HEADER HYDROLASE 23-OCT-07 3B40 TITLE CRYSTAL STRUCTURE OF THE PROBABLE DIPEPTIDASE PVDM FROM PSEUDOMONAS TITLE 2 AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE DIPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 34-448; COMPND 5 SYNONYM: PVDM; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PVDM, PA2393; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, HYDROLASE, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,Y.PATSKOVSKY,M.DICKEY,K.T.BAIN,M.MENDOZA,R.FONG,D.SMITH, AUTHOR 2 S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH AUTHOR 3 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 8 21-FEB-24 3B40 1 REMARK REVDAT 7 20-OCT-21 3B40 1 SEQADV REVDAT 6 03-FEB-21 3B40 1 AUTHOR JRNL REMARK SEQADV REVDAT 6 2 1 LINK REVDAT 5 14-NOV-18 3B40 1 AUTHOR REVDAT 4 25-OCT-17 3B40 1 REMARK REVDAT 3 24-FEB-09 3B40 1 VERSN REVDAT 2 25-DEC-07 3B40 1 AUTHOR JRNL REVDAT 1 06-NOV-07 3B40 0 JRNL AUTH J.B.BONANNO,Y.PATSKOVSKY,M.DICKEY,K.T.BAIN,M.MENDOZA,R.FONG, JRNL AUTH 2 D.SMITH,S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE PROBABLE DIPEPTIDASE PVDM FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1788 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2462 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.321 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3201 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4340 ; 1.439 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 6.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;34.536 ;23.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 535 ;14.810 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.404 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2463 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1565 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2193 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 328 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.394 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.108 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2062 ; 0.772 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3192 ; 1.205 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1320 ; 2.237 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1146 ; 3.506 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, SEMET MODELED AS MET, METAL IDENTITIES TENTATIVELY REMARK 3 ASSIGNED DUE TO MIXTURE IN CRYSTALLIZATION CONDITION REMARK 4 REMARK 4 3B40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000045050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35783 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.17200 REMARK 200 R SYM (I) : 0.17200 REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : 0.35900 REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.0, 3% PEG 3350, 5MM REMARK 280 CALCIUM CHLORIDE, 5MM NICKEL CHLORIDE HEXAHYDRATE, 5MM MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE, 5MM CADMIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 73.56150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 73.56150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 73.56150 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 73.56150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 73.56150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 73.56150 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 73.56150 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 73.56150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 73.56150 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 73.56150 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 73.56150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 73.56150 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 73.56150 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 73.56150 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 73.56150 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 73.56150 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 73.56150 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 73.56150 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 73.56150 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 