data_3B7V # _entry.id 3B7V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3B7V pdb_00003b7v 10.2210/pdb3b7v/pdb RCSB RCSB045188 ? ? WWPDB D_1000045188 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3B80 _pdbx_database_related.details 'HIV-1 protease mutant I54V complexed with gem-diol-amine intermediate NLLTQI' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3B7V _pdbx_database_status.recvd_initial_deposition_date 2007-10-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kovalevsky, A.Y.' 1 'Chumanevich, A.A.' 2 'Weber, I.T.' 3 # _citation.id primary _citation.title ;Caught in the Act: The 1.5 A Resolution Crystal Structures of the HIV-1 Protease and the I54V Mutant Reveal a Tetrahedral Reaction Intermediate. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 46 _citation.page_first 14854 _citation.page_last 14864 _citation.year 2007 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18052235 _citation.pdbx_database_id_DOI 10.1021/bi700822g # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kovalevsky, A.Y.' 1 ? primary 'Chumanevich, A.A.' 2 ? primary 'Liu, F.' 3 ? primary 'Louis, J.M.' 4 ? primary 'Weber, I.T.' 5 ? # _cell.entry_id 3B7V _cell.length_a 58.304 _cell.length_b 86.121 _cell.length_c 46.307 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3B7V _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Protease 10740.677 2 3.4.23.16 'K507Q, I533L, I563L, A567C, A595C' 'UNP residues 501-599' ? 2 polymer man peptide 718.839 1 ? ? 'self proteolytic product of HIV-1 protease' ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 6 water nat water 18.015 172 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name RETROPEPSIN # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF ; ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF ; A,B ? 2 'polypeptide(L)' no yes 'NL(LNT)QI' NLXQI C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 ILE n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 ILE n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 ALA n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 ALA n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n 2 1 ASN n 2 2 LEU n 2 3 LNT n 2 4 GLN n 2 5 ILE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Lentivirus gag-pol 'Human immunodeficiency virus 1' 'BH5 ISOLATE' ? ? ? ? 'Human immunodeficiency virus type 1 BH10' 11678 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? PET11A ? ? 2 1 sample ? ? ? ? Lentivirus gag-pol 'Human immunodeficiency virus 1' 'BH5 ISOLATE' ? ? ? ? 'Human immunodeficiency virus type 1 BH10' 11678 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? PET11A ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP POL_HV1B5 P04587 1 ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; 501 ? 2 PDB 3B7V 3B7V 2 NLXQI 201 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3B7V A 1 ? 99 ? P04587 501 ? 599 ? 1 99 2 1 3B7V B 1 ? 99 ? P04587 501 ? 599 ? 101 199 3 2 3B7V C 1 ? 5 ? 3B7V 201 ? 206 ? 201 206 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3B7V LYS A 7 ? UNP P04587 GLN 507 'engineered mutation' 7 1 1 3B7V ILE A 33 ? UNP P04587 LEU 533 'engineered mutation' 33 2 1 3B7V ILE A 63 ? UNP P04587 LEU 563 'engineered mutation' 63 3 1 3B7V ALA A 67 ? UNP P04587 CYS 567 'engineered mutation' 67 4 1 3B7V ALA A 95 ? UNP P04587 CYS 595 'engineered mutation' 95 5 2 3B7V LYS B 7 ? UNP P04587 GLN 507 'engineered mutation' 107 6 2 3B7V ILE B 33 ? UNP P04587 LEU 533 'engineered mutation' 133 7 2 3B7V ILE B 63 ? UNP P04587 LEU 563 'engineered mutation' 163 8 2 3B7V ALA B 67 ? UNP P04587 CYS 567 'engineered mutation' 167 9 2 3B7V ALA B 95 ? UNP P04587 CYS 595 'engineered mutation' 195 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LNT peptide-like . 'N-[(2S)-2-amino-1,1-dihydroxy-4-methylpentyl]-L-threonine' ? 'C10 H22 N2 O5' 250.292 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3B7V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_percent_sol 53.