HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-OCT-07 3B4S TITLE CRYSTAL STRUCTURE OF A LUXT DOMAIN FROM VIBRIO PARAHAEMOLYTICUS RIMD TITLE 2 2210633 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LUXT; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: LUXT DOMAIN: RESIDUES 63-153; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS RIMD 2210633; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633 / SEROTYPE O3:K6; SOURCE 5 GENE: VPA0420; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS APC91483.1, LUXT DOMAIN, VIBRIO PARAHAEMOLYTICUS RIMD 2210633, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.ZHOU,M.GU,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 (MCSG) REVDAT 3 16-OCT-24 3B4S 1 SEQADV LINK REVDAT 2 24-FEB-09 3B4S 1 VERSN REVDAT 1 06-NOV-07 3B4S 0 JRNL AUTH K.TAN,M.ZHOU,M.GU,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A LUXT DOMAIN FROM VIBRIO JRNL TITL 2 PARAHAEMOLYTICUS RIMD 2210633. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1490 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2028 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5906 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.707 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.337 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.697 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6034 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8069 ; 1.802 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 719 ; 6.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 301 ;39.684 ;23.887 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1133 ;24.239 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.925 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 847 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4496 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2926 ; 0.262 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4268 ; 0.333 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 163 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 97 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3633 ; 1.392 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5662 ; 2.420 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2693 ; 1.287 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2407 ; 2.137 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000045078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935, 0.97948 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29395 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS, MLPHARE, DM, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE, 1.3M DI REMARK 280 -AMMONIUM TARTRATE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 73.71900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.56168 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 127.49567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 73.71900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 42.56168 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 127.49567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 73.71900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 42.56168 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 127.49567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 73.71900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 42.56168 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 127.49567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 