HEADER HYDROLASE 31-OCT-07 3B8B TITLE CRYSTAL STRUCTURE OF CYSQ FROM BACTEROIDES THETAIOTAOMICRON, A TITLE 2 BACTERIAL MEMBER OF THE INOSITOL MONOPHOSPHATASE FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSQ, SULFITE SYNTHESIS PATHWAY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482, DSM 2079, NCTC 10582, E50; SOURCE 5 ATCC: 29148; SOURCE 6 GENE: CYSQ, BT_0411; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS 3'-PHOSPHOADENOSINE-5'-PHOSPHOSULFATE (PAPS) 3'-PHOSPHATASE, CYSQ, KEYWDS 2 SULFITE SYNTHESIS PATHWAY, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 4 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,R.MULLIGAN,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 25-OCT-17 3B8B 1 REMARK REVDAT 3 13-JUL-11 3B8B 1 VERSN REVDAT 2 24-FEB-09 3B8B 1 VERSN REVDAT 1 18-DEC-07 3B8B 0 JRNL AUTH M.E.CUFF,R.MULLIGAN,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF CYSQ FROM BACTEROIDES THETAIOTAOMICRON, A JRNL TITL 2 BACTERIAL MEMBER OF THE INOSITOL MONOPHOSPHATASE FAMILY. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2061 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2777 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.62000 REMARK 3 B12 (A**2) : -0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.907 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2396 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1640 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3287 ; 1.470 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4046 ; 0.903 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 9.361 ; 5.062 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;40.448 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 436 ;13.424 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.351 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 360 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2697 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 470 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 485 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1793 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1150 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1257 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 229 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.138 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.258 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.288 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1797 ; 1.363 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 579 ; 0.232 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2366 ; 1.597 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1063 ; 2.761 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 895 ; 3.610 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 267 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5843 33.6228 10.4721 REMARK 3 T TENSOR REMARK 3 T11: -0.0674 T22: -0.0777 REMARK 3 T33: -0.0493 T12: -0.0039 REMARK 3 T13: 0.0218 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.2299 L22: 1.0006 REMARK 3 L33: 1.0561 L12: -0.4370 REMARK 3 L13: -0.5301 L23: 0.1521 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: -0.0044 S13: -0.1389 REMARK 3 S21: -0.0190 S22: -0.0170 S23: 0.0036 REMARK 3 S31: -0.0079 S32: 0.0479 S33: 0.0366 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923, 0.97860 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41147 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 21.00 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.30 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : 0.37800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 5.