HEADER HYDROLASE 16-MAY-11 3AYR TITLE GH5 ENDOGLUCANASE EGLA FROM A RUMINAL FUNGUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGLUCANASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PIROMYCES RHIZINFLATUS; SOURCE 3 ORGANISM_TAXID: 73428; SOURCE 4 GENE: EGLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET46 EK/LIC KEYWDS TIM BARREL, HYDROLASE, CARBOHYDRATE/SUGAR BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.-W.TSENG,T.-P.KO,R.-T.GUO,J.-R.LIU REVDAT 3 01-NOV-23 3AYR 1 SEQADV REVDAT 2 11-APR-12 3AYR 1 JRNL REVDAT 1 02-NOV-11 3AYR 0 JRNL AUTH C.-W.TSENG,T.-P.KO,R.-T.GUO,J.-W.HUANG,H.-C.WANG,C.-H.HUANG, JRNL AUTH 2 Y.-S.CHENG,A.H.-J.WANG,J.-R.LIU JRNL TITL SUBSTRATE BINDING OF A GH5 ENDOGLUCANASE FROM THE RUMINAL JRNL TITL 2 FUNGUS PIROMYCES RHIZINFLATA. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1189 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 22102024 JRNL DOI 10.1107/S1744309111032428 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 29845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1594 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2107 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2971 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.929 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3051 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4138 ; 2.126 ; 1.921 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 365 ; 7.172 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;38.263 ;25.210 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;16.175 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;12.455 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 425 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2396 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1818 ; 1.494 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2926 ; 2.415 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1233 ; 3.807 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1212 ; 5.659 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8444 34.2050 -1.8860 REMARK 3 T TENSOR REMARK 3 T11: 0.0135 T22: 0.3138 REMARK 3 T33: 0.1648 T12: -0.0092 REMARK 3 T13: -0.0047 T23: 0.2077 REMARK 3 L TENSOR REMARK 3 L11: 1.8125 L22: 1.0439 REMARK 3 L33: 1.5332 L12: -0.5539 REMARK 3 L13: 0.3553 L23: -0.2416 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: -0.4208 S13: -0.4331 REMARK 3 S21: 0.0128 S22: 0.1255 S23: 0.0804 REMARK 3 S31: 0.0035 S32: -0.3088 S33: -0.1759 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AYR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000029862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : RH COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31439 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 39.50 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 54.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 42.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1EDG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M SODIUM CITRATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.02833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 150.05667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.54250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 187.57083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.51417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.02833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 150.05667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 187.57083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 112.54250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.51417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 41.69800 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 72.22305 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -37.51417 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 521 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 GLU A 359 REMARK 465 THR A 360 REMARK 465 GLU A 361 REMARK 465 GLU A 362 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 518 O HOH A 519 1.68 REMARK 500 O HOH A 517 O HOH A 519 1.99 REMARK 500 O HOH A 404 O HOH A 513 2.11 REMARK 500 O HOH A 497 O HOH A 498 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 220 O HOH A 512 8565 2.07 REMARK 500 O HOH A 505 O HOH A 505 10664 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 144 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 222 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 246 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET A 274 CG - SD - CE ANGL. DEV. = -10.6 DEGREES REMARK 500 ASP A 289 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 290 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 MET A 304 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 322 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 -77.54 -84.86 REMARK 500 THR A 22 -95.15 -135.01 REMARK 500 ASP A 36 94.92 -161.03 REMARK 500 ASN A 63 16.35 -142.26 REMARK 500 ASN A 108 -169.82 -125.85 REMARK 500 HIS A 110 -94.45 -107.82 REMARK 500 ASP A 144 -164.97 -79.96 REMARK 500 ASN A 153 -87.03 -98.14 REMARK 500 ALA A 204 12.38 54.94 REMARK 500 LEU A 238 -29.39 -140.26 REMARK 500 ASP A 249 -168.15 -107.29 REMARK 500 ASN A 286 46.29 -142.91 REMARK 500 LEU A 325 -43.20 -130.48 REMARK 500 TYR A 335 75.64 -119.28 REMARK 500 ASN A 351 97.83 -169.