HEADER OXIDOREDUCTASE/PROTEIN BINDING 04-JUL-11 3B1J TITLE CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE TITLE 2 COMPLEXED WITH CP12 IN THE PRESENCE OF COPPER FROM SYNECHOCOCCUS TITLE 3 ELONGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (NADP+); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+) COMPND 5 (PHOSPHORYLATING); COMPND 6 EC: 1.2.1.13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CP12; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: UNP RESIDUES 51-75; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 1140; SOURCE 4 STRAIN: PCC 7942; SOURCE 5 GENE: GAP2, SYNPCC7942_1742; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 10 ORGANISM_TAXID: 1140; SOURCE 11 STRAIN: PCC 7942; SOURCE 12 GENE: CP12, SYNPCC7942_0361; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA FOLD, OXIDOREDUCTASE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.MATSUMURA,A.KAI,T.INOUE REVDAT 4 23-OCT-24 3B1J 1 REMARK REVDAT 3 01-NOV-23 3B1J 1 REMARK LINK REVDAT 2 12-JUN-13 3B1J 1 TITLE REVDAT 1 11-JAN-12 3B1J 0 JRNL AUTH H.MATSUMURA,A.KAI,T.MAEDA,M.TAMOI,A.SATOH,H.TAMURA,M.HIROSE, JRNL AUTH 2 T.OGAWA,N.KIZU,A.WADANO,T.INOUE,S.SHIGEOKA JRNL TITL STRUCTURE BASIS FOR THE REGULATION OF JRNL TITL 2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE ACTIVITY VIA THE JRNL TITL 3 INTRINSICALLY DISORDERED PROTEIN CP12. JRNL REF STRUCTURE V. 19 1846 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 22153507 JRNL DOI 10.1016/J.STR.2011.08.016 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 42064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2102 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5549 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3B1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000029961. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42240 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.187 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 3D2I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(V/V) PEG3350, 0.2M MAGNESIUM REMARK 280 ACETATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.43800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.43800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.99950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.80150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.99950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.80150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.43800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.99950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.80150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.43800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.99950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.80150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -209.