data_3B4Q # _entry.id 3B4Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3B4Q RCSB RCSB045076 WWPDB D_1000045076 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC90667.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3B4Q _pdbx_database_status.recvd_initial_deposition_date 2007-10-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Maltseva, N.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The structure of a conserved protein domain (unknown function) from Corynebacterium diphtheriae.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Maltseva, N.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3B4Q _cell.length_a 65.658 _cell.length_b 103.857 _cell.length_c 26.329 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3B4Q _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 9958.781 2 ? ? 'Domain: Residues 117-207' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 200 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNALNSAPTPRDVVANAPAPVQAAVAGAQEYAAQAGLNTEELAVDALYNAIKVRLAGTGLGIPPQIEAFYQANRTNFNGF Y(MSE)ANRGAIDFIFS(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;SNALNSAPTPRDVVANAPAPVQAAVAGAQEYAAQAGLNTEELAVDALYNAIKVRLAGTGLGIPPQIEAFYQANRTNFNGF YMANRGAIDFIFSM ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC90667.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 LEU n 1 5 ASN n 1 6 SER n 1 7 ALA n 1 8 PRO n 1 9 THR n 1 10 PRO n 1 11 ARG n 1 12 ASP n 1 13 VAL n 1 14 VAL n 1 15 ALA n 1 16 ASN n 1 17 ALA n 1 18 PRO n 1 19 ALA n 1 20 PRO n 1 21 VAL n 1 22 GLN n 1 23 ALA n 1 24 ALA n 1 25 VAL n 1 26 ALA n 1 27 GLY n 1 28 ALA n 1 29 GLN n 1 30 GLU n 1 31 TYR n 1 32 ALA n 1 33 ALA n 1 34 GLN n 1 35 ALA n 1 36 GLY n 1 37 LEU n 1 38 ASN n 1 39 THR n 1 40 GLU n 1 41 GLU n 1 42 LEU n 1 43 ALA n 1 44 VAL n 1 45 ASP n 1 46 ALA n 1 47 LEU n 1 48 TYR n 1 49 ASN n 1 50 ALA n 1 51 ILE n 1 52 LYS n 1 53 VAL n 1 54 ARG n 1 55 LEU n 1 56 ALA n 1 57 GLY n 1 58 THR n 1 59 GLY n 1 60 LEU n 1 61 GLY n 1 62 ILE n 1 63 PRO n 1 64 PRO n 1 65 GLN n 1 66 ILE n 1 67 GLU n 1 68 ALA n 1 69 PHE n 1 70 TYR n 1 71 GLN n 1 72 ALA n 1 73 ASN n 1 74 ARG n 1 75 THR n 1 76 ASN n 1 77 PHE n 1 78 ASN n 1 79 GLY n 1 80 PHE n 1 81 TYR n 1 82 MSE n 1 83 ALA n 1 84 ASN n 1 85 ARG n 1 86 GLY n 1 87 ALA n 1 88 ILE n 1 89 ASP n 1 90 PHE n 1 91 ILE n 1 92 PHE n 1 93 SER n 1 94 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Corynebacterium _entity_src_gen.pdbx_gene_src_gene DIP0775 _entity_src_gen.gene_src_species 'Corynebacterium diphtheriae' _entity_src_gen.gene_src_strain 'NCTC 13129 / Biotype gravis' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Corynebacterium diphtheriae NCTC 13129' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 257309 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 700971 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6NIK0_CORDI _struct_ref.pdbx_db_accession Q6NIK0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LNSAPTPRDVVANAPAPVQAAVAGAQEYAAQAGLNTEELAVDALYNAIKVRLAGTGLGIPPQIEAFYQANRTNFNGFYMA NRGAIDFIFSM ; _struct_ref.pdbx_align_begin 117 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3B4Q A 4 ? 