73.56150 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 73.56150 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 73.56150 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 73.56150 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 73.56150 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 73.56150 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 73.56150 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 73.56150 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 73.56150 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 73.56150 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 73.56150 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 73.56150 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 73.56150 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 73.56150 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 73.56150 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 73.56150 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 73.56150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN, PROBABLY MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 449 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 32 REMARK 465 LEU A 33 REMARK 465 SER A 34 REMARK 465 GLU A 35 REMARK 465 ALA A 36 REMARK 465 GLY A 37 REMARK 465 ASN A 106 REMARK 465 GLY A 107 REMARK 465 PRO A 108 REMARK 465 ASN A 109 REMARK 465 ALA A 110 REMARK 465 LYS A 443 REMARK 465 PRO A 444 REMARK 465 THR A 445 REMARK 465 ALA A 446 REMARK 465 THR A 447 REMARK 465 PRO A 448 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 422 O HOH A 824 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 71 51.08 -145.80 REMARK 500 ASN A 170 114.19 98.89 REMARK 500 TYR A 196 -156.91 -129.28 REMARK 500 GLN A 244 -21.26 92.28 REMARK 500 PRO A 334 83.15 -68.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 1 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 48 OE1 REMARK 620 2 GLU A 48 OE2 54.4 REMARK 620 3 GLU A 51 OE1 78.8 111.8 REMARK 620 4 GLU A 51 OE2 95.8 83.8 52.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 2 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 384 NE2 REMARK 620 2 HOH A 530 O 88.8 REMARK 620 3 HOH A 792 O 91.3 87.6 REMARK 620 4 HOH A 793 O 99.8 166.2 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 450 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 45 NE2 REMARK 620 2 ASP A 420 OD1 72.8 REMARK 620 3 HOH A 795 O 102.5 111.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 451 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 ASP A 120 OD2 50.2 REMARK 620 3 HIS A 124 NE2 101.2 74.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 451 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9240B RELATED DB: TARGETDB DBREF 3B40 A 34 448 UNP Q9I187 Q9I187_PSEAE 34 448 SEQADV 3B40 SER A 32 UNP Q9I187 EXPRESSION TAG SEQADV 3B40 LEU A 33 UNP Q9I187 EXPRESSION TAG SEQADV 3B40 GLN A 44 UNP Q9I187 LYS 44 ENGINEERED MUTATION SEQADV 3B40 VAL A 62 UNP Q9I187 ILE 62 ENGINEERED MUTATION SEQADV 3B40 LEU A 64 UNP Q9I187 PRO 64 ENGINEERED MUTATION SEQADV 3B40 THR A 69 UNP Q9I187 GLU 69 ENGINEERED MUTATION SEQADV 3B40 VAL A 73 UNP Q9I187 PHE 73 ENGINEERED MUTATION SEQADV 3B40 GLY A 79 UNP Q9I187 ASN 79 ENGINEERED MUTATION SEQADV 3B40 SER A 195 UNP Q9I187 ASN 195 ENGINEERED MUTATION SEQADV 3B40 ALA A 203 UNP Q9I187 SER 203 ENGINEERED MUTATION SEQADV 3B40 SER A 215 UNP Q9I187 THR 215 ENGINEERED MUTATION SEQADV 3B40 PRO A 216 UNP Q9I187 ALA 216 ENGINEERED MUTATION SEQADV 3B40 ASP A 314 UNP Q9I187 ASN 314 ENGINEERED MUTATION SEQRES 1 A 417 SER LEU SER GLU ALA GLY TYR PRO ARG LYS VAL MET GLN SEQRES 2 A 417 HIS ALA GLU GLU LEU HIS GLU ARG ILE LEU SER PHE ASP SEQRES 3 A 417 SER ARG ILE THR VAL PRO LEU ASP PHE GLY THR THR GLY SEQRES 4 A 417 ASN GLU VAL ASP LYS ASP GLY PRO GLY GLN LEU ASP LEU SEQRES 5 A 417 VAL LYS ALA GLY ARG GLY ARG LEU SER GLY ALA ALA LEU SEQRES 6 A 417 ALA ILE PHE GLY TRP PRO GLU MET TRP ASN GLY PRO ASN SEQRES 7 A 417 ALA PRO HIS LYS PRO THR PRO GLY PHE VAL ASP GLU ALA SEQRES 8 A 417 ARG HIS GLN GLN GLU ILE ARG TYR LYS ILE LEU THR GLY SEQRES 9 A 417 MET VAL ARG ASP PHE PRO ASN GLN VAL GLY ILE ALA TYR SEQRES 10 A 417 SER PRO