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -73.43800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 339 REMARK 465 ALA B 339 REMARK 465 SER C 51 REMARK 465 GLU C 52 REMARK 465 THR C 53 REMARK 465 SER D 51 REMARK 465 GLU D 52 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE B 208 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 10 54.49 -93.90 REMARK 500 ASN A 57 88.25 -69.70 REMARK 500 GLU A 64 -39.23 -34.78 REMARK 500 CYS A 78 60.07 -150.24 REMARK 500 PRO A 86 45.89 -76.57 REMARK 500 THR A 122 49.20 -89.29 REMARK 500 ASN A 138 18.77 -154.38 REMARK 500 ALA A 153 -158.74 60.76 REMARK 500 LYS A 175 177.07 167.04 REMARK 500 ASP A 192 107.95 -49.80 REMARK 500 ALA A 203 104.63 -45.36 REMARK 500 PRO A 238 63.49 -62.56 REMARK 500 VAL A 242 124.93 81.14 REMARK 500 THR A 270 -98.68 -125.59 REMARK 500 ASP A 306 52.20 73.75 REMARK 500 GLU A 319 -65.19 -91.74 REMARK 500 PHE B 10 55.03 -95.83 REMARK 500 PHE B 22 -9.39 -52.19 REMARK 500 GLN B 25 -79.00 -52.42 REMARK 500 GLU B 64 -17.63 -46.02 REMARK 500 ASN B 65 47.31 -168.28 REMARK 500 PRO B 86 32.89 -70.50 REMARK 500 ASN B 138 17.00 -149.02 REMARK 500 ALA B 153 -170.71 59.67 REMARK 500 LEU B 186 -4.64 -57.21 REMARK 500 ALA B 203 111.35 -39.85 REMARK 500 PRO B 224 -39.43 -38.43 REMARK 500 PRO B 238 58.45 -65.54 REMARK 500 VAL B 242 127.95 82.26 REMARK 500 THR B 270 -98.73 -117.83 REMARK 500 TRP B 337 -172.84 -63.01 REMARK 500 PRO D 55 3.74 -63.42 REMARK 500 PHE D 56 -53.12 -160.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 341 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 155 SG REMARK 620 2 THR A 156 N 94.6 REMARK 620 3 THR A 156 OG1 131.5 67.9 REMARK 620 4 ASP C 75 O 158.1 106.1 54.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 341 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 155 SG REMARK 620 2 THR B 156 N 111.3 REMARK 620 3 THR B 156 OG1 155.2 74.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 341 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B1K RELATED DB: PDB DBREF 3B1J A 1 339 UNP Q9R6W2 Q9R6W2_SYNE7 1 339 DBREF 3B1J B 1 339 UNP Q9R6W2 Q9R6W2_SYNE7 1 339 DBREF 3B1J C 51 75 UNP Q6BBK3 Q6BBK3_SYNE7 51 75 DBREF 3B1J D 51 75 UNP Q6BBK3 Q6BBK3_SYNE7 51 75 SEQRES 1 A 339 MET THR ILE ARG VAL ALA ILE ASN GLY PHE GLY ARG ILE SEQRES 2 A 339 GLY ARG ASN PHE LEU ARG CYS TRP PHE GLY ARG GLN ASN SEQRES 3 A 339 THR ASP LEU GLU VAL VAL ALA ILE ASN ASN THR SER ASP SEQRES 4 A 339 ALA ARG THR ALA ALA HIS LEU LEU GLU TYR ASP SER VAL SEQRES 5 A 339 LEU GLY ARG PHE ASN ALA ASP ILE SER TYR ASP GLU ASN SEQRES 6 A 339 SER ILE THR VAL ASN GLY LYS THR MET LYS ILE VAL CYS SEQRES 7 A 339 ASP ARG ASN PRO LEU ASN LEU PRO TRP LYS GLU TRP ASP SEQRES 8 A 339 ILE ASP LEU VAL ILE GLU SER THR GLY