HEADER HYDROLASE 25-OCT-07 3B5E TITLE CRYSTAL STRUCTURE OF CARBOXYLESTERASE (NP_108484.1) FROM MESORHIZOBIUM TITLE 2 LOTI AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MLL8374 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 266835; SOURCE 4 STRAIN: MAFF303099; SOURCE 5 GENE: NP_108484.1, MLL8374; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_108484.1, CARBOXYLESTERASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 3B5E 1 REMARK SEQADV REVDAT 5 24-JUL-19 3B5E 1 REMARK LINK REVDAT 4 25-OCT-17 3B5E 1 REMARK REVDAT 3 13-JUL-11 3B5E 1 VERSN REVDAT 2 24-FEB-09 3B5E 1 VERSN REVDAT 1 13-NOV-07 3B5E 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CARBOXYLESTERASE (NP_108484.1) FROM JRNL TITL 2 MESORHIZOBIUM LOTI AT 1.75 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 62069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 224 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3173 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 482 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.214 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3540 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2419 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4823 ; 1.526 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5875 ; 1.031 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 6.011 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;29.334 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 527 ;12.266 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;15.624 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4031 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 730 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 675 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2599 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1670 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1872 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 343 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.083 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.112 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2438 ; 1.914 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 895 ; 0.559 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3633 ; 2.629 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1364 ; 4.496 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1189 ; 6.715 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 215 4 REMARK 3 1 B 7 B 215 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2696 ; 0.330 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2696 ; 0.780 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 45.5875 42.4243 24.6654 REMARK 3 T TENSOR REMARK 3 T11: -0.0068 T22: -0.0339 REMARK 3 T33: -0.0161 T12: -0.0222 REMARK 3 T13: -0.0130 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.6717 L22: 0.7391 REMARK 3 L33: 1.2835 L12: 0.1943 REMARK 3 L13: 0.2092 L23: 0.5163 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: -0.0640 S13: 0.0791 REMARK 3 S21: 0.1472 S22: -0.0566 S23: -0.0194 REMARK 3 S31: -0.0365 S32: -0.0580 S33: 0.0277 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 215 