GLU ASP PHE ARG ARG LEU ALA MET GLU GLY LYS SEQRES 11 A 417 PHE ALA ILE VAL MET SER MET LEU ASN ALA TYR PRO LEU SEQRES 12 A 417 GLY ASP ASP LEU SER GLN LEU ASP LYS TRP ALA ALA ARG SEQRES 13 A 417 GLY VAL ARG MET PHE GLY PHE SER TYR VAL GLY ASN ASN SEQRES 14 A 417 ASP TRP ALA ASP SER SER ARG PRO LEU PRO PHE PHE ASN SEQRES 15 A 417 ASP SER PRO ASP ALA LEU GLY GLY LEU SER PRO LEU GLY SEQRES 16 A 417 LYS GLN ALA VAL GLU ARG LEU ASN ASP LEU GLY VAL ILE SEQRES 17 A 417 ILE ASP VAL SER GLN MET SER THR LYS ALA LEU GLU GLN SEQRES 18 A 417 VAL ALA ALA LEU SER ARG ALA PRO ILE VAL ALA SER HIS SEQRES 19 A 417 SER ALA PRO ARG ALA LEU VAL ASP ILE LYS ARG ASN LEU SEQRES 20 A 417 SER ASP HIS GLU MET GLN LEU ILE LYS ASP SER GLY GLY SEQRES 21 A 417 VAL ILE GLN VAL VAL GLY PHE PRO ALA TYR LEU ARG PRO SEQRES 22 A 417 LEU SER LYS PRO THR LEU ASP LYS LEU ASP ALA LEU ARG SEQRES 23 A 417 ALA ARG PHE ASP LEU PRO PRO LEU GLU GLY LEU ASP TYR SEQRES 24 A 417 ALA LEU MET PRO GLY ASP PRO ILE ILE THR ILE TRP PRO SEQRES 25 A 417 GLU GLN ARG PHE GLY GLU TYR ALA SER ALA LEU TYR GLY SEQRES 26 A 417 ILE LEU GLU GLU GLU PRO LYS ALA GLY LEU LYS GLU LEU SEQRES 27 A 417 VAL ASP ALA ILE ASP TYR THR VAL LYS LYS VAL GLY ILE SEQRES 28 A 417 ASP HIS VAL GLY ILE SER SER ASP PHE ASN ASP GLY GLY SEQRES 29 A 417 GLY VAL ASP GLY TRP LYS ASP VAL SER GLU ILE ARG ASN SEQRES 30 A 417 VAL THR ALA GLU LEU ILE THR ARG GLY TYR SER ASP ALA SEQRES 31 A 417 ASP ILE ALA LYS LEU TRP GLY GLY ASN PHE LEU ARG ALA SEQRES 32 A 417 TRP GLY GLU VAL GLN LYS ARG ALA LYS PRO THR ALA THR SEQRES 33 A 417 PRO HET CD A 1 1 HET CD A 2 1 HET MG A 449 1 HET CA A 450 1 HET CA A 451 1 HETNAM CD CADMIUM ION HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION FORMUL 2 CD 2(CD 2+) FORMUL 4 MG MG 2+ FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *376(H2 O) HELIX 1 1 PRO A 39 GLU A 51 1 13 HELIX 2 2 ASP A 82 ARG A 90 1 9 HELIX 3 3 GLY A 117 PHE A 140 1 24 HELIX 4 4 SER A 149 GLU A 159 1 11 HELIX 5 5 ALA A 171 GLY A 175 5 5 HELIX 6 6 LEU A 178 ARG A 187 1 10 HELIX 7 7 LEU A 209 ASN A 213 5 5 HELIX 8 8 SER A 223 GLY A 237 1 15 HELIX 9 9 SER A 246 SER A 257 1 12 HELIX 10 10 SER A 279 SER A 289 1 11 HELIX 11 11 PHE A 298 ARG A 303 1 6 HELIX 12 12 SER A 306 PHE A 320 1 15 HELIX 13 13 ASP A 336 TRP A 342 5 7 HELIX 14 14 PRO A 343 GLU A 360 1 18 HELIX 15 15 GLY A 365 GLY A 381 1 17 HELIX 16 16 ASP A 402 SER A 404 5 3 HELIX 17 17 GLU A 405 GLY A 417 1 13 HELIX 18 18 SER A 419 TRP A 427 1 9 HELIX 19 19 GLY A 428 ARG A 441 1 14 SHEET 1 A 4 PHE A 56 ILE A 60 0 SHEET 2 A 4 GLY A 93 PHE A 99 1 O ALA A 95 N ASP A 57 SHEET 3 A 4 PHE A 162 LEU A 169 1 O SER A 167 N ILE A 98 SHEET 4 A 4 VAL A 144 ILE A 146 1 N GLY A 145 O ILE A 164 SHEET 1 B 8 PHE A 56 ILE A 60 0 SHEET 2 B 8 GLY A 93 PHE A 99 1 O ALA A 95 N ASP A 57 SHEET 3 B 8 PHE A 162 LEU A 169 1 O SER A 167 N ILE A 98 SHEET 4 B 8 MET A 191 GLY A 193 1 O GLY A 193 N MET A 168 SHEET 5 B 8 ILE A 239 ASP A 241 1 O ASP A 241 N PHE A 192 SHEET 6 B 8 ILE A 261 SER A 266 1 O VAL A 262 N ILE A 240 SHEET 7 B 8 VAL A 292 VAL A 296 1 O GLN A 294 N ALA A 263 SHEET 8 B 8 VAL A 385 SER A 388 1 O GLY A 386 N ILE A 293 LINK CD CD A 1 OE1 GLU A 48 1555 1555 2.43 LINK CD CD A 1 OE2 GLU A 48 1555 1555 2.34 LINK CD CD A 1 OE1 GLU A 51 1555 1555 2.39 LINK CD CD A 1 OE2 GLU A 51 1555 1555 2.51 LINK CD CD A 2 NE2 HIS A 384 1555 1555 2.29 LINK CD CD A 2 O HOH A 530 1555 1555 2.50 LINK CD CD A 2 O HOH A 792 1555 1555 2.45 LINK CD CD A 2 O HOH A 793 1555 1555 2.32 LINK NE2 HIS A 45 CA CA A 450 1555 1555 2.40 LINK OD1 ASP A 120 CA CA A 451 1555 1555 2.62 LINK OD2 ASP A 120 CA CA A 451 1555 1555 2.63 LINK NE2 HIS A 124 CA CA A 451 1555 1555 2.63 LINK OE2 GLU A 349 MG MG A 449 1555 1555 2.32 LINK OD1 ASP A 420 CA CA A 450 1555 1555 2.85 LINK CA CA A 450 O HOH A 795 1555 1555 2.42 SITE 1 AC1 4 GLU A 48 GLU A 51 GLU A 231 ASP A 235 SITE 1 AC2 5 HIS A 384 HOH A 530 HOH A 792 HOH A 793 SITE 2 AC2 5 HOH A 794 SITE 1 AC3 1 GLU A 349 SITE 1 AC4 3 HIS A 45 ASP A 420 HOH A 795 SITE 1 AC5 2 ASP A 120 HIS A 124 CRYST1 147.123 147.123 147.123 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006797 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006797 0.00000