VAL PHE VAL THR SEQRES 9 A 339 ALA GLU GLY ALA SER LYS HIS ILE GLN ALA GLY ALA LYS SEQRES 10 A 339 LYS VAL LEU ILE THR ALA PRO GLY LYS GLY GLU GLY VAL SEQRES 11 A 339 GLY THR TYR VAL ILE GLY VAL ASN ASP SER GLU TYR ARG SEQRES 12 A 339 HIS GLU ASP PHE ALA VAL ILE SER ASN ALA SER CYS THR SEQRES 13 A 339 THR ASN CYS LEU ALA PRO VAL ALA LYS VAL LEU HIS ASP SEQRES 14 A 339 ASN PHE GLY ILE ILE LYS GLY THR MET THR THR THR HIS SEQRES 15 A 339 SER TYR THR LEU ASP GLN ARG ILE LEU ASP ALA SER HIS SEQRES 16 A 339 ARG ASP LEU ARG ARG ALA ARG ALA ALA ALA VAL ASN ILE SEQRES 17 A 339 VAL PRO THR THR THR GLY ALA ALA LYS ALA VAL ALA LEU SEQRES 18 A 339 VAL ILE PRO GLU LEU LYS GLY LYS LEU ASN GLY ILE ALA SEQRES 19 A 339 LEU ARG VAL PRO THR PRO ASN VAL SER VAL VAL ASP LEU SEQRES 20 A 339 VAL VAL GLN VAL GLU LYS PRO THR ILE THR GLU GLN VAL SEQRES 21 A 339 ASN GLU VAL LEU GLN LYS ALA SER GLN THR THR MET LYS SEQRES 22 A 339 GLY ILE ILE LYS TYR SER ASP LEU PRO LEU VAL SER SER SEQRES 23 A 339 ASP PHE ARG GLY THR ASP GLU SER SER ILE VAL ASP SER SEQRES 24 A 339 SER LEU THR LEU VAL MET ASP GLY ASP LEU VAL LYS VAL SEQRES 25 A 339 ILE ALA TRP TYR ASP ASN GLU TRP GLY TYR SER GLN ARG SEQRES 26 A 339 VAL VAL ASP LEU ALA GLU LEU ALA ALA ARG LYS TRP ALA SEQRES 27 A 339 ALA SEQRES 1 B 339 MET THR ILE ARG VAL ALA ILE ASN GLY PHE GLY ARG ILE SEQRES 2 B 339 GLY ARG ASN PHE LEU ARG CYS TRP PHE GLY ARG GLN ASN SEQRES 3 B 339 THR ASP LEU GLU VAL VAL ALA ILE ASN ASN THR SER ASP SEQRES 4 B 339 ALA ARG THR ALA ALA HIS LEU LEU GLU TYR ASP SER VAL SEQRES 5 B 339 LEU GLY ARG PHE ASN ALA ASP ILE SER TYR ASP GLU ASN SEQRES 6 B 339 SER ILE THR VAL ASN GLY LYS THR MET LYS ILE VAL CYS SEQRES 7 B 339 ASP ARG ASN PRO LEU ASN LEU PRO TRP LYS GLU TRP ASP SEQRES 8 B 339 ILE ASP LEU VAL ILE GLU SER THR GLY VAL PHE VAL THR SEQRES 9 B 339 ALA GLU GLY ALA SER LYS HIS ILE GLN ALA GLY ALA LYS SEQRES 10 B 339 LYS VAL LEU ILE THR ALA PRO GLY LYS GLY GLU GLY VAL SEQRES 11 B 339 GLY THR TYR VAL ILE GLY VAL ASN ASP SER GLU TYR ARG SEQRES 12 B 339 HIS GLU ASP PHE ALA VAL ILE SER ASN ALA SER CYS THR SEQRES 13 B 339 THR ASN CYS LEU ALA PRO VAL ALA LYS VAL LEU HIS ASP SEQRES 14 B 339 ASN PHE GLY ILE ILE LYS GLY THR MET THR THR THR HIS SEQRES 15 B 339 SER TYR THR LEU ASP GLN ARG ILE LEU ASP ALA SER HIS SEQRES 16 B 339 ARG ASP LEU ARG ARG ALA ARG ALA ALA ALA VAL ASN ILE SEQRES 17 B 339 VAL PRO THR THR THR GLY ALA ALA LYS ALA VAL ALA LEU SEQRES 18 B 339 VAL ILE PRO GLU LEU LYS GLY LYS LEU ASN GLY ILE ALA SEQRES 19 B 339 LEU ARG VAL PRO THR PRO ASN VAL SER VAL VAL ASP LEU SEQRES 20 B 339 VAL VAL GLN VAL GLU LYS PRO THR ILE THR GLU GLN VAL SEQRES 21 B 339 ASN GLU VAL LEU GLN LYS ALA SER GLN THR THR MET LYS SEQRES 22 B 339 GLY ILE ILE LYS TYR SER ASP LEU PRO LEU VAL SER SER SEQRES 23 B 339 ASP PHE