94 ? Q6NIK0 117 ? 207 ? 117 207 2 1 3B4Q B 4 ? 94 ? Q6NIK0 117 ? 207 ? 117 207 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3B4Q SER A 1 ? UNP Q6NIK0 ? ? 'EXPRESSION TAG' 114 1 1 3B4Q ASN A 2 ? UNP Q6NIK0 ? ? 'EXPRESSION TAG' 115 2 1 3B4Q ALA A 3 ? UNP Q6NIK0 ? ? 'EXPRESSION TAG' 116 3 2 3B4Q SER B 1 ? UNP Q6NIK0 ? ? 'EXPRESSION TAG' 114 4 2 3B4Q ASN B 2 ? UNP Q6NIK0 ? ? 'EXPRESSION TAG' 115 5 2 3B4Q ALA B 3 ? UNP Q6NIK0 ? ? 'EXPRESSION TAG' 116 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3B4Q _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_percent_sol 45.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.2M Li2SO4, 0.1M Tris-HCl, 30% PEG 3000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-06-01 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97935 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97935 # _reflns.entry_id 3B4Q _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.55 _reflns.d_resolution_low 25.52 _reflns.number_all 25547 _reflns.number_obs 25547 _reflns.percent_possible_obs 94.6 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 38 _reflns.B_iso_Wilson_estimate 19.1 _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 65.8 _reflns_shell.Rmerge_I_obs 0.446 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 854 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3B4Q _refine.ls_number_reflns_obs 24247 _refine.ls_number_reflns_all 24247 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.52 _refine.ls_d_res_high 1.55 _refine.ls_percent_reflns_obs 94.52 _refine.ls_R_factor_obs 0.18621 _refine.ls_R_factor_all 0.18621 _refine.ls_R_factor_R_work 0.18463 _refine.ls_R_factor_R_free 0.2158 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1260 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.B_iso_mean 22.984 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.119 _refine.pdbx_overall_ESU_R_Free 0.089 _refine.overall_SU_ML 0.055 _refine.overall_SU_B 3.286 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1393 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 200 _refine_hist.number_atoms_total 1598 _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 25.52 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 1436 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.581 1.943 ? 1977 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.642 5.000 ? 198 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 42.222 24.872 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.293 15.000 ? 204 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.216 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.162 0.200 ? 215 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1181 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.229 0.200 ? 716 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.319 0.200 ? 