73.71900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 42.56168 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 127.49567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 73.71900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 42.56168 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 127.49567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 85.12337 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 254.99133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 85.12337 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 254.99133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 85.12337 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 254.99133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 85.12337 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 254.99133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 85.12337 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 254.99133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 85.12337 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 254.99133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS EXPERIMENTALLY REMARK 300 UNKNOWN. IT IS LIKELY A HEXAMER WITH THE ASSEMBLY SHOWN IN REMARK REMARK 300 350. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25990 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25680 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 60 REMARK 465 ASN A 61 REMARK 465 SER B 60 REMARK 465 ASN B 61 REMARK 465 ALA B 62 REMARK 465 SER C 60 REMARK 465 ASN C 61 REMARK 465 SER D 60 REMARK 465 ASN D 61 REMARK 465 ALA D 62 REMARK 465 ASP D 63 REMARK 465 SER E 60 REMARK 465 ASN E 61 REMARK 465 ALA E 62 REMARK 465 SER F 60 REMARK 465 ASN F 61 REMARK 465 ALA F 62 REMARK 465 ASP F 63 REMARK 465 SER G 60 REMARK 465 ASN G 61 REMARK 465 ALA G 62 REMARK 465 SER H 60 REMARK 465 ASN H 61 REMARK 465 ALA H 62 REMARK 465 ASP H 63 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG G 123 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 77 -158.73 -69.84 REMARK 500 LYS A 78 5.29 56.17 REMARK 500 VAL B 108 31.98 -89.59 REMARK 500 ASN B 119 12.61 -154.25 REMARK 500 GLU C 75 77.04 -118.15 REMARK 500 TRP C 87 -73.69 -59.88 REMARK 500 ALA C 118 41.40 -83.03 REMARK 500 HIS D 106 -51.63 -29.97 REMARK 500 SER D 112 -30.52 -32.10 REMARK 500 GLU D 115 -78.28 -58.70 REMARK 500 PHE D 116 -32.65 -38.64 REMARK 500 ASN D 119 19.36 -151.77 REMARK 500 LEU E 91 34.78 -90.65 REMARK 500 GLU E 92 14.75 -140.73 REMARK 500 SER E 94 6.05 -62.47 REMARK 500 GLU F 129 -70.20 -34.49 REMARK 500 SER F 130 -39.80 -36.33 REMARK 500 PHE F 132 -18.74 -141.78 REMARK 500 ALA G 118 54.39 -98.42 REMARK 500 GLU H 77 -77.82 -84.10 REMARK 500 LYS H 78 20.65 -49.40 REMARK 500 GLN H 85 -62.33 -28.42 REMARK 500 SER H 112 -20.63 -37.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC91483.1 RELATED DB: TARGETDB DBREF 3B4S A 63 153 UNP Q87J33 Q87J33_VIBPA 63 153 DBREF 3B4S B 63 153 UNP Q87J33 Q87J33_VIBPA 63 153 DBREF 3B4S C 63 153 UNP Q87J33 Q87J33_VIBPA 63 153 DBREF 3B4S D 63 153 UNP Q87J33 Q87J33_VIBPA 63 153 DBREF 3B4S E 63 153 UNP Q87J33 Q87J33_VIBPA 63 153 DBREF 3B4S F 63 153 UNP Q87J33 Q87J33_VIBPA 63 153 DBREF 3B4S G 63 153 UNP Q87J33 Q87J33_VIBPA 63 153 DBREF 3B4S H 63 153 UNP Q87J33 Q87J33_VIBPA 63 153 SEQADV 3B4S SER A 60 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ASN A 61 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ALA A 62 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S SER B 60 