HEADER TRANSFERASE 19-OCT-07 3B33 TITLE CRYSTAL STRUCTURE OF THE PAS DOMAIN OF NITROGEN REGULATION PROTEIN TITLE 2 NR(II) FROM VIBRIO PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PAS DOMAIN: RESIDUES 1-112; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS RIMD 2210633; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633 / SEROTYPE O3:K6; SOURCE 5 GENE: VP0119; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PAS DOMAIN, NITROGEN REGULATION PROTEIN, KEYWDS 2 APC91440.4, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, KINASE, PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,A.SATHER,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 25-OCT-17 3B33 1 REMARK REVDAT 3 13-JUL-11 3B33 1 VERSN REVDAT 2 24-FEB-09 3B33 1 VERSN REVDAT 1 30-OCT-07 3B33 0 JRNL AUTH J.OSIPIUK,A.SATHER,J.ABDULLAH,A.JOACHIMIAK JRNL TITL X-RAY STRUCTURE OF PAS DOMAIN OF NITROGEN REGULATION PROTEIN JRNL TITL 2 NR(II) FROM VIBRIO PARAHAEMOLYTICUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 11938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 566 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 727 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 40.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.830 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 936 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1300 ; 1.780 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 135 ; 6.496 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ;44.231 ;25.278 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 182 ;17.216 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.435 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 172 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 680 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 421 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 663 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 65 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.290 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.101 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 608 ; 1.194 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 985 ; 1.974 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 357 ; 2.279 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 300 ; 3.449 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0652 29.6684 6.6962 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0824 REMARK 3 T33: 0.0482 T12: 0.0095 REMARK 3 T13: -0.0903 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.3286 L22: 0.9307 REMARK 3 L33: 2.3028 L12: -0.5289 REMARK 3 L13: 0.5247 L23: -0.5038 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: 0.0615 S13: 0.0292 REMARK 3 S21: 0.0527 S22: -0.0063 S23: -0.0885 REMARK 3 S31: -0.1610 S32: 0.0032 S33: 0.0379 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3378 27.6890 12.9183 REMARK 3 T TENSOR REMARK 3 T11: 0.0198 T22: 0.0576 REMARK 3 T33: -0.1293 T12: 0.0038 REMARK 3 T13: 0.0727 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 9.7219 L22: 30.9510 REMARK 3 L33: 14.4818 L12: -6.7434 REMARK 3 L13: -0.9129 L23: -9.4016 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: -0.6625 S13: -0.2476 REMARK 3 S21: 1.1903 S22: 0.5271 S23: 0.9285 REMARK 3 S31: -1.0310 S32: -0.0650 S33: -0.5118 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9658 30.8035 19.1129 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.0473 REMARK 3 T33: -0.0804 T12: 0.0755 REMARK 3 T13: -0.0079 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 27.9516 L22: 10.6586 REMARK 3 L33: 18.4075 L12: -14.9551 REMARK 3 L13: 10.5529 L23: 0.5445 REMARK 3 S TENSOR REMARK 3 S11: -0.8340 S12: -1.4893 S13: 0.1680 REMARK 3 S21: 0.3876 S22: 0.6190 S23: -0.1747 REMARK 3 S31: -1.2053 S32: -1.4854 S33: 0.2150 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9814 15.7990 18.0837 REMARK 3 T TENSOR REMARK 3 T11: -0.0918 T22: 0.0859 REMARK 3 T33: -0.0280 T12: -0.0264 REMARK 3 T13: -0.0633 T23: 0.1852 REMARK 3 L TENSOR REMARK 3 L11: 2.1052 L22: 3.8488 REMARK 3 L33: 10.0338 L12: -2.8433 REMARK 3 L13: 0.8250 L23: -0.8235 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: -0.4913 S13: -0.2093 REMARK 3 S21: 0.0655 S22: 0.3737 S23: 0.0525 REMARK 3 S31: -0.0964 S32: -0.4429 S33: -0.2464 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9666 13.8858 7.1582 REMARK 3 T TENSOR REMARK 3 T11: -0.0995 T22: -0.0458 REMARK 3 T33: 0.0348 T12: 0.0760 REMARK 3 T13: -0.0854 T23: 0.0740 REMARK 3 L TENSOR REMARK 3 L11: 46.6972 L22: 11.3526 REMARK 3 L33: 16.9788 L12: 7.8922 REMARK 3 L13: -18.9948 L23: 1.2052 REMARK 3 S TENSOR REMARK 3 S11: 0.4740 S12: -0.9681 S13: -1.0721 REMARK 3 S21: -0.1021 S22: 0.1248 S23: -0.7442 REMARK 3 S31: 0.9188 S32: 0.5521 S33: -0.5987 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5457 11.3490 4.6686 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: -0.0667 REMARK 3 T33: 0.0699 T12: -0.0492 REMARK 3 T13: -0.1822 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 31.2322 L22: 9.5577 REMARK 3 L33: 6.3106 