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4092 13.6202 12.2196 REMARK 3 T TENSOR REMARK 3 T11: -0.0741 T22: -0.0553 REMARK 3 T33: -0.0250 T12: -0.0081 REMARK 3 T13: -0.0121 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.6411 L22: 0.5458 REMARK 3 L33: 1.3922 L12: -0.0221 REMARK 3 L13: 0.0487 L23: -0.1244 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: -0.0510 S13: -0.0757 REMARK 3 S21: 0.0813 S22: 0.0009 S23: -0.0207 REMARK 3 S31: 0.1145 S32: -0.0428 S33: -0.0298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. SO4 AND ETHYLENE GLYCOL ARE MODELED BASED ON CRYSTALLIZATION REMARK 3 AND CRYO CONDITIONS. REMARK 3 5. UNEXPLAINED ELECTRON DENSITIES NEAR RESIDUES 108 AND 209 REMARK 3 IN SUBUNIT A WERE NOT MODELED. REMARK 4 REMARK 4 3B5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000045099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62118 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.643 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 2.0M (NH4)2SO4, 0.2M LI2SO4, REMARK 280 0.1M CAPS PH 10.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.58000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.58000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE IN SOLUTION BUT CRYSTAL PACKING ANALYSIS DOES NOT REVEAL ANY REMARK 300 INTERFACES THAT ARE LIKELY STABLE AS A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ILE A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLY A 5 REMARK 465 ILE A 6 REMARK 465 ILE A 216 REMARK 465 ALA A 217 REMARK 465 ILE A 218 REMARK 465 ALA A 219 REMARK 465 GLN A 220 REMARK 465 ALA A 221 REMARK 465 ASP A 222 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ILE B 2 REMARK 465 ILE B 216 REMARK 465 ALA B 217 REMARK 465 ILE B 218 REMARK 465 ALA B 219 REMARK 465 GLN B 220 REMARK 465 ALA B 221 REMARK 465 ASP B 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 27 CD OE1 OE2 REMARK 470 ARG A 29 CD NE CZ NH1 NH2 REMARK 470 LYS A 85 CD CE NZ REMARK 470 LYS A 103 CD CE NZ REMARK 470 ARG A 184 CZ NH1 NH2 REMARK 470 ARG B 29 CD NE CZ NH1 NH2 REMARK 470 GLU B 68 OE1 OE2 REMARK 470 LYS B 103 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 68 -124.17 55.34 REMARK 500 GLU A 68 -118.25 43.85 REMARK 500 THR A 80 -6.54 77.11 REMARK 500 SER A 118 -118.36 59.31 REMARK 500 ALA B 53 79.26 -150.70 REMARK 500 GLU B 68 -121.48 54.20 REMARK 500 SER B 118 -113.98 59.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 233 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377848 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3B5E A 1 222 UNP Q983D6 Q983D6_RHILO 1 222 DBREF 3B5E B 1 222 UNP Q983D6 Q983D6_RHILO 1 222 SEQADV 3B5E GLY A 0 UNP Q983D6 EXPRESSION TAG SEQADV 3B5E GLY B 0 UNP Q983D6 EXPRESSION TAG SEQRES 1 A 223 GLY MSE ILE GLY ASP GLY ILE GLU ASN SER PRO LEU LEU SEQRES 2 A 223 THR ASP LEU ALA PHE PRO TYR ARG LEU LEU GLY ALA GLY SEQRES 3 A 223 LYS GLU SER ARG GLU CYS LEU PHE LEU LEU HIS GLY SER SEQRES 4 A 223 GLY VAL ASP GLU THR THR LEU VAL PRO LEU ALA ARG ARG SEQRES 5 A 223 ILE ALA PRO THR ALA THR LEU VAL ALA ALA ARG GLY ARG SEQRES 6 A 223 ILE PRO GLN GLU ASP GLY PHE ARG TRP PHE GLU ARG ILE SEQRES 7 A 223 ASP PRO THR ARG PHE GLU GLN