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ASN B 61 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ALA B 62 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S SER C 60 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ASN C 61 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ALA C 62 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S SER D 60 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ASN D 61 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ALA D 62 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S SER E 60 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ASN E 61 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ALA E 62 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S SER F 60 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ASN F 61 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ALA F 62 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S SER G 60 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ASN G 61 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ALA G 62 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S SER H 60 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ASN H 61 UNP Q87J33 EXPRESSION TAG SEQADV 3B4S ALA H 62 UNP Q87J33 EXPRESSION TAG SEQRES 1 A 94 SER ASN ALA ASP GLY ARG ILE PHE LYS MSE PHE ILE GLU SEQRES 2 A 94 HIS LEU GLU PHE GLU LYS GLY LEU ASP ALA PHE SER GLN SEQRES 3 A 94 SER TRP ILE LYS ALA LEU GLU ASP SER GLU PHE LEU ALA SEQRES 4 A 94 ILE LEU ARG LEU LEU PHE HIS HIS ILE VAL THR SER GLU SEQRES 5 A 94 SER ALA HIS GLU PHE ALA ALA ASN GLY ILE ASP ARG LEU SEQRES 6 A 94 TYR LYS MSE VAL GLU SER GLN PHE GLY SER GLY GLY ASP SEQRES 7 A 94 LYS GLU LEU GLU TRP LEU ILE GLY ARG SER LEU ILE GLN SEQRES 8 A 94 MSE SER LYS SEQRES 1 B 94 SER ASN ALA ASP GLY ARG ILE PHE LYS MSE PHE ILE GLU SEQRES 2 B 94 HIS LEU GLU PHE GLU LYS GLY LEU ASP ALA PHE SER GLN SEQRES 3 B 94 SER TRP ILE LYS ALA LEU GLU ASP SER GLU PHE LEU ALA SEQRES 4 B 94 ILE LEU ARG LEU LEU PHE HIS HIS ILE VAL THR SER GLU SEQRES 5 B 94 SER ALA HIS GLU PHE ALA ALA ASN GLY ILE ASP ARG LEU SEQRES 6 B 94 TYR LYS MSE VAL GLU SER GLN PHE GLY SER GLY GLY ASP SEQRES 7 B 94 LYS GLU LEU GLU TRP LEU ILE GLY ARG SER LEU ILE GLN SEQRES 8 B 94 MSE SER LYS SEQRES 1 C 94 SER ASN ALA ASP GLY ARG ILE PHE LYS MSE PHE ILE GLU SEQRES 2 C 94 HIS LEU GLU PHE GLU LYS GLY LEU ASP ALA PHE SER GLN SEQRES 3 C 94 SER TRP ILE LYS ALA LEU GLU ASP SER GLU PHE LEU ALA SEQRES 4 C 94 ILE LEU ARG LEU LEU PHE HIS HIS ILE VAL THR SER GLU SEQRES 5 C 94 SER ALA HIS GLU PHE ALA ALA ASN GLY ILE ASP ARG LEU SEQRES 6 C 94 TYR LYS MSE VAL GLU SER GLN PHE GLY SER GLY GLY ASP SEQRES 7 C 94 LYS GLU LEU GLU TRP LEU ILE GLY ARG SER LEU ILE GLN SEQRES 8 C 94 MSE SER LYS SEQRES 1 D 94 SER ASN ALA ASP GLY ARG ILE PHE LYS MSE PHE ILE GLU SEQRES 2 D 94 HIS LEU GLU PHE GLU LYS GLY LEU ASP ALA PHE SER GLN SEQRES 3 D 94 SER TRP ILE LYS ALA LEU GLU ASP SER GLU PHE LEU ALA SEQRES 4 D 94 ILE LEU ARG LEU LEU PHE HIS HIS ILE VAL THR SER GLU SEQRES 5 D 94 SER ALA HIS GLU PHE ALA ALA ASN GLY ILE ASP ARG LEU SEQRES 6 D 94 TYR LYS MSE VAL GLU SER GLN PHE GLY SER GLY GLY ASP SEQRES 7 D 94 LYS GLU LEU GLU TRP LEU ILE GLY ARG SER LEU ILE GLN SEQRES 8 D 94 MSE SER LYS SEQRES 1 E 94 SER ASN ALA ASP GLY ARG ILE PHE LYS MSE PHE ILE GLU SEQRES 2 E 94 HIS LEU GLU PHE GLU LYS GLY LEU ASP ALA PHE SER GLN SEQRES 3 E 94 SER TRP ILE LYS ALA LEU GLU ASP SER GLU PHE LEU ALA SEQRES 4 E 94 ILE LEU ARG LEU LEU PHE HIS HIS ILE VAL THR