ARG GLY THR ASP GLU SER SER ILE VAL ASP SER SEQRES 24 B 339 SER LEU THR LEU VAL MET ASP GLY ASP LEU VAL LYS VAL SEQRES 25 B 339 ILE ALA TRP TYR ASP ASN GLU TRP GLY TYR SER GLN ARG SEQRES 26 B 339 VAL VAL ASP LEU ALA GLU LEU ALA ALA ARG LYS TRP ALA SEQRES 27 B 339 ALA SEQRES 1 C 25 SER GLU THR GLU PRO PHE PHE GLY ASP TYR CYS SER GLU SEQRES 2 C 25 ASN PRO ASP ALA ALA GLU CYS LEU ILE TYR ASP ASP SEQRES 1 D 25 SER GLU THR GLU PRO PHE PHE GLY ASP TYR CYS SER GLU SEQRES 2 D 25 ASN PRO ASP ALA ALA GLU CYS LEU ILE TYR ASP ASP HET NAD A 340 44 HET CU A 341 1 HET NAD B 340 44 HET CU B 341 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CU COPPER (II) ION FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 6 CU 2(CU 2+) FORMUL 9 HOH *210(H2 O) HELIX 1 1 GLY A 11 ARG A 24 1 14 HELIX 2 2 ASP A 39 TYR A 49 1 11 HELIX 3 3 ASN A 81 LEU A 85 5 5 HELIX 4 4 THR A 104 ALA A 114 1 11 HELIX 5 5 ASN A 138 TYR A 142 5 5 HELIX 6 6 SER A 154 PHE A 171 1 18 HELIX 7 7 GLY A 214 ILE A 223 1 10 HELIX 8 8 PRO A 224 LYS A 227 5 4 HELIX 9 9 ILE A 256 THR A 270 1 15 HELIX 10 10 VAL A 284 ARG A 289 5 6 HELIX 11 11 SER A 300 THR A 302 5 3 HELIX 12 12 GLU A 319 LYS A 336 1 18 HELIX 13 13 GLY B 11 PHE B 22 1 12 HELIX 14 14 ASP B 39 TYR B 49 1 11 HELIX 15 15 ASN B 81 LEU B 85 5 5 HELIX 16 16 TRP B 87 ASP B 91 5 5 HELIX 17 17 THR B 104 SER B 109 1 6 HELIX 18 18 SER B 109 ALA B 114 1 6 HELIX 19 19 ASN B 138 TYR B 142 5 5 HELIX 20 20 SER B 154 GLY B 172 1 19 HELIX 21 21 ALA B 203 ASN B 207 5 5 HELIX 22 22 GLY B 214 VAL B 219 1 6 HELIX 23 23 ALA B 220 VAL B 222 5 3 HELIX 24 24 ILE B 223 LYS B 227 5 5 HELIX 25 25 ILE B 256 THR B 270 1 15 HELIX 26 26 VAL B 284 ARG B 289 5 6 HELIX 27 27 SER B 300 THR B 302 5 3 HELIX 28 28 GLU B 319 LYS B 336 1 18 HELIX 29 29 PHE C 56 ASN C 64 1 9 HELIX 30 30 PHE D 56 ASN D 64 1 9 SHEET 1 A 9 ILE A 60 ASP A 63 0 SHEET 2 A 9 SER A 66 VAL A 69 -1 O THR A 68 N SER A 61 SHEET 3 A 9 LYS A 72 VAL A 77 -1 O LYS A 72 N VAL A 69 SHEET 4 A 9 LEU A 29 ASN A 35 1 N ILE A 34 O LYS A 75 SHEET 5 A 9 ILE A 3 ASN A 8 1 N VAL A 5 O GLU A 30 SHEET 6 A 9 LEU A 94 GLU A 97 1 O ILE A 96 N ASN A 8 SHEET 7 A 9 LYS A 118 ILE A 121 1 O LEU A 120 N VAL A 95 SHEET 8 A 9 VAL A 149 SER A 151 1 O ILE A 150 N ILE A 121 SHEET 9 A 9 GLY A 131 THR A 132 1 N GLY A 131 O SER A 151 SHEET 1 B 7 VAL A 209 THR A 212 0 SHEET 2 B 7 LEU A 230 VAL A 237 -1 O ARG A 236 N VAL A 209 SHEET 3 B 7 ILE A 173 SER A 183 1 N THR A 180 O LEU A 235 SHEET 4 B 7 SER A 243 VAL A 251 -1 O ASP A 246 N THR A 179 SHEET 5 B 7 LEU A 309 TYR A 316 -1 O ALA A 314 N VAL A 245 SHEET 6 B 7 SER A 295 ASP A 298 -1 N ILE A 296 O TRP A 315 SHEET 7 B 7 ILE A 276 SER A 279 1 N LYS A 277 O SER A 295 SHEET 1 C 6 VAL A 209 THR A 212 0 SHEET 2 C 6 LEU A 230 VAL A 237 -1 O ARG A 236 N VAL A 209 SHEET 3 C 6 