1024 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.156 0.200 ? 126 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.164 0.200 ? 63 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.107 0.200 ? 24 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.496 1.500 ? 933 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.385 2.000 ? 1469 'X-RAY DIFFRACTION' ? r_scbond_it 3.959 3.000 ? 551 'X-RAY DIFFRACTION' ? r_scangle_it 4.644 4.500 ? 496 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3.250 3.000 ? 1484 'X-RAY DIFFRACTION' ? r_sphericity_free 5.731 3.000 ? 200 'X-RAY DIFFRACTION' ? r_sphericity_bonded 4.054 3.000 ? 1398 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.55 _refine_ls_shell.d_res_low 1.59 _refine_ls_shell.number_reflns_R_work 1239 _refine_ls_shell.R_factor_R_work 0.227 _refine_ls_shell.percent_reflns_obs 67.82 _refine_ls_shell.R_factor_R_free 0.234 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1298 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3B4Q _struct.title 'Crystal structure of a conserved protein domain (unknown function) from Corynebacterium diphtheriae' _struct.pdbx_descriptor 'Uncharacterized protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B4Q _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;APC90667.1, conserved protein domain, Corynebacterium diphtheriae, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details 'Authors state that the biological unit is experimentally unknown, it is likely that chains A and B form a dimer.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 9 ? VAL A 14 ? THR A 122 VAL A 127 1 ? 6 HELX_P HELX_P2 2 PRO A 18 ? GLY A 36 ? PRO A 131 GLY A 149 1 ? 19 HELX_P HELX_P3 3 ASN A 38 ? GLY A 57 ? ASN A 151 GLY A 170 1 ? 20 HELX_P HELX_P4 4 PRO A 63 ? ASN A 73 ? PRO A 176 ASN A 186 1 ? 11 HELX_P HELX_P5 5 ASN A 76 ? ASN A 84 ? ASN A 189 ASN A 197 1 ? 9 HELX_P HELX_P6 6 ASN A 84 ? PHE A 92 ? ASN A 197 PHE A 205 1 ? 9 HELX_P HELX_P7 7 THR B 9 ? VAL B 14 ? THR B 122 VAL B 127 1 ? 6 HELX_P HELX_P8 8 PRO B 18 ? GLY B 36 ? PRO B 131 GLY B 149 1 ? 19 HELX_P HELX_P9 9 ASN B 38 ? GLY B 57 ? ASN B 151 GLY B 170 1 ? 20 HELX_P HELX_P10 10 PRO B 63 ? ALA B 72 ? PRO B 176 ALA B 185 1 ? 10 HELX_P HELX_P11 11 ASN B 76 ? ASN B 84 ? ASN B 189 ASN B 197 1 ? 9 HELX_P HELX_P12 12 ASN B 84 ? MSE B 94 ? ASN B 197 MSE B 207 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A TYR 81 C ? ? ? 1_555 A MSE 82 N ? ? A TYR 194 A MSE 195 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? A MSE 82 C ? ? ? 1_555 A ALA 83 N ? ? A MSE 195 A ALA 196 1_555 ? ? ? ? ? ? ? 1.326 ? covale3 covale ? ? B TYR 81 C ? ? ? 1_555 B MSE 82 N ? ? B TYR 194 B MSE 195 1_555 ? ? ? ? ? ? ? 1.321 ? covale4 covale ? ? B MSE 82 C ? ? ? 1_555 B ALA 83 N ? ? B MSE 195 B ALA 196 1_555 ? ? ? ? ? ? ? 1.337 ? covale5 covale ? ? B SER 93 C ? ? ? 1_555 B MSE 94 N ? ? B SER 206 B MSE 207 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 LEU A 4 ? LEU A 117 . ? 2_555 ? 2 AC1 7 ARG A 85 ? ARG A 198 . ? 