L12: 11.9619 REMARK 3 L13: -9.3666 L23: 0.3835 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: 0.3022 S13: -1.3278 REMARK 3 S21: -0.5708 S22: -0.1057 S23: 0.0564 REMARK 3 S31: 0.9136 S32: -0.2518 S33: 0.0262 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4774 16.9391 17.2552 REMARK 3 T TENSOR REMARK 3 T11: -0.1228 T22: 0.3431 REMARK 3 T33: -0.0264 T12: 0.0520 REMARK 3 T13: -0.0453 T23: 0.3663 REMARK 3 L TENSOR REMARK 3 L11: 9.3915 L22: 16.6983 REMARK 3 L33: 26.0481 L12: -2.5825 REMARK 3 L13: -10.9396 L23: 5.2257 REMARK 3 S TENSOR REMARK 3 S11: 0.3953 S12: -0.3940 S13: -0.5856 REMARK 3 S21: 0.4615 S22: 0.4366 S23: 1.2115 REMARK 3 S31: -1.1203 S32: -1.8430 S33: -0.8319 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3036 23.1130 6.1325 REMARK 3 T TENSOR REMARK 3 T11: -0.0095 T22: 0.0938 REMARK 3 T33: 0.1594 T12: -0.0531 REMARK 3 T13: -0.0701 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 19.4758 L22: 1.6609 REMARK 3 L33: 3.0185 L12: 1.5443 REMARK 3 L13: 0.2393 L23: -2.1349 REMARK 3 S TENSOR REMARK 3 S11: 0.1121 S12: -0.3921 S13: 1.4747 REMARK 3 S21: 0.0069 S22: -0.1994 S23: 0.0856 REMARK 3 S31: 0.1318 S32: 0.3463 S33: 0.0873 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 102 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9840 20.8690 6.4927 REMARK 3 T TENSOR REMARK 3 T11: 0.0397 T22: 0.0659 REMARK 3 T33: 0.0205 T12: -0.0232 REMARK 3 T13: -0.0688 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 9.3785 L22: 1.7929 REMARK 3 L33: 2.8255 L12: 1.6023 REMARK 3 L13: 5.1071 L23: 0.6127 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: -0.1676 S13: -0.1052 REMARK 3 S21: 0.0160 S22: 0.1073 S23: -0.1093 REMARK 3 S31: 0.0012 S32: -0.0859 S33: -0.0391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000045017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 35.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 18.30 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, SOLVE, RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 3 M SODIUM REMARK 280 CHLORIDE, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.73350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.73350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.73350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.73350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 33.73350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.73350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 115 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 ASP A 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 120 O HOH A 176 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 46 OE2 GLU A 46 10665 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 46 -0.32 70.79 REMARK 500 ASP A 83 52.66 33.60 REMARK 500 ASP A 83 50.21 36.35 REMARK 500 ARG A 100 24.53 47.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC91440.4 RELATED DB: TARGETDB DBREF 3B33 A 1 112 UNP Q87TF0 Q87TF0_VIBPA 1 112 SEQADV 3B33 SER A -2 UNP Q87TF0 EXPRESSION TAG SEQADV 3B33 ASN A -1 UNP Q87TF0 EXPRESSION TAG SEQADV 3B33 ALA A 0 UNP Q87TF0 EXPRESSION TAG SEQRES 1 A 115 SER ASN ALA MSE ASP THR SER LEU PRO SER ALA ILE LEU SEQRES 2 A 115 ASN ASN MSE VAL THR ALA THR LEU ILE LEU ASP ASP GLY SEQRES 3 A 115 LEU ALA ILE ARG TYR ALA ASN PRO ALA ALA GLU LEU LEU SEQRES 4 A 115 PHE SER GLN SER ALA LYS ARG ILE VAL GLU GLN SER LEU SEQRES 5 A 115 SER GLN LEU ILE GLN HIS ALA SER LEU ASP LEU ALA LEU SEQRES 6 A 115 LEU THR GLN PRO LEU GLN SER GLY GLN SER ILE THR ASP SEQRES 7 A 115 SER ASP VAL THR PHE VAL VAL ASP GLY ARG PRO LEU MSE SEQRES 8 A 115 LEU GLU VAL THR VAL SER PRO ILE THR TRP GLN ARG GLN SEQRES 9 A 115 LEU MSE LEU LEU VAL GLU MSE ARG LYS ILE ASP MODRES 3B33 MSE A 13 MET SELENOMETHIONINE MODRES 3B33 MSE A 88 MET SELENOMETHIONINE MODRES 3B33 MSE A 103 MET SELENOMETHIONINE MODRES 3B33 MSE A 108 MET SELENOMETHIONINE HET MSE A 13 13 HET MSE A 88 8 HET MSE A 103 8 HET MSE A 108 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 HOH *69(H2 O) HELIX 1 1 SER A 4 MSE A 13 1 10 HELIX 2 2 ASN A 30 PHE A 37 1 8 HELIX 3 3 SER A 40 VAL A 45 1 6 HELIX 4 4 SER A 48 ILE A 53 1 6 HELIX 5 5 LEU A 60 GLY A 70 1 11 SHEET 1 A 6 ILE A 26 ALA A 29 0 SHEET 2 A 6 ALA A 16 LEU A 20 -1 N ILE A 19 O ARG A 27 SHEET 3 A 6 GLN A 101 LYS A 110 -1 O VAL A 106 N LEU A 18 SHEET 4 A 6 ARG A 85 TRP A 98 -1 N SER A 94 O LEU A 105 SHEET 5 A 6 ILE A 73 VAL A 82 -1 N PHE A 80 O LEU A 87 SHEET 6 A 6 HIS A 55 SER A 57 -1 N HIS A 55 O VAL A 81 LINK C ASN A 12 N MSE A 13 1555 1555 1.31 LINK C MSE A 13 N VAL A 14 1555 1555 1.33 LINK C LEU A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N LEU A 89 1555 1555 1.34 LINK C LEU A 102 N MSE A 103 1555 1555 1.33 LINK C MSE A 103 N LEU A 104 1555 1555 1.32 LINK C GLU A 107 N MSE A 108 1555 1555 1.34 LINK C MSE A 108 N ARG A 109 1555 1555 1.34 CRYST1 81.115 81.115 67.467 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012328 0.007118 0.000000 0.00000 SCALE2 0.000000 0.014235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014822 0.00000