SER GLU SEQRES 5 E 94 SER ALA HIS GLU PHE ALA ALA ASN GLY ILE ASP ARG LEU SEQRES 6 E 94 TYR LYS MSE VAL GLU SER GLN PHE GLY SER GLY GLY ASP SEQRES 7 E 94 LYS GLU LEU GLU TRP LEU ILE GLY ARG SER LEU ILE GLN SEQRES 8 E 94 MSE SER LYS SEQRES 1 F 94 SER ASN ALA ASP GLY ARG ILE PHE LYS MSE PHE ILE GLU SEQRES 2 F 94 HIS LEU GLU PHE GLU LYS GLY LEU ASP ALA PHE SER GLN SEQRES 3 F 94 SER TRP ILE LYS ALA LEU GLU ASP SER GLU PHE LEU ALA SEQRES 4 F 94 ILE LEU ARG LEU LEU PHE HIS HIS ILE VAL THR SER GLU SEQRES 5 F 94 SER ALA HIS GLU PHE ALA ALA ASN GLY ILE ASP ARG LEU SEQRES 6 F 94 TYR LYS MSE VAL GLU SER GLN PHE GLY SER GLY GLY ASP SEQRES 7 F 94 LYS GLU LEU GLU TRP LEU ILE GLY ARG SER LEU ILE GLN SEQRES 8 F 94 MSE SER LYS SEQRES 1 G 94 SER ASN ALA ASP GLY ARG ILE PHE LYS MSE PHE ILE GLU SEQRES 2 G 94 HIS LEU GLU PHE GLU LYS GLY LEU ASP ALA PHE SER GLN SEQRES 3 G 94 SER TRP ILE LYS ALA LEU GLU ASP SER GLU PHE LEU ALA SEQRES 4 G 94 ILE LEU ARG LEU LEU PHE HIS HIS ILE VAL THR SER GLU SEQRES 5 G 94 SER ALA HIS GLU PHE ALA ALA ASN GLY ILE ASP ARG LEU SEQRES 6 G 94 TYR LYS MSE VAL GLU SER GLN PHE GLY SER GLY GLY ASP SEQRES 7 G 94 LYS GLU LEU GLU TRP LEU ILE GLY ARG SER LEU ILE GLN SEQRES 8 G 94 MSE SER LYS SEQRES 1 H 94 SER ASN ALA ASP GLY ARG ILE PHE LYS MSE PHE ILE GLU SEQRES 2 H 94 HIS LEU GLU PHE GLU LYS GLY LEU ASP ALA PHE SER GLN SEQRES 3 H 94 SER TRP ILE LYS ALA LEU GLU ASP SER GLU PHE LEU ALA SEQRES 4 H 94 ILE LEU ARG LEU LEU PHE HIS HIS ILE VAL THR SER GLU SEQRES 5 H 94 SER ALA HIS GLU PHE ALA ALA ASN GLY ILE ASP ARG LEU SEQRES 6 H 94 TYR LYS MSE VAL GLU SER GLN PHE GLY SER GLY GLY ASP SEQRES 7 H 94 LYS GLU LEU GLU TRP LEU ILE GLY ARG SER LEU ILE GLN SEQRES 8 H 94 MSE SER LYS MODRES 3B4S MSE A 69 MET SELENOMETHIONINE MODRES 3B4S MSE A 127 MET SELENOMETHIONINE MODRES 3B4S MSE A 151 MET SELENOMETHIONINE MODRES 3B4S MSE B 69 MET SELENOMETHIONINE MODRES 3B4S MSE B 127 MET SELENOMETHIONINE MODRES 3B4S MSE B 151 MET SELENOMETHIONINE MODRES 3B4S MSE C 69 MET SELENOMETHIONINE MODRES 3B4S MSE C 127 MET SELENOMETHIONINE MODRES 3B4S MSE C 151 MET SELENOMETHIONINE MODRES 3B4S MSE D 69 MET SELENOMETHIONINE MODRES 3B4S MSE D 127 MET SELENOMETHIONINE MODRES 3B4S MSE D 151 MET SELENOMETHIONINE MODRES 3B4S MSE E 69 MET SELENOMETHIONINE MODRES 3B4S MSE E 127 MET SELENOMETHIONINE MODRES 3B4S MSE E 151 MET SELENOMETHIONINE MODRES 3B4S MSE F 69 MET SELENOMETHIONINE MODRES 3B4S MSE F 127 MET SELENOMETHIONINE MODRES 3B4S MSE F 151 MET SELENOMETHIONINE MODRES 3B4S MSE G 69 MET SELENOMETHIONINE MODRES 3B4S MSE G 127 MET SELENOMETHIONINE MODRES 3B4S MSE G 151 MET SELENOMETHIONINE MODRES 3B4S MSE H 69 MET SELENOMETHIONINE MODRES 3B4S MSE H 127 MET SELENOMETHIONINE MODRES 3B4S MSE H 151 MET SELENOMETHIONINE HET MSE A 69 8 HET MSE A 127 8 HET MSE A 151 8 HET MSE B 69 8 HET MSE B 127 8 HET MSE B 151 8 HET MSE C 69 8 HET MSE C 127 8 HET MSE C 151 8 HET MSE D 69 8 HET MSE D 127 8 HET MSE D 151 8 HET MSE E 69 8 HET MSE E 127 8 HET MSE E 151 8 HET MSE F 69 8 HET MSE F 127 8 HET MSE F 151 8 HET MSE G 69 8 HET MSE G 127 8 HET MSE G 151 8 HET MSE H 69 8 HET MSE H 127 8 HET MSE H 151 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 24(C5 H11 N O2 SE) HELIX 1 1 GLY A 64 GLU A 72 1 9 HELIX 2 2 GLY A 79 LEU A 91 1 13 HELIX 3 3 ASP A 93 SER A 110 1 18 HELIX 4 4 SER A 112 ALA A 118 1 7 HELIX 5 5 ASN A 119 MSE A 151 1 33 HELIX 6 6 GLY B 64 GLU B 72 1 9 HELIX 7 7 LYS B 78 LEU B 91 1 14 HELIX 8 8 ASP B 93 HIS B 106 1 14 HELIX 9 9 SER B 110 GLY B 133 1 24 