1_555 ? 3 AC1 7 ARG B 85 ? ARG B 198 . ? 3_546 ? 4 AC1 7 GLY B 86 ? GLY B 199 . ? 3_546 ? 5 AC1 7 HOH E . ? HOH B 210 . ? 3_546 ? 6 AC1 7 HOH E . ? HOH B 280 . ? 3_546 ? 7 AC1 7 HOH E . ? HOH B 286 . ? 3_546 ? # _database_PDB_matrix.entry_id 3B4Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3B4Q _atom_sites.fract_transf_matrix[1][1] 0.015230 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009629 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.037981 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 114 ? ? ? A . n A 1 2 ASN 2 115 ? ? ? A . n A 1 3 ALA 3 116 ? ? ? A . n A 1 4 LEU 4 117 117 LEU LEU A . n A 1 5 ASN 5 118 118 ASN ASN A . n A 1 6 SER 6 119 119 SER SER A . n A 1 7 ALA 7 120 120 ALA ALA A . n A 1 8 PRO 8 121 121 PRO PRO A . n A 1 9 THR 9 122 122 THR THR A . n A 1 10 PRO 10 123 123 PRO PRO A . n A 1 11 ARG 11 124 124 ARG ARG A . n A 1 12 ASP 12 125 125 ASP ASP A . n A 1 13 VAL 13 126 126 VAL VAL A . n A 1 14 VAL 14 127 127 VAL VAL A . n A 1 15 ALA 15 128 128 ALA ALA A . n A 1 16 ASN 16 129 129 ASN ASN A . n A 1 17 ALA 17 130 130 ALA ALA A . n A 1 18 PRO 18 131 131 PRO PRO A . n A 1 19 ALA 19 132 132 ALA ALA A . n A 1 20 PRO 20 133 133 PRO PRO A . n A 1 21 VAL 21 134 134 VAL VAL A . n A 1 22 GLN 22 135 135 GLN GLN A . n A 1 23 ALA 23 136 136 ALA ALA A . n A 1 24 ALA 24 137 137 ALA ALA A . n A 1 25 VAL 25 138 138 VAL VAL A . n A 1 26 ALA 26 139 139 ALA ALA A . n A 1 27 GLY 27 140 140 GLY GLY A . n A 1 28 ALA 28 141 141 ALA ALA A . n A 1 29 GLN 29 142 142 GLN GLN A . n A 1 30 GLU 30 143 143 GLU GLU A . n A 1 31 TYR 31 144 144 TYR TYR A . n A 1 32 ALA 32 145 145 ALA ALA A . n A 1 33 ALA 33 146 146 ALA ALA A . n A 1 34 GLN 34 147 147 GLN GLN A . n A 1 35 ALA 35 148 148 ALA ALA A . n A 1 36 GLY 36 149 149 GLY GLY A . n A 1 37 LEU 37 150 150 LEU LEU A . n A 1 38 ASN 38 151 151 ASN ASN A . n A 1 39 THR 39 152 152 THR THR A . n A 1 40 GLU 40 153 153 GLU GLU A . n A 1 41 GLU 41 154 154 GLU GLU A . n A 1 42 LEU 42 155 155 LEU LEU A . n A 1 43 ALA 43 156 156 ALA ALA A . n A 1 44 VAL 44 157 157 VAL VAL A . n A 1 45 ASP 45 158 158 ASP ASP A . n A 1 46 ALA 46 159 159 ALA ALA A . n A 1 47 LEU 47 160 160 LEU LEU A . n A 1 48 TYR 48 161 161 TYR TYR A . n A 1 49 ASN 49 162 162 ASN ASN A . n A 1 50 ALA 50 163 163 ALA ALA A . n A 1 51 ILE 51 164 164 ILE ILE A . n A 1 52 LYS 52 165 165 LYS LYS A . n A 1 53 VAL 53 166 166 VAL VAL A . n A 1 54 ARG 54 167 167 ARG ARG A . n A 1 55 LEU 55 168 168 LEU LEU A . n A 1 56 ALA 56 169 169 ALA ALA A . n A 1 57 GLY 57 170 170 GLY GLY A . n A 1 58 THR 58 171 ? ? ? A . n A 1 59 GLY 59 172 ? ? ? A . n A 1 60 LEU 60 173 ? ? ? A . n A 1 61 GLY 61 174 174 GLY GLY A . n A 1 62 ILE 62 175 175 ILE ILE A . n A 1 63 PRO 63 176 176 PRO PRO A . n A 1 64 PRO 64 177 177 PRO PRO A . n A 1 65 GLN 65 178 178 GLN GLN A . n A 1 66 ILE 66 179 179 ILE ILE A . n A 1 67 GLU 67 180 180 GLU GLU A . n A 1 68 ALA 68 181 181 ALA ALA A . n A 1 69 PHE 69 182 182 PHE PHE A . n A 1 70 TYR 70 183 183 