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;50mM sodium phosphate/100mM sodium citrate, 10% NaCl (w/w), 2.5% glycerol (v/v), pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3B7V _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 1.46 _reflns.d_resolution_low 50.0 _reflns.number_all 40494 _reflns.number_obs 32850 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3B7V _refine.ls_number_reflns_obs 32850 _refine.ls_number_reflns_all 40494 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10 _refine.ls_d_res_high 1.46 _refine.ls_percent_reflns_obs 97.6 _refine.ls_R_factor_obs 0.1521 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.2121 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2006 _refine.ls_number_parameters 16443 _refine.ls_number_restraints 20980 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF)' _refine.pdbx_starting_model 'PDB entry 2IEN' _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3B7V _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 18 _refine_analyze.occupancy_sum_hydrogen 1618.00 _refine_analyze.occupancy_sum_non_hydrogen 1715.20 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1562 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 172 _refine_hist.number_atoms_total 1744 _refine_hist.d_res_high 1.46 _refine_hist.d_res_low 10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.030 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0267 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.001 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.001 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.013 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.063 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.083 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 3B7V _pdbx_refine.R_factor_all_no_cutoff 0.1554 _pdbx_refine.R_factor_obs_no_cutoff 0.1521 _pdbx_refine.free_R_factor_no_cutoff 0.2121 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 2006 _pdbx_refine.R_factor_all_4sig_cutoff 0.1382 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1348 _pdbx_refine.free_R_factor_4sig_cutoff 0.196 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1654 _pdbx_refine.number_reflns_obs_4sig_cutoff 32850 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 3B7V _struct.title 'HIV-1 protease complexed with gem-diol-amine tetrahedral intermediate NLLTQI' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B7V _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 6 ? # _struct_biol.id 1 _struct_biol.details ;The authors state that the biological assembly is composed of the HIV-1 protease dimer, complexed with its substrate, the gem-diol-amine tetrahedral intermediate peptide NLLTQI ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLN A 92 ? GLY A 94 ? GLN A 92 GLY A 94 5 ? 3 HELX_P HELX_P3 3 GLY B 86 ? THR B 91 ? GLY B 186 THR B 191 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C LEU 2 C ? ? ? 1_555 C LNT 3 N14 ? ? C LEU 202 C LNT 203 1_555 ? ? ? ? ? ? ? 1.367 ? ? metalc1 metalc ? ? A ASP 60 O ? ? ? 1_555 D NA . NA ? ? A ASP 60 A NA 901 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc2 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 901 A HOH 1010 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc3 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 901 A HOH 1023 1_555 ? ? ? ? ? ? ? 2.541 ? ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 901 A HOH 1123 1_555 ? ? ? ? ? ? ? 2.413 ? ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 901 A HOH 1124 1_555 ? ? ? ? ? ? ? 2.965 ? ? metalc6 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 901 A HOH 1125 1_555 ? ? ? ? ? ? ? 2.287 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 196 ASN B 198 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 102 ILE B 103 B 1 TRP A 42 ? GLY A 49 ? TRP A 42 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? ILE A 33 ? VAL A 32 ILE A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 143 GLY B 149 C 2 GLY B 52 ? ILE B 66 ? GLY B 152 ILE B 166 C 3 HIS B 69 ? VAL B 77 ? HIS B 169 VAL B 177 C 4 VAL B 32 ? ILE B 33 ? VAL B 132 ILE B 133 C 5 ILE B 84 ? ILE B 85 ? ILE B 184 ILE B 185 C 6 GLN B 18 ? LEU B 24 ? GLN B 118 LEU B 124 C 7 LEU B 10 ? ILE B 15 ? LEU B 110 ILE B 115 C 8 GLY B 52 ? ILE B 66 ? GLY B 152 ILE B 166 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 197 A 2 3 O ASN B 98 ? O ASN B 198 N THR A 96 ? N THR A 96 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 103 B 1 2 N LYS A 45 ? N LYS A 45 O VAL A 56 ? O VAL A 56 B 2 3 N ILE A 66 ? N ILE A 66 O HIS A 69 ? O HIS A 69 B 3 4 O LEU A 76 ? O LEU A 76 N ILE A 33 ? N ILE A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 143 O GLN B 58 ? O GLN B 158 C 2 3 N ILE B 66 ? N ILE B 166 O HIS B 69 ? O HIS B 169 C 3 4 O LEU B 76 ? O LEU B 176 N ILE B 33 ? N ILE B 133 C 4 5 N VAL B 32 ? N VAL B 132 O ILE B 84 ? O ILE B 184 C 5 6 O ILE B 85 ? O ILE B 185 N LEU B 23 ? N LEU B 123 C 6 7 O LYS B 20 ? O LYS B 120 N ILE B 13 ? N ILE B 113 C 7 8 N LYS B 14 ? N LYS B 114 O GLU B 65 ? O GLU B 165 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 901 ? 6 'BINDING SITE FOR RESIDUE NA A 901' AC2 Software A CL 902 ? 3 'BINDING SITE FOR RESIDUE CL A 902' AC3 Software B CL 903 ? 1 'BINDING SITE FOR RESIDUE CL B 903' AC4 Software B CL 904 ? 3 'BINDING SITE FOR RESIDUE CL B 904' AC5 Software B GOL 905 ? 6 'BINDING SITE FOR RESIDUE GOL B 905' AC6 Software ? ? ? ? 32 'BINDING SITE FOR CHAIN C OF PEPTIDE' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 60 ? ASP A 60 . ? 1_555 ? 2 AC1 6 HOH I . ? HOH A 1010 . ? 1_555 ? 3 AC1 6 HOH I . ? HOH A 1023 . ? 1_555 ? 4 AC1 6 HOH I . ? HOH A 1123 . ? 1_555 ? 5 AC1 6 HOH I . ? HOH A 1124 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH A 1125 . ? 1_555 ? 7 AC2 3 THR A 74 ? THR A 74 . ? 1_555 ? 8 AC2 3 ASN A 88 ? ASN A 88 . ? 1_555 ? 9 AC2 3 ARG B 41 ? ARG B 141 . ? 3_556 ? 10 AC3 1 TRP B 6 ? TRP B 106 . ? 1_555 ? 11 AC4 3 THR B 74 ? THR B 174 . ? 1_555 ? 12 AC4 3 ASN B 88 ? ASN B 188 . ? 1_555 ? 13 AC4 3 HOH J . ? HOH B 1060 . ? 1_555 ? 14 AC5 6 GLY A 16 ? GLY A 16 . ? 1_556 ? 15 AC5 6 GLN A 18 ? GLN A 18 . ? 1_556 ? 16 AC5 6 PRO B 1 ? PRO B 101 . ? 1_555 ? 17 AC5 6 ALA B 67 ? ALA B 167 . ? 1_555 ? 18 AC5 6 HIS B 69 ? HIS B 169 . ? 1_555 ? 19 AC5 6 HOH J . ? HOH B 1094 . ? 1_555 ? 20 AC6 32 ARG A 8 ? ARG A 8 . ? 1_555 ? 21 AC6 32 ASP A 25 ? ASP A 25 . ? 1_555 ? 22 AC6 32 GLY A 27 ? GLY A 27 . ? 1_555 ? 23 AC6 32 ALA A 28 ? ALA A 28 . ? 1_555 ? 24 AC6 32 ASP A 29 ? ASP A 29 . ? 1_555 ? 25 AC6 32 ASP A 30 ? ASP A 30 . ? 1_555 ? 26 AC6 32 VAL A 32 ? VAL A 32 . ? 1_555 ? 27 AC6 32 ILE A 47 ? ILE A 47 . ? 1_555 ? 28 AC6 32 GLY A 48 ? GLY A 48 . ? 1_555 ? 29 AC6 32 GLY A 49 ? GLY A 49 . ? 1_555 ? 30 AC6 32 ILE A 50 ? ILE A 50 . ? 1_555 ? 31 AC6 32 VAL A 82 ? VAL A 82 . ? 1_555 ? 32 AC6 32 ILE A 84 ? ILE A 84 . ? 1_555 ? 33 AC6 32 HOH I . ? HOH A 1001 . ? 1_555 ? 34 AC6 32 HOH I . ? HOH A 1036 . ? 1_555 ? 35 AC6 32 ARG B 8 ? ARG B 108 . ? 1_555 ? 36 AC6 32 LEU B 23 ? LEU B 123 . ? 1_555 ? 37 AC6 32 ASP B 25 ? ASP B 125 . ? 1_555 ? 38 AC6 32 GLY B 27 ? GLY B 127 . ? 1_555 ? 39 AC6 32 ALA B 28 ? ALA B 128 . ? 1_555 ? 40 AC6 32 ASP B 29 ? ASP B 129 . ? 1_555 ? 41 AC6 32 ASP B 30 ? ASP B 130 . ? 1_555 ? 42 AC6 32 ILE B 47 ? ILE B 147 . ? 1_555 ? 43 AC6 32 GLY B 48 ? GLY B 148 . ? 1_555 ? 44 AC6 32 GLY B 49 ? GLY B 149 . ? 1_555 ? 45 AC6 32 ILE B 50 ? ILE B 150 . ? 1_555 ? 46 AC6 32 PHE B 53 ? PHE B 153 . ? 1_555 ? 47 AC6 32 PRO B 81 ? PRO B 181 . ? 1_555 ? 48 AC6 32 VAL B 82 ? VAL B 182 . ? 1_555 ? 49 AC6 32 ILE B 84 ? ILE B 184 . ? 1_555 ? 50 AC6 32 HOH K . ? HOH C 1051 . ? 1_555 ? 51 AC6 32 HOH K . ? HOH C 1101 . ? 1_555 ? # _database_PDB_matrix.entry_id 3B7V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3B7V _atom_sites.fract_transf_matrix[1][1] 0.017151 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011612 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021595 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 101 101 PRO PRO B . n B 1 2 GLN 2 102 102 GLN GLN B . n B 1 3 ILE 3 103 103 ILE ILE B . n B 1 4 THR 4 104 104 THR THR B . n B 1 5 LEU 5 105 105 LEU LEU B . n B 1 6 TRP 6 106 106 TRP TRP B . n B 1 7 LYS 7 107 107 LYS LYS B . n B 1 8 ARG 8 108 108 ARG ARG B . n B 1 9 PRO 9 109 109 PRO PRO B . n B 1 10 LEU 10 110 110 LEU LEU B . n B 1 11 VAL 11 111 111 VAL VAL B . n B 1 12 THR 12 112 112 THR THR B . n B 1 13 ILE 13 113 113 ILE ILE B . n B 1 14 LYS 14 114 114 LYS LYS B . n B 1 15 ILE 15 115 115 ILE ILE B . n B 1 16 GLY 16 116 116 GLY GLY B . n B 1 17 GLY 17 117 117 GLY GLY B . n B 1 18 GLN 18 118 118 GLN GLN B . n B 1 19 LEU 19 119 119 LEU LEU B . n B 1 20 LYS 20 120 120 LYS LYS B . n B 1 21 GLU 21 121 121 GLU GLU B . n B 1 22 ALA 22 122 122 ALA ALA B . n B 1 23 LEU 23 123 123 LEU LEU B . n B 1 24 LEU 24 124 124 LEU LEU B . n B 1 25 ASP 25 125 125 ASP ASP B . n B 1 26 THR 26 126 126 THR THR B . n B 1 27 GLY 27 127 127 GLY GLY B . n B 1 28 ALA 28 128 128 ALA ALA B . n B 1 29 ASP 29 129 129 ASP ASP B . n B 1 30 ASP 30 130 130 ASP ASP B . n B 1 31 THR 31 131 131 THR THR B . n B 1 32 VAL 32 132 132 VAL VAL B . n B 1 33 ILE 33 133 133 ILE ILE B . n B 1 34 GLU 34 134 134 GLU GLU B . n B 1 35 GLU 35 135 135 GLU GLU B . n B 1 36 MET 36 136 136 MET MET B . n B 1 37 SER 37 137 137 SER SER B . n B 1 38 LEU 38 138 138 LEU LEU B . n B 1 39 PRO 39 139 139 PRO PRO B . n B 1 40 GLY 40 140 140 GLY GLY B . n B 1 41 ARG 41 141 141 ARG ARG B . n B 1 42 TRP 42 142 142 TRP TRP B . n B 1 43 LYS 43 143 143 LYS LYS B . n B 1 44 PRO 44 144 144 PRO PRO B . n B 1 45 LYS 45 145 145 LYS LYS B . n B 1 46 MET 46 146 146 MET MET B . n B 1 47 ILE 47 147 147 ILE ILE B . n B 1 48 GLY 48 148 148 GLY GLY B . n B 1 49 GLY 49 149 149 GLY GLY B . n B 1 50 ILE 50 150 150 ILE ILE B . n B 1 51 GLY 51 151 151 GLY GLY B . n B 1 52 GLY 52 152 152 GLY GLY B . n B 1 53 PHE 53 153 153 PHE PHE B . n B 1 54 ILE 54 154 154 ILE ILE B . n B 1 55 LYS 55 155 155 LYS LYS B . n B 1 56 VAL 56 156 156 VAL VAL B . n B 1 57 ARG 57 157 157 ARG ARG B . n B 1 58 GLN 58 158 158 GLN GLN B . n B 1 59 TYR 59 159 159 TYR TYR B . n B 1 60 ASP 60 160 160 ASP ASP B . n B 1 61 GLN 61 161 161 GLN GLN B . n B 1 62 ILE 62 162 162 ILE ILE B . n B 1 63 ILE 63 163 163 ILE ILE B . n B 1 64 ILE 64 164 164 ILE ILE B . n B 1 65 GLU 65 165 165 GLU GLU B . n B 1 66 ILE 66 166 166 ILE ILE B . n B 1 67 ALA 67 167 167 ALA ALA B . n B 1 68 GLY 68 168 168 GLY GLY B . n B 1 69 HIS 69 169 169 HIS HIS B . n B 1 70 LYS 70 170 170 LYS LYS B . n B 1 71 ALA 71 171 171 ALA ALA B . n B 1 72 ILE 72 172 172 ILE ILE B . n B 1 73 GLY 73 173 173 GLY GLY B . n B 1 74 THR 74 174 174 THR THR B . n B 1 75 VAL 75 175 175 VAL VAL B . n B 1 76 LEU 76 176 176 LEU LEU B . n B 1 77 VAL 77 177 177 VAL VAL B . n B 1 78 GLY 78 178 178 GLY GLY B . n B 1 79 PRO 79 179 179 PRO PRO B . n B 1 80 THR 80 180 180 THR THR B . n B 1 81 PRO 81 181 181 PRO PRO B . n B 1 82 VAL 82 182 182 VAL VAL B . n B 1 83 ASN 83 183 183 ASN ASN B . n B 1 84 ILE 84 184 184 ILE ILE B . n B 1 85 ILE 85 185 185 ILE ILE B . n B 1 86 GLY 86 186 186 GLY GLY B . n B 1 87 ARG 87 187 187 ARG ARG B . n B 1 88 ASN 88 188 188 ASN ASN B . n B 1 89 LEU 89 189 189 LEU LEU B . n B 1 90 LEU 90 190 190 LEU LEU B . n B 1 91 THR 91 191 191 THR THR B . n B 1 92 GLN 92 192 192 GLN GLN B . n B 1 93 ILE 93 193 193 ILE ILE B . n B 1 94 GLY 94 194 194 GLY GLY B . n B 1 95 ALA 95 195 195 ALA ALA B . n B 1 96 THR 96 196 196 THR THR B . n B 1 97 LEU 97 197 197 LEU LEU B . n B 1 98 ASN 98 198 198 ASN ASN B . n B 1 99 PHE 99 199 199 PHE PHE B . n C 2 1 ASN 1 201 201 ASN THI C . n C 2 2 LEU 2 202 201 LEU THI C . n C 2 3 LNT 3 203 201 LNT THI C . n C 2 4 GLN 4 205 201 GLN THI C . n C 2 5 ILE 5 206 201 ILE THI C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NA 1 901 901 NA NA A . E 4 CL 1 902 902 CL CL A . F 4 CL 1 903 903 CL CL B . G 4 CL 1 904 904 CL CL B . H 5 GOL 1 905 905 GOL GOL B . I 6 HOH 1 1001 1001 HOH HOH A . I 6 HOH 2 1005 1005 HOH HOH A . I 6 HOH 3 1007 1007 HOH HOH A . I 6 HOH 4 1009 1009 HOH HOH A . I 6 HOH 5 1010 1010 HOH HOH A . I 6 HOH 6 1013 1013 HOH HOH A . I 6 HOH 7 1015 1015 HOH HOH A . I 6 HOH 8 1016 1016 HOH HOH A . I 6 HOH 9 1022 1022 HOH HOH A . I 6 HOH 10 1023 1023 HOH HOH A . I 6 HOH 11 1024 1024 HOH HOH A . I 6 HOH 12 1026 1026 HOH HOH A . I 6 HOH 13 1028 1028 HOH HOH A . I 6 HOH 14 1031 1031 HOH HOH A . I 6 HOH 15 1032 1032 HOH HOH A . I 6 HOH 16 1033 1033 HOH HOH A . I 6 HOH 17 1034 1034 HOH HOH A . I 6 HOH 18 1035 1035 HOH HOH A . I 6 HOH 19 1036 1036 HOH HOH A . I 6 HOH 20 1038 1038 HOH HOH A . I 6 HOH 21 1039 1039 HOH HOH A . I 6 HOH 22 1041 1041 HOH HOH A . I 6 HOH 23 1043 1043 HOH HOH A . I 6 HOH 24 1047 1047 HOH HOH A . I 6 HOH 25 1048 1048 HOH HOH A . I 6 HOH 26 1049 1049 HOH HOH A . I 6 HOH 27 1050 1050 HOH HOH A . I 6 HOH 28 1061 1061 HOH HOH A . I 6 HOH 29 1062 1062 HOH HOH A . I 6 HOH 30 1063 1063 HOH HOH A . I 6 HOH 31 1065 1065 HOH HOH A . I 6 HOH 32 1067 1067 HOH HOH A . I 6 HOH 33 1070 1070 HOH HOH A . I 6 HOH 34 1072 1072 HOH HOH A . I 6 HOH 35 1078 1078 HOH HOH A . I 6 HOH 36 1080 1080 HOH HOH A . I 6 HOH 37 1081 1081 HOH HOH A . I 6 HOH 38 1085 1085 HOH HOH A . I 6 HOH 39 1088 1088 HOH HOH A . I 6 HOH 40 1089 1089 HOH HOH A . I 6 HOH 41 1090 1090 HOH HOH A . I 6 HOH 42 1091 1091 HOH HOH A . I 6 HOH 43 1095 1095 HOH HOH A . I 6 HOH 44 1096 1096 HOH HOH A . I 6 HOH 45 1097 1097 HOH HOH A . I 6 HOH 46 1099 1099 HOH HOH A . I 6 HOH 47 1102 1102 HOH HOH A . I 6 HOH 48 1103 1103 HOH HOH A . I 6 HOH 49 1104 1104 HOH HOH A . I 6 HOH 50 1105 1105 HOH HOH A . I 6 HOH 51 1106 1106 HOH HOH A . I 6 HOH 52 1108 1108 HOH HOH A . I 6 HOH 53 1111 1111 HOH HOH A . I 6 HOH 54 1113 1113 HOH HOH A . I 6 HOH 55 1117 1117 HOH HOH A . I 6 HOH 56 1120 1120 HOH HOH A . I 6 HOH 57 1122 1122 HOH HOH A . I 6 HOH 58 1123 1123 HOH HOH A . I 6 HOH 59 1124 1124 HOH HOH A . I 6 HOH 60 1125 1125 HOH HOH A . I 6 HOH 61 1127 1127 HOH HOH A . I 6 HOH 62 1130 1130 HOH HOH A . I 6 HOH 63 1135 1135 HOH HOH A . I 6 HOH 64 1136 1136 HOH HOH A . I 6 HOH 65 1137 1137 HOH HOH A . I 6 HOH 66 1138 1138 HOH HOH A . I 6 HOH 67 1139 1139 HOH HOH A . I 6 HOH 68 1142 1142 HOH HOH A . I 6 HOH 69 1145 1145 HOH HOH A . I 6 HOH 70 1148 1148 HOH HOH A . I 6 HOH 71 1154 1154 HOH HOH A . I 6 HOH 72 1156 1156 HOH HOH A . I 6 HOH 73 1157 1157 HOH HOH A . I 6 HOH 74 1158 1158 HOH HOH A . I 6 HOH 75 1159 1159 HOH HOH A . I 6 HOH 76 1162 1162 HOH HOH A . I 6 HOH 77 1163 1163 HOH HOH A . I 6 HOH 78 1166 1166 HOH HOH A . I 6 HOH 79 1167 1167 HOH HOH A . I 6 HOH 80 1169 1169 HOH HOH A . I 6 HOH 81 1171 1171 HOH HOH A . I 6 HOH 82 1172 1172 HOH HOH A . J 6 HOH 1 1002 1002 HOH HOH B . J 6 HOH 2 1003 1003 HOH HOH B . J 6 HOH 3 1004 1004 HOH HOH B . J 6 HOH 4 1006 1006 HOH HOH B . J 6 HOH 5 1008 1008 HOH HOH B . J 6 HOH 6 1011 1011 HOH HOH B . J 6 HOH 7 1012 1012 HOH HOH B . J 6 HOH 8 1014 1014 HOH HOH B . J 6 HOH 9 1017 1017 HOH HOH B . J 6 HOH 10 1018 1018 HOH HOH B . J 6 HOH 11 1019 1019 HOH HOH B . J 6 HOH 12 1020 1020 HOH HOH B . J 6 HOH 13 1021 1021 HOH HOH B . J 6 HOH 14 1025 1025 HOH HOH B . J 6 HOH 15 1027 1027 HOH HOH B . J 6 HOH 16 1029 1029 HOH HOH B . J 6 HOH 17 1030 1030 HOH HOH B . J 6 HOH 18 1037 1037 HOH HOH B . J 6 HOH 19 1040 1040 HOH HOH B . J 6 HOH 20 1042 1042 HOH HOH B . J 6 HOH 21 1044 1044 HOH HOH B . J 6 HOH 22 1045 1045 HOH HOH B . J 6 HOH 23 1046 1046 HOH HOH B . J 6 HOH 24 1052 1052 HOH HOH B . J 6 HOH 25 1053 1053 HOH HOH B . J 6 HOH 26 1054 1054 HOH HOH B . J 6 HOH 27 1055 1055 HOH HOH B . J 6 HOH 28 1056 1056 HOH HOH B . J 6 HOH 29 1057 1057 HOH HOH B . J 6 HOH 30 1058 1058 HOH HOH B . J 6 HOH 31 1059 1059 HOH HOH B . J 6 HOH 32 1060 1060 HOH HOH B . J 6 HOH 33 1064 1064 HOH HOH B . J 6 HOH 34 1066 1066 HOH HOH B . J 6 HOH 35 1068 1068 HOH HOH B . J 6 HOH 36 1069 1069 HOH HOH B . J 6 HOH 37 1071 1071 HOH HOH B . J 6 HOH 38 1073 1073 HOH HOH B . J 6 HOH 39 1074 1074 HOH HOH B . J 6 HOH 40 1075 1075 HOH HOH B . J 6 HOH 41 1076 1076 HOH HOH B . J 6 HOH 42 1077 1077 HOH HOH B . J 6 HOH 43 1079 1079 HOH HOH B . J 6 HOH 44 1082 1082 HOH HOH B . J 6 HOH 45 1083 1083 HOH HOH B . J 6 HOH 46 1084 1084 HOH HOH B . J 6 HOH 47 1086 1086 HOH HOH B . J 6 HOH 48 1087 1087 HOH HOH B . J 6 HOH 49 1092 1092 HOH HOH B . J 6 HOH 50 1093 1093 HOH HOH B . J 6 HOH 51 1094 1094 HOH HOH B . J 6 HOH 52 1098 1098 HOH HOH B . J 6 HOH 53 1100 1100 HOH HOH B . J 6 HOH 54 1107 1107 HOH HOH B . J 6 HOH 55 1109 1109 HOH HOH B . J 6 HOH 56 1110 1110 HOH HOH B . J 6 HOH 57 1112 1112 HOH HOH B . J 6 HOH 58 1114 1114 HOH HOH B . J 6 HOH 59 1115 1115 HOH HOH B . J 6 HOH 60 1116 1116 HOH HOH B . J 6 HOH 61 1118 1118 HOH HOH B . J 6 HOH 62 1119 1119 HOH HOH B . J 6 HOH 63 1121 1121 HOH HOH B . J 6 HOH 64 1126 1126 HOH HOH B . J 6 HOH 65 1128 1128 HOH HOH B . J 6 HOH 66 1129 1129 HOH HOH B . J 6 HOH 67 1131 1131 HOH HOH B . J 6 HOH 68 1132 1132 HOH HOH B . J 6 HOH 69 1134 1134 HOH HOH B . J 6 HOH 70 1140 1140 HOH HOH B . J 6 HOH 71 1141 1141 HOH HOH B . J 6 HOH 72 1143 1143 HOH HOH B . J 6 HOH 73 1144 1144 HOH HOH B . J 6 HOH 74 1146 1146 HOH HOH B . J 6 HOH 75 1147 1147 HOH HOH B . J 6 HOH 76 1149 1149 HOH HOH B . J 6 HOH 77 1150 1150 HOH HOH B . J 6 HOH 78 1151 1151 HOH HOH B . J 6 HOH 79 1152 1152 HOH HOH B . J 6 HOH 80 1153 1153 HOH HOH B . J 6 HOH 81 1155 1155 HOH HOH B . J 6 HOH 82 1160 1160 HOH HOH B . J 6 HOH 83 1161 1161 HOH HOH B . J 6 HOH 84 1164 1164 HOH HOH B . J 6 HOH 85 1165 1165 HOH HOH B . J 6 HOH 86 1168 1168 HOH HOH B . J 6 HOH 87 1170 1170 HOH HOH B . K 6 HOH 1 1051 1051 HOH HOH C . K 6 HOH 2 1101 1101 HOH HOH C . K 6 HOH 3 1133 1133 HOH HOH C . # _pdbx_molecule_features.prd_id PRD_000321 _pdbx_molecule_features.name 'N-{(2S)-2-[(L-asparaginyl-L-leucyl)amino]-1,1-dihydroxy-4-methylpentyl}-L-threonyl-L-glutaminyl-L-isoleucine' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000321 _pdbx_molecule.asym_id C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 5890 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ASP 60 ? A ASP 60 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1010 ? 1_555 104.3 ? 2 O ? A ASP 60 ? A ASP 60 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1023 ? 1_555 94.0 ? 3 O ? I HOH . ? A HOH 1010 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1023 ? 1_555 72.6 ? 4 O ? A ASP 60 ? A ASP 60 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1123 ? 1_555 98.8 ? 5 O ? I HOH . ? A HOH 1010 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1123 ? 1_555 147.7 ? 6 O ? I HOH . ? A HOH 1023 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1123 ? 1_555 83.7 ? 7 O ? A ASP 60 ? A ASP 60 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1124 ? 1_555 169.3 ? 8 O ? I HOH . ? A HOH 1010 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1124 ? 1_555 85.8 ? 9 O ? I HOH . ? A HOH 1023 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1124 ? 1_555 85.8 ? 10 O ? I HOH . ? A HOH 1123 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1124 ? 1_555 70.5 ? 11 O ? A ASP 60 ? A ASP 60 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1125 ? 1_555 79.4 ? 12 O ? I HOH . ? A HOH 1010 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1125 ? 1_555 105.1 ? 13 O ? I HOH . ? A HOH 1023 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1125 ? 1_555 172.4 ? 14 O ? I HOH . ? A HOH 1123 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1125 ? 1_555 101.0 ? 15 O ? I HOH . ? A HOH 1124 ? 1_555 NA ? D NA . ? A NA 901 ? 1_555 O ? I HOH . ? A HOH 1125 ? 1_555 101.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 1 3 2017-10-25 5 'Structure model' 1 4 2021-10-20 6 'Structure model' 1 5 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' Other 8 4 'Structure model' 'Refinement description' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_struct_conn_angle 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_conn_type 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site 8 6 'Structure model' chem_comp_atom 9 6 'Structure model' chem_comp_bond 10 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.value' 8 5 'Structure model' '_struct_conn.conn_type_id' 9 5 'Structure model' '_struct_conn.id' 10 5 'Structure model' '_struct_conn.pdbx_dist_value' 11 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 20 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 26 5 'Structure model' '_struct_conn_type.id' 27 5 'Structure model' '_struct_ref_seq_dif.details' 28 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 MAR345 'data collection' . ? 3 SCALEPACK 'data scaling' . ? 4 SHELX phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 41 ? ? CZ A ARG 41 ? ? NH1 A ARG 41 ? ? 115.60 120.30 -4.70 0.50 N 2 1 NE A ARG 41 ? ? CZ A ARG 41 ? ? NH2 A ARG 41 ? ? 123.90 120.30 3.60 0.50 N 3 1 NE A ARG 87 ? ? CZ A ARG 87 ? ? NH1 A ARG 87 ? ? 124.51 120.30 4.21 0.50 N 4 1 NE A ARG 87 ? ? CZ A ARG 87 ? ? NH2 A ARG 87 ? ? 117.15 120.30 -3.15 0.50 N 5 1 NE B ARG 141 ? ? CZ B ARG 141 ? ? NH2 B ARG 141 ? ? 116.48 120.30 -3.82 0.50 N 6 1 NE B ARG 187 ? ? CZ B ARG 187 ? ? NH1 B ARG 187 ? ? 124.50 120.30 4.20 0.50 N 7 1 CA C LNT 203 ? ? C C LNT 203 ? ? N C GLN 205 ? ? 137.40 117.20 20.20 2.20 Y # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LNT _pdbx_validate_peptide_omega.auth_asym_id_1 C _pdbx_validate_peptide_omega.auth_seq_id_1 203 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLN _pdbx_validate_peptide_omega.auth_asym_id_2 C _pdbx_validate_peptide_omega.auth_seq_id_2 205 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -112.91 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id LNT _pdbx_validate_main_chain_plane.auth_asym_id C _pdbx_validate_main_chain_plane.auth_seq_id 203 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 40.36 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GOL C1 C N N 138 GOL O1 O N N 139 GOL C2 C N N 140 GOL O2 O N N 141 GOL C3 C N N 142 GOL O3 O N N 143 GOL H11 H N N 144 GOL H12 H N N 145 GOL HO1 H N N 146 GOL H2 H N N 147 GOL HO2 H N N 148 GOL H31 H N N 149 GOL H32 H N N 150 GOL HO3 H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 ILE N N N N 176 ILE CA C N S 177 ILE C C N N 178 ILE O O N N 179 ILE CB C N S 180 ILE CG1 C N N 181 ILE CG2 C N N 182 ILE CD1 C N N 183 ILE OXT O N N 184 ILE H H N N 185 ILE H2 H N N 186 ILE HA H N N 187 ILE HB H N N 188 ILE HG12 H N N 189 ILE HG13 H N N 190 ILE HG21 H N N 191 ILE HG22 H N N 192 ILE HG23 H N N 193 ILE HD11 H N N 194 ILE HD12 H N N 195 ILE HD13 H N N 196 ILE HXT H N N 197 LEU N N N N 198 LEU CA C N S 199 LEU C C N N 200 LEU O O N N 201 LEU CB C N N 202 LEU CG C N N 203 LEU CD1 C N N 204 LEU CD2 C N N 205 LEU OXT O N N 206 LEU H H N N 207 LEU H2 H N N 208 LEU HA H N N 209 LEU HB2 H N N 210 LEU HB3 H N N 211 LEU HG H N N 212 LEU HD11 H N N 213 LEU HD12 H N N 214 LEU HD13 H N N 215 LEU HD21 H N N 216 LEU HD22 H N N 217 LEU HD23 H N N 218 LEU HXT H N N 219 LNT N14 N N N 220 LNT CA C N S 221 LNT C16 C N N 222 LNT C17 C N N 223 LNT C18 C N N 224 LNT C19 C N N 225 LNT C20 C N N 226 LNT O21 O N N 227 LNT O22 O N N 228 LNT N23 N N N 229 LNT C24 C N S 230 LNT C C N N 231 LNT O O N N 232 LNT C27 C N R 233 LNT OG1 O N N 234 LNT C29 C N N 235 LNT H H N N 236 LNT H2 H N N 237 LNT H15 H N N 238 LNT H17 H N N 239 LNT H17A H N N 240 LNT H18 H N N 241 LNT H19 H N N 242 LNT H19A H N N 243 LNT H19B H N N 244 LNT H20 H N N 245 LNT H20A H N N 246 LNT H20B H N N 247 LNT HO21 H N N 248 LNT HO22 H N N 249 LNT HN23 H N N 250 LNT H24 H N N 251 LNT OXT O N N 252 LNT H27 H N N 253 LNT HOG1 H N N 254 LNT H29 H N N 255 LNT H29A H N N 256 LNT H29B H N N 257 LNT HXT H N N 258 LYS N N N N 259 LYS CA C N S 260 LYS C C N N 261 LYS O O N N 262 LYS CB C N N 263 LYS CG C N N 264 LYS CD C N N 265 LYS CE C N N 266 LYS NZ N N N 267 LYS OXT O N N 268 LYS H H N N 269 LYS H2 H N N 270 LYS HA H N N 271 LYS HB2 H N N 272 LYS HB3 H N N 273 LYS HG2 H N N 274 LYS HG3 H N N 275 LYS HD2 H N N 276 LYS HD3 H N N 277 LYS HE2 H N N 278 LYS HE3 H N N 279 LYS HZ1 H N N 280 LYS HZ2 H N N 281 LYS HZ3 H N N 282 LYS HXT H N N 283 MET N N N N 284 MET CA C N S 285 MET C C N N 286 MET O O N N 287 MET CB C N N 288 MET CG C N N 289 MET SD S N N 290 MET CE C N N 291 MET OXT O N N 292 MET H H N N 293 MET H2 H N N 294 MET HA H N N 295 MET HB2 H N N 296 MET HB3 H N N 297 MET HG2 H N N 298 MET HG3 H N N 299 MET HE1 H N N 300 MET HE2 H N N 301 MET HE3 H N N 302 MET HXT H N N 303 NA NA NA N N 304 PHE N N N N 305 PHE CA C N S 306 PHE C C N N 307 PHE O O N N 308 PHE CB C N N 309 PHE CG C Y N 310 PHE CD1 C Y N 311 PHE CD2 C Y N 312 PHE CE1 C Y N 313 PHE CE2 C Y N 314 PHE CZ C Y N 315 PHE OXT O N N 316 PHE H H N N 317 PHE H2 H N N 318 PHE HA H N N 319 PHE HB2 H N N 320 PHE HB3 H N N 321 PHE HD1 H N N 322 PHE HD2 H N N 323 PHE HE1 H N N 324 PHE HE2 H N N 325 PHE HZ H N N 326 PHE HXT H N N 327 PRO N N N N 328 PRO CA C N S 329 PRO C C N N 330 PRO O O N N 331 PRO CB C N N 332 PRO CG C N N 333 PRO CD C N N 334 PRO OXT O N N 335 PRO H H N N 336 PRO HA H N N 337 PRO HB2 H N N 338 PRO HB3 H N N 339 PRO HG2 H N N 340 PRO HG3 H N N 341 PRO HD2 H N N 342 PRO HD3 H N N 343 PRO HXT H N N 344 SER N N N N 345 SER CA C N S 346 SER C C N N 347 SER O O N N 348 SER CB C N N 349 SER OG O N N 350 SER OXT O N N 351 SER H H N N 352 SER H2 H N N 353 SER HA H N N 354 SER HB2 H N N 355 SER HB3 H N N 356 SER HG H N N 357 SER HXT H N N 358 THR N N N N 359 THR CA C N S 360 THR C C N N 361 THR O O N N 362 THR CB C N R 363 THR OG1 O N N 364 THR CG2 C N N 365 THR OXT O N N 366 THR H H N N 367 THR H2 H N N 368 THR HA H N N 369 THR HB H N N 370 THR HG1 H N N 371 THR HG21 H N N 372 THR HG22 H N N 373 THR HG23 H N N 374 THR HXT H N N 375 TRP N N N N 376 TRP CA C N S 377 TRP C C N N 378 TRP O O N N 379 TRP CB C N N 380 TRP CG C Y N 381 TRP CD1 C Y N 382 TRP CD2 C Y N 383 TRP NE1 N Y N 384 TRP CE2 C Y N 385 TRP CE3 C Y N 386 TRP CZ2 C Y N 387 TRP CZ3 C Y N 388 TRP CH2 C Y N 389 TRP OXT O N N 390 TRP H H N N 391 TRP H2 H N N 392 TRP HA H N N 393 TRP HB2 H N N 394 TRP HB3 H N N 395 TRP HD1 H N N 396 TRP HE1 H N N 397 TRP HE3 H N N 398 TRP HZ2 H N N 399 TRP HZ3 H N N 400 TRP HH2 H N N 401 TRP HXT H N N 402 TYR N N N N 403 TYR CA C N S 404 TYR C C N N 405 TYR O O N N 406 TYR CB C N N 407 TYR CG C Y N 408 TYR CD1 C Y N 409 TYR CD2 C Y N 410 TYR CE1 C Y N 411 TYR CE2 C Y N 412 TYR CZ C Y N 413 TYR OH O N N 414 TYR OXT O N N 415 TYR H H N N 416 TYR H2 H N N 417 TYR HA H N N 418 TYR HB2 H N N 419 TYR HB3 H N N 420 TYR HD1 H N N 421 TYR HD2 H N N 422 TYR HE1 H N N 423 TYR HE2 H N N 424 TYR HH H N N 425 TYR HXT H N N 426 VAL N N N N 427 VAL CA C N S 428 VAL C C N N 429 VAL O O N N 430 VAL CB C N N 431 VAL CG1 C N N 432 VAL CG2 C N N 433 VAL OXT O N N 434 VAL H H N N 435 VAL H2 H N N 436 VAL HA H N N 437 VAL HB H N N 438 VAL HG11 H N N 439 VAL HG12 H N N 440 VAL HG13 H N N 441 VAL HG21 H N N 442 VAL HG22 H N N 443 VAL HG23 H N N 444 VAL HXT H N N 445 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LNT N14 CA sing N N 207 LNT N14 H sing N N 208 LNT N14 H2 sing N N 209 LNT CA C17 sing N N 210 LNT CA H15 sing N N 211 LNT C16 CA sing N N 212 LNT C16 O22 sing N N 213 LNT C16 O21 sing N N 214 LNT C17 C18 sing N N 215 LNT C17 H17 sing N N 216 LNT C17 H17A sing N N 217 LNT C18 C20 sing N N 218 LNT C18 H18 sing N N 219 LNT C19 C18 sing N N 220 LNT C19 H19 sing N N 221 LNT C19 H19A sing N N 222 LNT C19 H19B sing N N 223 LNT C20 H20 sing N N 224 LNT C20 H20A sing N N 225 LNT C20 H20B sing N N 226 LNT O21 HO21 sing N N 227 LNT O22 HO22 sing N N 228 LNT N23 C16 sing N N 229 LNT N23 HN23 sing N N 230 LNT C24 N23 sing N N 231 LNT C24 C sing N N 232 LNT C24 H24 sing N N 233 LNT C O doub N N 234 LNT C OXT sing N N 235 LNT C27 C24 sing N N 236 LNT C27 H27 sing N N 237 LNT OG1 C27 sing N N 238 LNT OG1 HOG1 sing N N 239 LNT C29 C27 sing N N 240 LNT C29 H29 sing N N 241 LNT C29 H29A sing N N 242 LNT C29 H29B sing N N 243 LNT OXT HXT sing N N 244 LYS N CA sing N N 245 LYS N H sing N N 246 LYS N H2 sing N N 247 LYS CA C sing N N 248 LYS CA CB sing N N 249 LYS CA HA sing N N 250 LYS C O doub N N 251 LYS C OXT sing N N 252 LYS CB CG sing N N 253 LYS CB HB2 sing N N 254 LYS CB HB3 sing N N 255 LYS CG CD sing N N 256 LYS CG HG2 sing N N 257 LYS CG HG3 sing N N 258 LYS CD CE sing N N 259 LYS CD HD2 sing N N 260 LYS CD HD3 sing N N 261 LYS CE NZ sing N N 262 LYS CE HE2 sing N N 263 LYS CE HE3 sing N N 264 LYS NZ HZ1 sing N N 265 LYS NZ HZ2 sing N N 266 LYS NZ HZ3 sing N N 267 LYS OXT HXT sing N N 268 MET N CA sing N N 269 MET N H sing N N 270 MET N H2 sing N N 271 MET CA C sing N N 272 MET CA CB sing N N 273 MET CA HA sing N N 274 MET C O doub N N 275 MET C OXT sing N N 276 MET CB CG sing N N 277 MET CB HB2 sing N N 278 MET CB HB3 sing N N 279 MET CG SD sing N N 280 MET CG HG2 sing N N 281 MET CG HG3 sing N N 282 MET SD CE sing N N 283 MET CE HE1 sing N N 284 MET CE HE2 sing N N 285 MET CE HE3 sing N N 286 MET OXT HXT sing N N 287 PHE N CA sing N N 288 PHE N H sing N N 289 PHE N H2 sing N N 290 PHE CA C sing N N 291 PHE CA CB sing N N 292 PHE CA HA sing N N 293 PHE C O doub N N 294 PHE C OXT sing N N 295 PHE CB CG sing N N 296 PHE CB HB2 sing N N 297 PHE CB HB3 sing N N 298 PHE CG CD1 doub Y N 299 PHE CG CD2 sing Y N 300 PHE CD1 CE1 sing Y N 301 PHE CD1 HD1 sing N N 302 PHE CD2 CE2 doub Y N 303 PHE CD2 HD2 sing N N 304 PHE CE1 CZ doub Y N 305 PHE CE1 HE1 sing N N 306 PHE CE2 CZ sing Y N 307 PHE CE2 HE2 sing N N 308 PHE CZ HZ sing N N 309 PHE OXT HXT sing N N 310 PRO N CA sing N N 311 PRO N CD sing N N 312 PRO N H sing N N 313 PRO CA C sing N N 314 PRO CA CB sing N N 315 PRO CA HA sing N N 316 PRO C O doub N N 317 PRO C OXT sing N N 318 PRO CB CG sing N N 319 PRO CB HB2 sing N N 320 PRO CB HB3 sing N N 321 PRO CG CD sing N N 322 PRO CG HG2 sing N N 323 PRO CG HG3 sing N N 324 PRO CD HD2 sing N N 325 PRO CD HD3 sing N N 326 PRO OXT HXT sing N N 327 SER N CA sing N N 328 SER N H sing N N 329 SER N H2 sing N N 330 SER CA C sing N N 331 SER CA CB sing N N 332 SER CA HA sing N N 333 SER C O doub N N 334 SER C OXT sing N N 335 SER CB OG sing N N 336 SER CB HB2 sing N N 337 SER CB HB3 sing N N 338 SER OG HG sing N N 339 SER OXT HXT sing N N 340 THR N CA sing N N 341 THR N H sing N N 342 THR N H2 sing N N 343 THR CA C sing N N 344 THR CA CB sing N N 345 THR CA HA sing N N 346 THR C O doub N N 347 THR C OXT sing N N 348 THR CB OG1 sing N N 349 THR CB CG2 sing N N 350 THR CB HB sing N N 351 THR OG1 HG1 sing N N 352 THR CG2 HG21 sing N N 353 THR CG2 HG22 sing N N 354 THR CG2 HG23 sing N N 355 THR OXT HXT sing N N 356 TRP N CA sing N N 357 TRP N H sing N N 358 TRP N H2 sing N N 359 TRP CA C sing N N 360 TRP CA CB sing N N 361 TRP CA HA sing N N 362 TRP C O doub N N 363 TRP C OXT sing N N 364 TRP CB CG sing N N 365 TRP CB HB2 sing N N 366 TRP CB HB3 sing N N 367 TRP CG CD1 doub Y N 368 TRP CG CD2 sing Y N 369 TRP CD1 NE1 sing Y N 370 TRP CD1 HD1 sing N N 371 TRP CD2 CE2 doub Y N 372 TRP CD2 CE3 sing Y N 373 TRP NE1 CE2 sing Y N 374 TRP NE1 HE1 sing N N 375 TRP CE2 CZ2 sing Y N 376 TRP CE3 CZ3 doub Y N 377 TRP CE3 HE3 sing N N 378 TRP CZ2 CH2 doub Y N 379 TRP CZ2 HZ2 sing N N 380 TRP CZ3 CH2 sing Y N 381 TRP CZ3 HZ3 sing N N 382 TRP CH2 HH2 sing N N 383 TRP OXT HXT sing N N 384 TYR N CA sing N N 385 TYR N H sing N N 386 TYR N H2 sing N N 387 TYR CA C sing N N 388 TYR CA CB sing N N 389 TYR CA HA sing N N 390 TYR C O doub N N 391 TYR C OXT sing N N 392 TYR CB CG sing N N 393 TYR CB HB2 sing N N 394 TYR CB HB3 sing N N 395 TYR CG CD1 doub Y N 396 TYR CG CD2 sing Y N 397 TYR CD1 CE1 sing Y N 398 TYR CD1 HD1 sing N N 399 TYR CD2 CE2 doub Y N 400 TYR CD2 HD2 sing N N 401 TYR CE1 CZ doub Y N 402 TYR CE1 HE1 sing N N 403 TYR CE2 CZ sing Y N 404 TYR CE2 HE2 sing N N 405 TYR CZ OH sing N N 406 TYR OH HH sing N N 407 TYR OXT HXT sing N N 408 VAL N CA sing N N 409 VAL N H sing N N 410 VAL N H2 sing N N 411 VAL CA C sing N N 412 VAL CA CB sing N N 413 VAL CA HA sing N N 414 VAL C O doub N N 415 VAL C OXT sing N N 416 VAL CB CG1 sing N N 417 VAL CB CG2 sing N N 418 VAL CB HB sing N N 419 VAL CG1 HG11 sing N N 420 VAL CG1 HG12 sing N N 421 VAL CG1 HG13 sing N N 422 VAL CG2 HG21 sing N N 423 VAL CG2 HG22 sing N N 424 VAL CG2 HG23 sing N N 425 VAL OXT HXT sing N N 426 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 'CHLORIDE ION' CL 5 GLYCEROL GOL 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2IEN _pdbx_initial_refinement_model.details 'PDB entry 2IEN' #