HELIX 10 10 GLY B 133 SER B 152 1 20 HELIX 11 11 GLY C 64 GLU C 72 1 9 HELIX 12 12 GLY C 79 LEU C 91 1 13 HELIX 13 13 ASP C 93 THR C 109 1 17 HELIX 14 14 SER C 112 ALA C 118 1 7 HELIX 15 15 ASN C 119 LYS C 153 1 35 HELIX 16 16 GLY D 64 GLU D 72 1 9 HELIX 17 17 LYS D 78 LEU D 91 1 14 HELIX 18 18 ASP D 93 HIS D 106 1 14 HELIX 19 19 ILE D 107 THR D 109 5 3 HELIX 20 20 SER D 110 GLY D 133 1 24 HELIX 21 21 SER D 134 LYS D 153 1 20 HELIX 22 22 GLY E 64 GLU E 72 1 9 HELIX 23 23 LYS E 78 LEU E 91 1 14 HELIX 24 24 ASP E 93 SER E 110 1 18 HELIX 25 25 SER E 112 ALA E 118 1 7 HELIX 26 26 ASN E 119 LYS E 153 1 35 HELIX 27 27 GLY F 64 GLU F 72 1 9 HELIX 28 28 LYS F 78 LEU F 91 1 14 HELIX 29 29 ASP F 93 THR F 109 1 17 HELIX 30 30 SER F 110 SER F 130 1 21 HELIX 31 31 GLY F 133 LYS F 153 1 21 HELIX 32 32 GLY G 64 GLU G 72 1 9 HELIX 33 33 GLY G 79 GLU G 92 1 14 HELIX 34 34 ASP G 93 THR G 109 1 17 HELIX 35 35 SER G 112 ALA G 118 1 7 HELIX 36 36 ASN G 119 LYS G 153 1 35 HELIX 37 37 GLY H 64 HIS H 73 1 10 HELIX 38 38 LEU H 80 LEU H 91 1 12 HELIX 39 39 ASP H 93 HIS H 105 1 13 HELIX 40 40 GLU H 111 GLY H 133 1 23 HELIX 41 41 GLY H 135 LYS H 153 1 19 LINK C LYS A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N PHE A 70 1555 1555 1.32 LINK C LYS A 126 N MSE A 127 1555 1555 1.34 LINK C MSE A 127 N VAL A 128 1555 1555 1.34 LINK C GLN A 150 N MSE A 151 1555 1555 1.34 LINK C MSE A 151 N SER A 152 1555 1555 1.33 LINK C LYS B 68 N MSE B 69 1555 1555 1.33 LINK C MSE B 69 N PHE B 70 1555 1555 1.33 LINK C LYS B 126 N MSE B 127 1555 1555 1.31 LINK C MSE B 127 N VAL B 128 1555 1555 1.33 LINK C GLN B 150 N MSE B 151 1555 1555 1.32 LINK C MSE B 151 N SER B 152 1555 1555 1.33 LINK C LYS C 68 N MSE C 69 1555 1555 1.32 LINK C MSE C 69 N PHE C 70 1555 1555 1.33 LINK C LYS C 126 N MSE C 127 1555 1555 1.33 LINK C MSE C 127 N VAL C 128 1555 1555 1.34 LINK C GLN C 150 N MSE C 151 1555 1555 1.34 LINK C MSE C 151 N SER C 152 1555 1555 1.34 LINK C LYS D 68 N MSE D 69 1555 1555 1.32 LINK C MSE D 69 N PHE D 70 1555 1555 1.33 LINK C LYS D 126 N MSE D 127 1555 1555 1.32 LINK C MSE D 127 N VAL D 128 1555 1555 1.32 LINK C GLN D 150 N MSE D 151 1555 1555 1.33 LINK C MSE D 151 N SER D 152 1555 1555 1.32 LINK C LYS E 68 N MSE E 69 1555 1555 1.32 LINK C MSE E 69 N PHE E 70 1555 1555 1.33 LINK C LYS E 126 N MSE E 127 1555 1555 1.33 LINK C MSE E 127 N VAL E 128 1555 1555 1.35 LINK C GLN E 150 N MSE E 151 1555 1555 1.32 LINK C MSE E 151 N SER E 152 1555 1555 1.32 LINK C LYS F 68 N MSE F 69 1555 1555 1.33 LINK C MSE F 69 N PHE F 70 1555 1555 1.32 LINK C LYS F 126 N MSE F 127 1555 1555 1.33 LINK C MSE F 127 N VAL F 128 1555 1555 1.33 LINK C GLN F 150 N MSE F 151 1555 1555 1.31 LINK C MSE F 151 N SER F 152 1555 1555 1.32 LINK C LYS G 68 N MSE G 69 1555 1555 1.33 LINK C MSE G 69 N PHE G 70 1555 1555 1.33 LINK C LYS G 126 N MSE G 127 1555 1555 1.34 LINK C MSE G 127 N VAL G 128 1555 1555 1.34 LINK C GLN G 150 N MSE G 151 1555 1555 1.33 LINK C MSE G 151 N SER G 152 1555 1555 1.32 LINK C LYS H 68 N MSE H 69 1555 1555 1.34 LINK C MSE H 69 N PHE H 70 1555 1555 1.33 LINK C LYS H 126 N MSE H 127 1555 1555 1.33 LINK C MSE H 127 N VAL H 128 1555 1555 1.32 LINK C GLN H 150 N MSE H 151 1555 1555 1.32 LINK C MSE H 151 N SER H 152 1555 1555 1.33 CRYST1 147.438 147.438 382.487 90.00 90.00 120.00 H 3 2 144 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006783 0.003916 0.000000 0.00000 SCALE2 0.000000 0.007832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002614 0.00000