TYR TYR A . n A 1 71 GLN 71 184 184 GLN GLN A . n A 1 72 ALA 72 185 185 ALA ALA A . n A 1 73 ASN 73 186 186 ASN ASN A . n A 1 74 ARG 74 187 187 ARG ARG A . n A 1 75 THR 75 188 188 THR THR A . n A 1 76 ASN 76 189 189 ASN ASN A . n A 1 77 PHE 77 190 190 PHE PHE A . n A 1 78 ASN 78 191 191 ASN ASN A . n A 1 79 GLY 79 192 192 GLY GLY A . n A 1 80 PHE 80 193 193 PHE PHE A . n A 1 81 TYR 81 194 194 TYR TYR A . n A 1 82 MSE 82 195 195 MSE MSE A . n A 1 83 ALA 83 196 196 ALA ALA A . n A 1 84 ASN 84 197 197 ASN ASN A . n A 1 85 ARG 85 198 198 ARG ARG A . n A 1 86 GLY 86 199 199 GLY GLY A . n A 1 87 ALA 87 200 200 ALA ALA A . n A 1 88 ILE 88 201 201 ILE ILE A . n A 1 89 ASP 89 202 202 ASP ASP A . n A 1 90 PHE 90 203 203 PHE PHE A . n A 1 91 ILE 91 204 204 ILE ILE A . n A 1 92 PHE 92 205 205 PHE PHE A . n A 1 93 SER 93 206 206 SER SER A . n A 1 94 MSE 94 207 ? ? ? A . n B 1 1 SER 1 114 ? ? ? B . n B 1 2 ASN 2 115 ? ? ? B . n B 1 3 ALA 3 116 ? ? ? B . n B 1 4 LEU 4 117 ? ? ? B . n B 1 5 ASN 5 118 118 ASN ASN B . n B 1 6 SER 6 119 119 SER SER B . n B 1 7 ALA 7 120 120 ALA ALA B . n B 1 8 PRO 8 121 121 PRO PRO B . n B 1 9 THR 9 122 122 THR THR B . n B 1 10 PRO 10 123 123 PRO PRO B . n B 1 11 ARG 11 124 124 ARG ARG B . n B 1 12 ASP 12 125 125 ASP ASP B . n B 1 13 VAL 13 126 126 VAL VAL B . n B 1 14 VAL 14 127 127 VAL VAL B . n B 1 15 ALA 15 128 128 ALA ALA B . n B 1 16 ASN 16 129 129 ASN ASN B . n B 1 17 ALA 17 130 130 ALA ALA B . n B 1 18 PRO 18 131 131 PRO PRO B . n B 1 19 ALA 19 132 132 ALA ALA B . n B 1 20 PRO 20 133 133 PRO PRO B . n B 1 21 VAL 21 134 134 VAL VAL B . n B 1 22 GLN 22 135 135 GLN GLN B . n B 1 23 ALA 23 136 136 ALA ALA B . n B 1 24 ALA 24 137 137 ALA ALA B . n B 1 25 VAL 25 138 138 VAL VAL B . n B 1 26 ALA 26 139 139 ALA ALA B . n B 1 27 GLY 27 140 140 GLY GLY B . n B 1 28 ALA 28 141 141 ALA ALA B . n B 1 29 GLN 29 142 142 GLN GLN B . n B 1 30 GLU 30 143 143 GLU GLU B . n B 1 31 TYR 31 144 144 TYR TYR B . n B 1 32 ALA 32 145 145 ALA ALA B . n B 1 33 ALA 33 146 146 ALA ALA B . n B 1 34 GLN 34 147 147 GLN GLN B . n B 1 35 ALA 35 148 148 ALA ALA B . n B 1 36 GLY 36 149 149 GLY GLY B . n B 1 37 LEU 37 150 150 LEU LEU B . n B 1 38 ASN 38 151 151 ASN ASN B . n B 1 39 THR 39 152 152 THR THR B . n B 1 40 GLU 40 153 153 GLU GLU B . n B 1 41 GLU 41 154 154 GLU GLU B . n B 1 42 LEU 42 155 155 LEU LEU B . n B 1 43 ALA 43 156 156 ALA ALA B . n B 1 44 VAL 44 157 157 VAL VAL B . n B 1 45 ASP 45 158 158 ASP ASP B . n B 1 46 ALA 46 159 159 ALA ALA B . n B 1 47 LEU 47 160 160 LEU LEU B . n B 1 48 TYR 48 161 161 TYR TYR B . n B 1 49 ASN 49 162 162 ASN ASN B . n B 1 50 ALA 50 163 163 ALA ALA B . n B 1 51 ILE 51 164 164 ILE ILE B . n B 1 52 LYS 52 165 165 LYS LYS B . n B 1 53 VAL 53 166 166 VAL VAL B . n B 1 54 ARG 54 167 167 ARG ARG B . n B 1 55 LEU 55 168 168 LEU LEU B . n B 1 56 ALA 56 169 169 ALA ALA B . n B 1 57 GLY 57 170 170 GLY GLY B . n B 1 58 THR 58 171 171 THR THR B . n B 1 59 GLY 59 172 172 GLY GLY B . n B 1 60 LEU 60 173 173 LEU