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EDG RELATED DB: PDB REMARK 900 RELATED ID: 3AYS RELATED DB: PDB DBREF 3AYR A 1 362 UNP Q9URH5 Q9URH5_9FUNG 1 362 SEQADV 3AYR MET A -13 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR ALA A -12 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR HIS A -11 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR HIS A -10 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR HIS A -9 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR HIS A -8 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR HIS A -7 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR HIS A -6 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR VAL A -5 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR ASP A -4 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR ASP A -3 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR ASP A -2 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR ASP A -1 UNP Q9URH5 EXPRESSION TAG SEQADV 3AYR LYS A 0 UNP Q9URH5 EXPRESSION TAG SEQRES 1 A 376 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 376 LYS ILE ARG ASP ILE SER SER LYS GLU LEU ILE LYS GLU SEQRES 3 A 376 MET ASN PHE GLY TRP ASN LEU GLY ASN THR MET ASP ALA SEQRES 4 A 376 GLN CYS ILE GLU TYR LEU ASN TYR GLU LYS ASP GLN THR SEQRES 5 A 376 ALA SER GLU THR CYS TRP GLY ASN PRO LYS THR THR GLU SEQRES 6 A 376 ASP MET PHE LYS VAL LEU ILE ASP ASN GLN PHE ASN VAL SEQRES 7 A 376 PHE ARG ILE PRO THR THR TRP SER GLY HIS PHE GLY GLU SEQRES 8 A 376 ALA PRO ASP TYR LYS ILE ASP GLU LYS TRP LEU LYS ARG SEQRES 9 A 376 VAL HIS GLU VAL VAL ASP TYR PRO TYR LYS ASN GLY ALA SEQRES 10 A 376 PHE VAL ILE LEU ASN LEU HIS HIS GLU THR TRP ASN HIS SEQRES 11 A 376 ALA PHE SER GLU THR LEU ASP THR ALA LYS GLU ILE LEU SEQRES 12 A 376 GLU LYS ILE TRP SER GLN ILE ALA GLU GLU PHE LYS ASP SEQRES 13 A 376 TYR ASP GLU HIS LEU ILE PHE GLU GLY LEU ASN GLU PRO SEQRES 14 A 376 ARG LYS ASN ASP THR PRO VAL GLU TRP THR GLY GLY ASP SEQRES 15 A 376 GLN GLU GLY TRP ASP ALA VAL ASN ALA MET ASN ALA VAL SEQRES 16 A 376 PHE LEU LYS THR VAL ARG SER ALA GLY GLY ASN ASN PRO SEQRES 17 A 376 LYS ARG HIS LEU MET ILE PRO PRO TYR ALA ALA ALA CYS SEQRES 18 A 376 ASN GLU ASN SER PHE ASN ASN PHE ILE PHE PRO GLU ASP SEQRES 19 A 376 ASP ASP LYS VAL ILE ALA SER VAL HIS ALA TYR ALA PRO SEQRES 20 A 376 TYR ASN PHE ALA LEU ASN ASN GLY GLU GLY ALA VAL ASP SEQRES 21 A 376 LYS PHE ASP ALA ALA GLY LYS ARG ASP LEU GLU TRP ASN SEQRES 22 A 376 ILE ASN LEU MET LYS LYS ARG PHE VAL ASP GLN GLY ILE SEQRES 23 A 376 PRO MET ILE LEU GLY GLU TYR GLY ALA MET ASN ARG ASP SEQRES 24 A 376 ASN GLU GLU ASP ARG ALA THR TRP ALA GLU PHE TYR MET SEQRES 25 A 376 GLU LYS VAL THR ALA MET GLY VAL PRO GLN ILE TRP TRP SEQRES 26 A 376 ASP ASN GLY VAL PHE GLU GLY THR GLY GLU ARG PHE GLY SEQRES 27 A 376 LEU LEU ASP ARG LYS ASN LEU LYS ILE VAL TYR PRO THR SEQRES 28 A 376 ILE VAL ALA ALA LEU GLN LYS GLY ARG GLY LEU GLU VAL SEQRES 29 A 376 ASN VAL VAL HIS ALA ILE GLU LYS GLU THR GLU GLU FORMUL 2 HOH *231(H2 O) HELIX 1 1 SER A 5 ILE A 10 1 6 HELIX 2 2 LYS A 11 MET A 13 5 3 HELIX 3 3 ASN A 32 ASP A 36 5 5 HELIX 4 4 THR A 38 CYS A 43 5 6 HELIX 5 5 THR A 50 ASN A 60 1 11 HELIX 6 6 ASP A 84 LYS A 100 1 17 HELIX 7 7 THR A 121 PHE A 140 1 20 HELIX 8 8 ASP A 168 SER A 188 1 21 HELIX 9 9 ASN A 192 ARG A 196 5 5 HELIX 10 10 PRO A 202 ALA A 206 5 5 HELIX 11 11 ASN A 208 ASN A 214 1 7 HELIX 12 12 PRO A 233 LEU A 238 1 6 HELIX 13 13 ASP A 249 PHE A 267 1 19 HELIX 14 14 VAL A 268 GLY A 271 5 4 HELIX 15 15 ASN A 286 ALA A 303 1 18 HELIX 16 16 TYR A 335 GLY A 347 1 13 SHEET 1 A 9 GLY A 16 LEU A 19 0 SHEET 2 A 9 VAL A 64 ILE A 67 1 O ARG A 66 N LEU A 19 SHEET 3 A 9 PHE A 104 ASN A 108 1 O ILE A 106 N ILE A 67 SHEET 4 A 9 LEU A 147 GLU A 150 1 O ILE A 148 N VAL A 105 SHEET 5 A 9 LEU A 198 ILE A 200 1 O MET A 199 N PHE A 149 SHEET 6 A 9 VAL A 224 HIS A 229 1 O SER A 227 N ILE A 200 SHEET 7 A 9 MET A 274 TYR A 279 1 O ILE A 275 N ALA A 226 SHEET 8 A 9 GLN A 308 ASP A 312 1 O TRP A 311 N TYR A 279 SHEET 9 A 9 GLY A 16 LEU A 19 1 N GLY A 16 O TRP A 310 SHEET 1 B 2 LEU A 326 ASP A 327 0 SHEET 2 B 2 LYS A 332 ILE A 333 -1 O LYS A 332 N ASP A 327 SSBOND 1 CYS A 27 CYS A 43 1555 1555 2.12 CISPEP 1 ALA A 78 PRO A 79 0 -0.40 CISPEP 2 ALA A 232 PRO A 233 0 -7.07 CRYST1 83.396 83.396 225.085 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011991 0.006923 0.000000 0.00000 SCALE2 0.000000 0.013846 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004443 0.00000