LYS SER ILE LEU ALA GLU SEQRES 8 A 223 THR ALA ALA PHE ALA ALA PHE THR ASN GLU ALA ALA LYS SEQRES 9 A 223 ARG HIS GLY LEU ASN LEU ASP HIS ALA THR PHE LEU GLY SEQRES 10 A 223 TYR SER ASN GLY ALA ASN LEU VAL SER SER LEU MSE LEU SEQRES 11 A 223 LEU HIS PRO GLY ILE VAL ARG LEU ALA ALA LEU LEU ARG SEQRES 12 A 223 PRO MSE PRO VAL LEU ASP HIS VAL PRO ALA THR ASP LEU SEQRES 13 A 223 ALA GLY ILE ARG THR LEU ILE ILE ALA GLY ALA ALA ASP SEQRES 14 A 223 GLU THR TYR GLY PRO PHE VAL PRO ALA LEU VAL THR LEU SEQRES 15 A 223 LEU SER ARG HIS GLY ALA GLU VAL ASP ALA ARG ILE ILE SEQRES 16 A 223 PRO SER GLY HIS ASP ILE GLY ASP PRO ASP ALA ALA ILE SEQRES 17 A 223 VAL ARG GLN TRP LEU ALA GLY PRO ILE ALA ILE ALA GLN SEQRES 18 A 223 ALA ASP SEQRES 1 B 223 GLY MSE ILE GLY ASP GLY ILE GLU ASN SER PRO LEU LEU SEQRES 2 B 223 THR ASP LEU ALA PHE PRO TYR ARG LEU LEU GLY ALA GLY SEQRES 3 B 223 LYS GLU SER ARG GLU CYS LEU PHE LEU LEU HIS GLY SER SEQRES 4 B 223 GLY VAL ASP GLU THR THR LEU VAL PRO LEU ALA ARG ARG SEQRES 5 B 223 ILE ALA PRO THR ALA THR LEU VAL ALA ALA ARG GLY ARG SEQRES 6 B 223 ILE PRO GLN GLU ASP GLY PHE ARG TRP PHE GLU ARG ILE SEQRES 7 B 223 ASP PRO THR ARG PHE GLU GLN LYS SER ILE LEU ALA GLU SEQRES 8 B 223 THR ALA ALA PHE ALA ALA PHE THR ASN GLU ALA ALA LYS SEQRES 9 B 223 ARG HIS GLY LEU ASN LEU ASP HIS ALA THR PHE LEU GLY SEQRES 10 B 223 TYR SER ASN GLY ALA ASN LEU VAL SER SER LEU MSE LEU SEQRES 11 B 223 LEU HIS PRO GLY ILE VAL ARG LEU ALA ALA LEU LEU ARG SEQRES 12 B 223 PRO MSE PRO VAL LEU ASP HIS VAL PRO ALA THR ASP LEU SEQRES 13 B 223 ALA GLY ILE ARG THR LEU ILE ILE ALA GLY ALA ALA ASP SEQRES 14 B 223 GLU THR TYR GLY PRO PHE VAL PRO ALA LEU VAL THR LEU SEQRES 15 B 223 LEU SER ARG HIS GLY ALA GLU VAL ASP ALA ARG ILE ILE SEQRES 16 B 223 PRO SER GLY HIS ASP ILE GLY ASP PRO ASP ALA ALA ILE SEQRES 17 B 223 VAL ARG GLN TRP LEU ALA GLY PRO ILE ALA ILE ALA GLN SEQRES 18 B 223 ALA ASP MODRES 3B5E MSE A 128 MET SELENOMETHIONINE MODRES 3B5E MSE A 144 MET SELENOMETHIONINE MODRES 3B5E MSE B 128 MET SELENOMETHIONINE MODRES 3B5E MSE B 144 MET SELENOMETHIONINE HET MSE A 128 8 HET MSE A 144 8 HET MSE B 128 8 HET MSE B 144 8 HET SO4 A 223 5 HET EDO A 224 4 HET EDO A 225 4 HET EDO A 226 4 HET EDO A 227 4 HET EDO A 228 4 HET EDO A 229 4 HET EDO A 230 4 HET EDO A 231 4 HET EDO A 232 4 HET EDO A 233 4 HET EDO A 234 4 HET SO4 B 223 5 HET EDO B 224 4 HET EDO B 225 4 HET EDO B 226 4 HET EDO B 227 4 HET EDO B 228 4 HET EDO B 229 4 HET EDO B 230 4 HET EDO B 231 4 HET EDO B 232 4 HET EDO B 233 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 EDO 21(C2 H6 O2) FORMUL 26 HOH *482(H2 O) HELIX 1 1 LEU A 45 ALA A 53 1 9 HELIX 2 2 GLU A 83 GLY A 106 1 24 HELIX 3 3 ASN A 108 ASP A 110 5 3 HELIX 4 4 SER A 118 HIS A 131 1 14 HELIX 5 5 TYR A 171 PRO A 173 5 3 HELIX 6 6 PHE A 174 HIS A 185 1 12 HELIX 7 7 GLY A 201 GLY A 214 1 14 HELIX 8 8 LEU B 45 ALA B 53 1 9 HELIX 9 9 GLU B 83 GLY B 106 1 24 HELIX 10 10 ASN B 108 ASP B 110 5 3 HELIX 11 11 SER B 118 HIS B 131 1 14 HELIX 12 12 TYR B 171 PRO B 173 5 3 HELIX 13 13 PHE B 174 HIS B 185 1 12 HELIX 14 14 GLY B 201 GLY B 214 1 14 SHEET 1 A 7 TYR A 19 LEU A 22 0 SHEET 2 A 7 THR A 57 ALA A 61 -1 O ALA A 60 N ARG A 