LEU B . n B 1 61 GLY 61 174 174 GLY GLY B . n B 1 62 ILE 62 175 175 ILE ILE B . n B 1 63 PRO 63 176 176 PRO PRO B . n B 1 64 PRO 64 177 177 PRO PRO B . n B 1 65 GLN 65 178 178 GLN GLN B . n B 1 66 ILE 66 179 179 ILE ILE B . n B 1 67 GLU 67 180 180 GLU GLU B . n B 1 68 ALA 68 181 181 ALA ALA B . n B 1 69 PHE 69 182 182 PHE PHE B . n B 1 70 TYR 70 183 183 TYR TYR B . n B 1 71 GLN 71 184 184 GLN GLN B . n B 1 72 ALA 72 185 185 ALA ALA B . n B 1 73 ASN 73 186 186 ASN ASN B . n B 1 74 ARG 74 187 187 ARG ARG B . n B 1 75 THR 75 188 188 THR THR B . n B 1 76 ASN 76 189 189 ASN ASN B . n B 1 77 PHE 77 190 190 PHE PHE B . n B 1 78 ASN 78 191 191 ASN ASN B . n B 1 79 GLY 79 192 192 GLY GLY B . n B 1 80 PHE 80 193 193 PHE PHE B . n B 1 81 TYR 81 194 194 TYR TYR B . n B 1 82 MSE 82 195 195 MSE MSE B . n B 1 83 ALA 83 196 196 ALA ALA B . n B 1 84 ASN 84 197 197 ASN ASN B . n B 1 85 ARG 85 198 198 ARG ARG B . n B 1 86 GLY 86 199 199 GLY GLY B . n B 1 87 ALA 87 200 200 ALA ALA B . n B 1 88 ILE 88 201 201 ILE ILE B . n B 1 89 ASP 89 202 202 ASP ASP B . n B 1 90 PHE 90 203 203 PHE PHE B . n B 1 91 ILE 91 204 204 ILE ILE B . n B 1 92 PHE 92 205 205 PHE PHE B . n B 1 93 SER 93 206 206 SER SER B . n B 1 94 MSE 94 207 207 MSE MSE B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 1 1 SO4 SO4 A . D 3 HOH 1 208 2 HOH HOH A . D 3 HOH 2 209 4 HOH HOH A . D 3 HOH 3 210 5 HOH HOH A . D 3 HOH 4 211 6 HOH HOH A . D 3 HOH 5 212 7 HOH HOH A . D 3 HOH 6 213 8 HOH HOH A . D 3 HOH 7 214 9 HOH HOH A . D 3 HOH 8 215 10 HOH HOH A . D 3 HOH 9 216 12 HOH HOH A . D 3 HOH 10 217 13 HOH HOH A . D 3 HOH 11 218 14 HOH HOH A . D 3 HOH 12 219 16 HOH HOH A . D 3 HOH 13 220 17 HOH HOH A . D 3 HOH 14 221 18 HOH HOH A . D 3 HOH 15 222 19 HOH HOH A . D 3 HOH 16 223 20 HOH HOH A . D 3 HOH 17 224 21 HOH HOH A . D 3 HOH 18 225 22 HOH HOH A . D 3 HOH 19 226 23 HOH HOH A . D 3 HOH 20 227 25 HOH HOH A . D 3 HOH 21 228 28 HOH HOH A . D 3 HOH 22 229 31 HOH HOH A . D 3 HOH 23 230 32 HOH HOH A . D 3 HOH 24 231 34 HOH HOH A . D 3 HOH 25 232 38 HOH HOH A . D 3 HOH 26 233 40 HOH HOH A . D 3 HOH 27 234 42 HOH HOH A . D 3 HOH 28 235 44 HOH HOH A . D 3 HOH 29 236 45 HOH HOH A . D 3 HOH 30 237 46 HOH HOH A . D 3 HOH 31 238 47 HOH HOH A . D 3 HOH 32 239 48 HOH HOH A . D 3 HOH 33 240 54 HOH HOH A . D 3 HOH 34 241 56 HOH HOH A . D 3 HOH 35 242 57 HOH HOH A . D 3 HOH 36 243 58 HOH HOH A . D 3 HOH 37 244 59 HOH HOH A . D 3 HOH 38 245 60 HOH HOH A . D 3 HOH 39 246 61 HOH HOH A . D 3 HOH 40 247 63 HOH HOH A . D 3 HOH 41 248 64 HOH HOH A . D 3 HOH 42 249 68 HOH HOH A . D 3 HOH 43 250 69 HOH HOH A . D 3 HOH 44 251 72 HOH HOH A . D 3 HOH 45 252 78 HOH HOH A . D 3 HOH 46 253 80 HOH HOH A . D 3 HOH 47 254 82 HOH HOH A . D 3 HOH 48 255 84 HOH HOH A . D 3 HOH 49 256 86 HOH HOH A . D 3 HOH 50 257 87 HOH HOH A . D 3 HOH 51 258 89 HOH HOH A . D 3 HOH 52 259 91 HOH HOH A . D 3 HOH 53 260 92 HOH HOH A . D 3 HOH 54 261 94 HOH HOH A . D 3 HOH 55 262 97 HOH HOH A . D 3 HOH 56 263 98 HOH HOH A . D 3 HOH 57 264 