ILE A 173 SER A 183 1 N THR A 180 O LEU A 235 SHEET 4 C 6 SER A 243 VAL A 251 -1 O ASP A 246 N THR A 179 SHEET 5 C 6 LEU A 309 TYR A 316 -1 O ALA A 314 N VAL A 245 SHEET 6 C 6 LEU A 303 MET A 305 -1 N LEU A 303 O LYS A 311 SHEET 1 D 9 ILE B 60 ASP B 63 0 SHEET 2 D 9 SER B 66 VAL B 69 -1 O SER B 66 N ASP B 63 SHEET 3 D 9 LYS B 72 VAL B 77 -1 O LYS B 72 N VAL B 69 SHEET 4 D 9 LEU B 29 ASN B 35 1 N VAL B 32 O LYS B 75 SHEET 5 D 9 ILE B 3 ASN B 8 1 N ILE B 7 O ASN B 35 SHEET 6 D 9 LEU B 94 GLU B 97 1 O ILE B 96 N ALA B 6 SHEET 7 D 9 LYS B 118 ILE B 121 1 O LEU B 120 N VAL B 95 SHEET 8 D 9 VAL B 149 SER B 151 1 O ILE B 150 N ILE B 121 SHEET 9 D 9 VAL B 130 THR B 132 1 N GLY B 131 O SER B 151 SHEET 1 E 7 VAL B 209 THR B 212 0 SHEET 2 E 7 LEU B 230 VAL B 237 -1 O ARG B 236 N VAL B 209 SHEET 3 E 7 ILE B 173 SER B 183 1 N THR B 180 O LEU B 235 SHEET 4 E 7 SER B 243 VAL B 251 -1 O GLN B 250 N ILE B 174 SHEET 5 E 7 LEU B 309 TYR B 316 -1 O ALA B 314 N VAL B 245 SHEET 6 E 7 SER B 295 ASP B 298 -1 N ASP B 298 O ILE B 313 SHEET 7 E 7 ILE B 276 SER B 279 1 N LYS B 277 O SER B 295 SHEET 1 F 6 VAL B 209 THR B 212 0 SHEET 2 F 6 LEU B 230 VAL B 237 -1 O ARG B 236 N VAL B 209 SHEET 3 F 6 ILE B 173 SER B 183 1 N THR B 180 O LEU B 235 SHEET 4 F 6 SER B 243 VAL B 251 -1 O GLN B 250 N ILE B 174 SHEET 5 F 6 LEU B 309 TYR B 316 -1 O ALA B 314 N VAL B 245 SHEET 6 F 6 LEU B 303 MET B 305 -1 N MET B 305 O LEU B 309 SSBOND 1 CYS C 61 CYS C 70 1555 1555 2.03 SSBOND 2 CYS D 61 CYS D 70 1555 1555 2.04 LINK SG CYS A 155 CU CU A 341 1555 1555 2.21 LINK N THR A 156 CU CU A 341 1555 1555 2.52 LINK OG1 THR A 156 CU CU A 341 1555 1555 2.65 LINK CU CU A 341 O ASP C 75 1555 1555 2.61 LINK SG CYS B 155 CU CU B 341 1555 1555 1.99 LINK N THR B 156 CU CU B 341 1555 1555 2.27 LINK OG1 THR B 156 CU CU B 341 1555 1555 2.39 SITE 1 AC1 29 GLY A 9 PHE A 10 GLY A 11 ARG A 12 SITE 2 AC1 29 ILE A 13 ASN A 35 ASN A 36 THR A 37 SITE 3 AC1 29 ARG A 80 SER A 98 THR A 99 GLY A 100 SITE 4 AC1 29 THR A 122 ALA A 123 CYS A 155 LEU A 186 SITE 5 AC1 29 ASN A 318 TYR A 322 HOH A 343 HOH A 345 SITE 6 AC1 29 HOH A 353 HOH A 358 HOH A 365 HOH A 372 SITE 7 AC1 29 HOH A 389 HOH A 412 HOH A 421 TYR C 73 SITE 8 AC1 29 HOH C 108 SITE 1 AC2 3 CYS A 155 THR A 156 ASP C 75 SITE 1 AC3 29 GLY B 9 PHE B 10 GLY B 11 ARG B 12 SITE 2 AC3 29 ILE B 13 ASN B 35 ASN B 36 THR B 37 SITE 3 AC3 29 ARG B 80 SER B 98 THR B 99 GLY B 100 SITE 4 AC3 29 THR B 122 ALA B 123 CYS B 155 LEU B 186 SITE 5 AC3 29 ASN B 318 TYR B 322 HOH B 343 HOH B 354 SITE 6 AC3 29 HOH B 358 HOH B 402 HOH B 403 HOH B 409 SITE 7 AC3 29 HOH B 410 HOH B 437 ASP D 66 TYR D 73 SITE 8 AC3 29 ASP D 74 SITE 1 AC4 4 CYS B 155 THR B 156 HIS B 182 ASP D 75 CRYST1 69.999 161.603 146.876 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006808 0.00000