20 SHEET 3 A 7 CYS A 31 LEU A 35 1 N LEU A 32 O VAL A 59 SHEET 4 A 7 ALA A 112 TYR A 117 1 O LEU A 115 N PHE A 33 SHEET 5 A 7 LEU A 137 LEU A 141 1 O ALA A 139 N PHE A 114 SHEET 6 A 7 ARG A 159 GLY A 165 1 O LEU A 161 N LEU A 140 SHEET 7 A 7 GLU A 188 ILE A 194 1 O ARG A 192 N ALA A 164 SHEET 1 B 2 ILE A 65 GLN A 67 0 SHEET 2 B 2 GLY A 70 ARG A 72 -1 O GLY A 70 N GLN A 67 SHEET 1 C 2 ARG A 76 ASP A 78 0 SHEET 2 C 2 ARG A 81 PHE A 82 -1 O ARG A 81 N ILE A 77 SHEET 1 D 7 TYR B 19 LEU B 22 0 SHEET 2 D 7 THR B 57 ALA B 61 -1 O LEU B 58 N LEU B 22 SHEET 3 D 7 CYS B 31 LEU B 35 1 N LEU B 34 O VAL B 59 SHEET 4 D 7 ALA B 112 TYR B 117 1 O LEU B 115 N PHE B 33 SHEET 5 D 7 LEU B 137 LEU B 141 1 O LEU B 141 N GLY B 116 SHEET 6 D 7 ARG B 159 GLY B 165 1 O LEU B 161 N LEU B 140 SHEET 7 D 7 GLU B 188 ILE B 194 1 O ARG B 192 N ALA B 164 SHEET 1 E 2 ILE B 65 GLN B 67 0 SHEET 2 E 2 GLY B 70 ARG B 72 -1 O GLY B 70 N GLN B 67 SHEET 1 F 2 ARG B 76 ASP B 78 0 SHEET 2 F 2 ARG B 81 PHE B 82 -1 O ARG B 81 N ILE B 77 LINK C LEU A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N LEU A 129 1555 1555 1.33 LINK C PRO A 143 N MSE A 144 1555 1555 1.32 LINK C MSE A 144 N PRO A 145 1555 1555 1.35 LINK C LEU B 127 N MSE B 128 1555 1555 1.32 LINK C MSE B 128 N LEU B 129 1555 1555 1.33 LINK C PRO B 143 N MSE B 144 1555 1555 1.32 LINK C MSE B 144 N PRO B 145 1555 1555 1.35 SITE 1 AC1 10 SER B 38 ARG B 72 ARG B 76 PHE B 82 SITE 2 AC1 10 ASN B 119 EDO B 226 HOH B 288 HOH B 317 SITE 3 AC1 10 HOH B 355 HOH B 356 SITE 1 AC2 11 SER A 38 ARG A 72 ARG A 76 PHE A 82 SITE 2 AC2 11 ASN A 119 EDO A 229 HOH A 239 HOH A 242 SITE 3 AC2 11 HOH A 254 HOH A 259 HOH A 429 SITE 1 AC3 10 HOH A 322 HOH A 388 ARG B 29 GLU B 30 SITE 2 AC3 10 CYS B 31 THR B 57 GLY B 106 LEU B 107 SITE 3 AC3 10 ASN B 108 HOH B 342 SITE 1 AC4 2 LEU A 88 ILE B 6 SITE 1 AC5 2 GLN A 67 GLU A 68 SITE 1 AC6 3 PRO B 54 ARG B 209 HOH B 251 SITE 1 AC7 4 GLY A 197 HIS A 198 ASP A 199 HOH A 352 SITE 1 AC8 6 LEU A 181 ARG A 184 HIS A 185 HOH A 347 SITE 2 AC8 6 HOH A 375 HOH A 396 SITE 1 AC9 4 THR A 153 HIS A 185 HOH A 395 HOH A 432 SITE 1 BC1 8 SER B 118 ASN B 119 ASN B 122 ARG B 142 SITE 2 BC1 8 PRO B 143 MSE B 144 TYR B 171 SO4 B 223 SITE 1 BC2 6 GLY B 23 LYS B 26 ARG B 50 PRO B 54 SITE 2 BC2 6 HOH B 358 HOH B 359 SITE 1 BC3 7 SER A 118 ASN A 119 ASN A 122 ARG A 142 SITE 2 BC3 7 PRO A 143 MSE A 144 SO4 A 223 SITE 1 BC4 6 GLY A 23 LYS A 26 ARG A 50 PRO A 54 SITE 2 BC4 6 HOH A 311 HOH A 385 SITE 1 BC5 2 ARG A 62 HOH A 473 SITE 1 BC6 5 TYR A 117 HOH A 247 HOH A 257 HOH A 378 SITE 2 BC6 5 HOH A 391 SITE 1 BC7 4 ARG B 159 TRP B 211 LEU B 212 HOH B 450 SITE 1 BC8 4 TYR B 117 HOH B 259 HOH B 337 HOH B 422 SITE 1 BC9 1 ARG B 184 SITE 1 CC1 5 PRO B 145 VAL B 146 LEU B 147 ASP B 148 SITE 2 CC1 5 HOH B 322 SITE 1 CC2 4 HOH A 261 HOH A 388 HOH A 406 HOH A 447 SITE 1 CC3 5 PHE A 82 GLU A 83 GLN A 84 LYS A 85 SITE 2 CC3 5 HOH A 421 SITE 1 CC4 3 GLU B 7 ASN B 8 SER B 9 SITE 1 CC5 6 PRO A 195 SER B 183 ALA B 187 GLU B 188 SITE 2 CC5 6 VAL B 189 HOH B 467 CRYST1 47.160 105.000 123.620 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021204 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008089 0.00000