99 HOH HOH A . D 3 HOH 58 265 114 HOH HOH A . D 3 HOH 59 266 116 HOH HOH A . D 3 HOH 60 267 120 HOH HOH A . D 3 HOH 61 268 128 HOH HOH A . D 3 HOH 62 269 129 HOH HOH A . D 3 HOH 63 270 130 HOH HOH A . D 3 HOH 64 271 135 HOH HOH A . D 3 HOH 65 272 136 HOH HOH A . D 3 HOH 66 273 139 HOH HOH A . D 3 HOH 67 274 140 HOH HOH A . D 3 HOH 68 275 144 HOH HOH A . D 3 HOH 69 276 150 HOH HOH A . D 3 HOH 70 277 159 HOH HOH A . D 3 HOH 71 278 165 HOH HOH A . D 3 HOH 72 279 168 HOH HOH A . D 3 HOH 73 280 169 HOH HOH A . D 3 HOH 74 281 171 HOH HOH A . D 3 HOH 75 282 178 HOH HOH A . D 3 HOH 76 283 179 HOH HOH A . D 3 HOH 77 284 180 HOH HOH A . D 3 HOH 78 285 184 HOH HOH A . D 3 HOH 79 286 189 HOH HOH A . D 3 HOH 80 287 191 HOH HOH A . D 3 HOH 81 288 192 HOH HOH A . D 3 HOH 82 289 196 HOH HOH A . D 3 HOH 83 290 197 HOH HOH A . D 3 HOH 84 291 200 HOH HOH A . D 3 HOH 85 292 204 HOH HOH A . D 3 HOH 86 293 230 HOH HOH A . D 3 HOH 87 294 231 HOH HOH A . D 3 HOH 88 295 233 HOH HOH A . D 3 HOH 89 296 234 HOH HOH A . D 3 HOH 90 297 235 HOH HOH A . D 3 HOH 91 298 236 HOH HOH A . D 3 HOH 92 299 237 HOH HOH A . D 3 HOH 93 300 243 HOH HOH A . D 3 HOH 94 301 245 HOH HOH A . D 3 HOH 95 302 249 HOH HOH A . D 3 HOH 96 303 250 HOH HOH A . D 3 HOH 97 304 251 HOH HOH A . D 3 HOH 98 305 252 HOH HOH A . D 3 HOH 99 306 255 HOH HOH A . D 3 HOH 100 307 259 HOH HOH A . D 3 HOH 101 308 261 HOH HOH A . D 3 HOH 102 309 262 HOH HOH A . D 3 HOH 103 310 264 HOH HOH A . D 3 HOH 104 311 266 HOH HOH A . D 3 HOH 105 312 267 HOH HOH A . D 3 HOH 106 313 269 HOH HOH A . D 3 HOH 107 314 270 HOH HOH A . D 3 HOH 108 315 272 HOH HOH A . D 3 HOH 109 316 273 HOH HOH A . D 3 HOH 110 317 275 HOH HOH A . D 3 HOH 111 318 276 HOH HOH A . D 3 HOH 112 319 286 HOH HOH A . D 3 HOH 113 320 288 HOH HOH A . D 3 HOH 114 321 289 HOH HOH A . D 3 HOH 115 322 290 HOH HOH A . D 3 HOH 116 323 102 HOH HOH A . E 3 HOH 1 208 1 HOH HOH B . E 3 HOH 2 209 3 HOH HOH B . E 3 HOH 3 210 11 HOH HOH B . E 3 HOH 4 211 15 HOH HOH B . E 3 HOH 5 212 24 HOH HOH B . E 3 HOH 6 213 26 HOH HOH B . E 3 HOH 7 214 27 HOH HOH B . E 3 HOH 8 215 29 HOH HOH B . E 3 HOH 9 216 30 HOH HOH B . E 3 HOH 10 217 33 HOH HOH B . E 3 HOH 11 218 36 HOH HOH B . E 3 HOH 12 219 39 HOH HOH B . E 3 HOH 13 220 41 HOH HOH B . E 3 HOH 14 221 43 HOH HOH B . E 3 HOH 15 222 50 HOH HOH B . E 3 HOH 16 223 52 HOH HOH B . E 3 HOH 17 224 53 HOH HOH B . E 3 HOH 18 225 55 HOH HOH B . E 3 HOH 19 226 65 HOH HOH B . E 3 HOH 20 227 67 HOH HOH B . E 3 HOH 21 228 70 HOH HOH B . E 3 HOH 22 229 71 HOH HOH B . E 3 HOH 23 230 73 HOH HOH B . E 3 HOH 24 231 74 HOH HOH B . E 3 HOH 25 232 75 HOH HOH B . E 3 HOH 26 233 76 HOH HOH B . E 3 HOH 27 234 77 HOH HOH B . E 3 HOH 28 235 83 HOH HOH B . E 3 HOH 29 236 85 HOH HOH B . E 3 HOH 30 237 88 HOH HOH B . E 3 HOH 31 238 93 HOH HOH B . E 3 HOH 32 239 95 HOH HOH B . E 3 HOH 33 240 96 HOH HOH B . E 3 HOH 34 241 100 HOH HOH B . E 3 HOH 35 242 101 HOH HOH B . E 3 HOH 36 244 103 HOH HOH B . E 3 HOH 37 245 104 HOH HOH B . E 3 HOH 38 