.16 LINK O HOH A 482 K K A6267 1555 1555 2.70 LINK O HOH A 485 K K A6267 1555 1555 2.54 LINK O HOH A 486 MG MG A6266 1555 1555 2.22 LINK O HOH A 488 MG MG A6266 1555 1555 2.14 LINK O HOH A 505 CA CA A6269 1555 1555 2.58 LINK O2B ADP A1452 MG MG A6266 1555 1555 2.08 LINK O2B ADP A1452 K K A6267 1555 1555 2.45 LINK O3A ADP A1452 K K A6267 1555 1555 3.34 LINK O1 PO4 A6265 MG MG A6266 1555 1555 2.10 SITE 1 AC1 26 THR A 13 THR A 14 TYR A 15 GLY A 201 SITE 2 AC1 26 GLY A 202 GLY A 230 GLU A 268 LYS A 271 SITE 3 AC1 26 ARG A 272 SER A 275 GLY A 338 GLY A 339 SITE 4 AC1 26 SER A 340 ARG A 342 ILE A 343 ASP A 366 SITE 5 AC1 26 HOH A 402 HOH A 480 HOH A 482 HOH A 485 SITE 6 AC1 26 HOH A 489 HOH A 491 HOH A 502 PO4 A6265 SITE 7 AC1 26 MG A6266 K A6267 SITE 1 AC2 13 GLY A 12 THR A 13 LYS A 71 GLU A 175 SITE 2 AC2 13 THR A 204 HOH A 480 HOH A 486 HOH A 488 SITE 3 AC2 13 HOH A 489 HOH A 490 HOH A 563 ADP A1452 SITE 4 AC2 13 MG A6266 SITE 1 AC3 7 HOH A 480 HOH A 482 HOH A 486 HOH A 488 SITE 2 AC3 7 ADP A1452 PO4 A6265 K A6267 SITE 1 AC4 6 ASP A 10 TYR A 15 HOH A 482 HOH A 485 SITE 2 AC4 6 ADP A1452 MG A6266 SITE 1 AC5 3 TYR A 183 LYS A 345 LYS A 348 SITE 1 AC6 3 HIS A 227 ASP A 232 HOH A 505 CRYST1 45.733 61.343 142.650 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021866 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007010 0.00000