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M AMMONIUM SULFATE, 0.1M MES PH REMARK 280 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.92767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.85533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.39150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.31917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.46383 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.92767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 93.85533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 117.31917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 70.39150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 23.46383 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 291 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 GLU A 28 REMARK 465 ARG A 29 REMARK 465 LYS A 30 REMARK 465 HIS A 65 REMARK 465 ARG A 268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 437 O HOH A 535 1.92 REMARK 500 O HOH A 445 O HOH A 525 2.17 REMARK 500 OG SER A 172 O HOH A 557 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 95 47.03 -107.77 REMARK 500 ASN A 191 52.79 -112.80 REMARK 500 SER A 199 -146.71 56.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A -7 LEU A -6 147.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 275 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC81317 RELATED DB: TARGETDB DBREF 3B8B A 1 268 UNP Q8AAQ3 Q8AAQ3_BACTN 1 268 SEQADV 3B8B MSE A -23 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B HIS A -22 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B HIS A -21 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B HIS A -20 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B HIS A -19 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B HIS A -18 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B HIS A -17 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B SER A -16 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B SER A -15 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B GLY A -14 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B VAL A -13 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B ASP A -12 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B LEU A -11 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B GLY A -10 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B THR A -9 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B GLU A -8 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B ASN A -7 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B LEU A -6 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B TYR A -5 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B PHE A -4 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B GLN A -3 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B SER A -2 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B ASN A -1 UNP Q8AAQ3 EXPRESSION TAG SEQADV 3B8B ALA A 0 UNP Q8AAQ3 EXPRESSION TAG SEQRES 1 A 292 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 292 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MSE ALA SEQRES 3 A 292 ALA ILE ASP ALA ALA LEU LYS ALA GLY GLU LYS ILE LEU SEQRES 4 A 292 SER ILE TYR GLU ASP PRO LYS SER ASP PHE GLU ILE GLU SEQRES 5 A 292 ARG LYS ALA ASP ASN SER PRO LEU THR ILE ALA ASP ARG SEQRES 6 A 292 LYS ALA HIS GLU ALA ILE VAL ALA ILE LEU ASN GLU THR SEQRES 7 A 292 PRO PHE PRO VAL LEU SER GLU GLU GLY LYS HIS MSE ASP SEQRES 8 A 292 TYR ALA VAL ARG ARG GLY TRP ASP THR LEU TRP ILE VAL SEQRES 9 A 292 ASP PRO LEU ASP GLY THR LYS GLU PHE ILE LYS ARG ASN SEQRES 10 A 292 GLY GLU PHE THR VAL ASN ILE ALA LEU VAL GLN ASN ALA SEQRES 11 A 292 VAL PRO VAL MSE GLY VAL ILE TYR VAL PRO VAL LYS LYS SEQRES 12 A 292 GLU LEU TYR PHE ALA VAL GLU GLY THR GLY ALA TYR LYS SEQRES 13 A 292 CSO SER GLY ILE VAL GLY LEU GLU ASP GLU GLY VAL THR SEQRES 14 A 292 LEU GLN GLN MSE ILE GLU LYS SER GLU ARG MSE PRO LEU SEQRES 15 A 292 ALA ASP ALA ARG ASP HIS PHE ILE ALA VAL ALA SER ARG SEQRES 16 A 292 SER HIS LEU THR PRO GLU THR GLU THR TYR ILE ALA ASP SEQRES 17 A 292 LEU LYS LYS LYS HIS GLY ASN VAL GLU LEU ILE SER SER SEQRES 18 A 292 GLY SER SER ILE LYS ILE CYS LEU VAL ALA GLU GLY LYS SEQRES 19 A 292 ALA ASP VAL TYR PRO ARG PHE ALA PRO THR MSE GLU TRP SEQRES 20 A 292 ASP THR ALA ALA GLY HIS ALA ILE ALA ARG ALA ALA GLY SEQRES 21 A 292 MSE GLU VAL TYR GLN ALA GLY LYS GLU GLU PRO LEU ARG SEQRES 22 A 292 TYR ASN LYS GLU ASP LEU LEU ASN PRO TRP PHE ILE VAL SEQRES 23 A 292 GLU ALA LYS ARG GLU ARG MODRES 3B8B MSE A 1 MET SELENOMETHIONINE MODRES 3B8B MSE A 66 MET SELENOMETHIONINE MODRES 3B8B MSE A 110 MET SELENOMETHIONINE MODRES 3B8B CSO A 133 CYS S-HYDROXYCYSTEINE MODRES 3B8B MSE A 149 MET SELENOMETHIONINE MODRES 3B8B MSE A 156 MET SELENOMETHIONINE MODRES 3B8B MSE A 221 MET SELENOMETHIONINE MODRES 3B8B MSE A 237 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 66 8 HET MSE A 110 13 HET CSO A 133 7 HET MSE A 149 8 HET MSE A 156 8 HET MSE A 221 8 HET MSE A 237 8 HET SO4 A 269 5 HET SO4 A 270 5 HET SO4 A 271 5 HET SO4 A 272 5 HET SO4 A 273 5 HET SO4 A 274 5 HET CL A 275 1 HETNAM MSE SELENOMETHIONINE HETNAM CSO S-HYDROXYCYSTEINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 CL CL 1- FORMUL 9 HOH *282(H2 O) HELIX 1 1 TYR A -5 ASP A 20 1 26 HELIX 2 2 SER A 34 ASN A 52 1 19 HELIX 3 3 ASP A 67 ARG A 72 1 6 HELIX 4 4 GLY A 85 LYS A 91 1 7 HELIX 5 5 THR A 145 SER A 153 1 9 HELIX 6 6 THR A 175 HIS A 189 1 15 HELIX 7 7 SER A 200 GLU A 208 1 9 HELIX 8 8 GLU A 222 ALA A 235 1 14 SHEET 1 A 7 VAL A 58 SER A 60 0 SHEET 2 A 7 THR A 76 ASP A 84 1 O VAL A 80 N LEU A 59 SHEET 3 A 7 THR A 97 GLN A 104 -1 O VAL A 103 N LEU A 77 SHEET 4 A 7 VAL A 107 VAL A 115 -1 O VAL A 107 N GLN A 104 SHEET 5 A 7 GLU A 120 VAL A 125 -1 O TYR A 122 N ILE A 113 SHEET 6 A 7 GLY A 129 SER A 134 -1 O TYR A 131 N PHE A 123 SHEET 7 A 7 GLU A 154 ARG A 155 -1 O GLU A 154 N LYS A 132 SHEET 1 B 2 PHE A 165 ALA A 169 0 SHEET 2 B 2 VAL A 192 SER A 196 1 O ILE A 195 N ALA A 167 SHEET 1 C 3 TYR A 214 ARG A 216 0 SHEET 2 C 3 PHE A 260 ALA A 264 -1 O PHE A 260 N ARG A 216 SHEET 3 C 3 MSE A 237 GLN A 241 -1 N TYR A 240 O ILE A 261 SHEET 1 D 2 THR A 220 MSE A 221 0 SHEET 2 D 2 LEU A 256 ASN A 257 -1 O ASN A 257 N THR A 220 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C MSE A 66 N ASP A 67 1555 1555 1.33 LINK C VAL A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N GLY A 111 1555 1555 1.33 LINK C LYS A 132 N CSO A 133 1555 1555 1.33 LINK C CSO A 133 N SER A 134 1555 1555 1.33 LINK C GLN A 148 N MSE A 149 1555 1555 1.34 LINK C MSE A 149 N ILE A 150 1555 1555 1.33 LINK C ARG A 155 N MSE A 156 1555 1555 1.32 LINK C MSE A 156 N PRO A 157 1555 1555 1.33 LINK C THR A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N GLU A 222 1555 1555 1.33 LINK C GLY A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N GLU A 238 1555 1555 1.32 CISPEP 1 MSE A 156 PRO A 157 0 1.85 SITE 1 AC1 10 SER A 170 SER A 199 LYS A 202 ARG A 216 SITE 2 AC1 10 HOH A 446 HOH A 453 HOH A 454 HOH A 469 SITE 3 AC1 10 HOH A 473 HOH A 535 SITE 1 AC2 9 ASP A 163 HIS A 164 PHE A 165 HIS A 189 SITE 2 AC2 9 GLY A 190 ASN A 191 HOH A 325 HOH A 363 SITE 3 AC2 9 HOH A 512 SITE 1 AC3 6 HIS A 44 GLY A 63 LYS A 64 HOH A 377 SITE 2 AC3 6 HOH A 474 HOH A 475 SITE 1 AC4 3 ASN A 93 ARG A 171 HOH A 513 SITE 1 AC5 6 LYS A 87 LYS A 91 SER A 172 HIS A 173 SITE 2 AC5 6 HOH A 419 HOH A 509 SITE 1 AC6 4 TYR A 68 LYS A 252 GLU A 253 HOH A 495 SITE 1 AC7 5 LEU A 174 THR A 175 THR A 178 ARG A 216 SITE 2 AC7 5 HOH A 468 CRYST1 93.927 93.927 140.783 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010647 0.006147 0.000000 0.00000 SCALE2 0.000000 0.012294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007103 0.00000