246 105 HOH HOH B . E 3 HOH 39 247 110 HOH HOH B . E 3 HOH 40 248 111 HOH HOH B . E 3 HOH 41 249 112 HOH HOH B . E 3 HOH 42 250 113 HOH HOH B . E 3 HOH 43 251 117 HOH HOH B . E 3 HOH 44 252 118 HOH HOH B . E 3 HOH 45 253 119 HOH HOH B . E 3 HOH 46 254 121 HOH HOH B . E 3 HOH 47 255 133 HOH HOH B . E 3 HOH 48 256 138 HOH HOH B . E 3 HOH 49 257 145 HOH HOH B . E 3 HOH 50 258 149 HOH HOH B . E 3 HOH 51 259 154 HOH HOH B . E 3 HOH 52 260 156 HOH HOH B . E 3 HOH 53 261 160 HOH HOH B . E 3 HOH 54 262 163 HOH HOH B . E 3 HOH 55 263 167 HOH HOH B . E 3 HOH 56 264 172 HOH HOH B . E 3 HOH 57 265 176 HOH HOH B . E 3 HOH 58 266 177 HOH HOH B . E 3 HOH 59 267 190 HOH HOH B . E 3 HOH 60 268 194 HOH HOH B . E 3 HOH 61 269 208 HOH HOH B . E 3 HOH 62 270 232 HOH HOH B . E 3 HOH 63 271 241 HOH HOH B . E 3 HOH 64 272 242 HOH HOH B . E 3 HOH 65 273 244 HOH HOH B . E 3 HOH 66 274 247 HOH HOH B . E 3 HOH 67 275 248 HOH HOH B . E 3 HOH 68 276 257 HOH HOH B . E 3 HOH 69 277 258 HOH HOH B . E 3 HOH 70 278 260 HOH HOH B . E 3 HOH 71 279 263 HOH HOH B . E 3 HOH 72 280 265 HOH HOH B . E 3 HOH 73 281 271 HOH HOH B . E 3 HOH 74 282 274 HOH HOH B . E 3 HOH 75 283 277 HOH HOH B . E 3 HOH 76 284 278 HOH HOH B . E 3 HOH 77 285 279 HOH HOH B . E 3 HOH 78 286 280 HOH HOH B . E 3 HOH 79 287 281 HOH HOH B . E 3 HOH 80 288 282 HOH HOH B . E 3 HOH 81 289 283 HOH HOH B . E 3 HOH 82 290 284 HOH HOH B . E 3 HOH 83 291 285 HOH HOH B . E 3 HOH 84 292 287 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 82 A MSE 195 ? MET SELENOMETHIONINE 2 B MSE 82 B MSE 195 ? MET SELENOMETHIONINE 3 B MSE 94 B MSE 207 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA monomeric 1 2 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D 2 1 B,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-06 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 SHELXS phasing . ? 5 MLPHARE phasing . ? 6 HKL-3000 phasing . ? 7 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B LEU 150 ? ? O B HOH 285 ? ? 2.09 2 1 OH B TYR 161 ? ? OE2 B GLU 180 ? A 2.15 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 117 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 117 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 117 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 131.28 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 15.98 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 186 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -141.62 _pdbx_validate_torsion.psi 42.22 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id ASN _pdbx_validate_chiral.auth_seq_id 118 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 114 ? A SER 1 2 1 Y 1 A ASN 115 ? A ASN 2 3 1 Y 1 A ALA 116 ? A ALA 3 4 1 Y 1 A THR 171 ? A THR 58 5 1 Y 1 A GLY 172 ? A GLY 59 6 1 Y 1 A LEU 173 ? A LEU 60 7 1 Y 1 A MSE 207 ? A MSE 94 8 1 Y 1 B SER 114 ? B SER 1 9 1 Y 1 B ASN 115 ? B ASN 2 10 1 Y 1 B ALA 116 ? B ALA 3 11 1 Y 1 B LEU 117 ? B LEU 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #