HEADER IMMUNE SYSTEM 06-NOV-07 3B9V TITLE CRYSTAL STRUCTURE OF AN AUTONOMOUS VH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN VARIABLE DOMAIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBODY ENGINEERING, PHAGE DISPLAY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.A.APPLETON,P.A.BARTHELEMY,C.WIESMANN REVDAT 6 30-AUG-23 3B9V 1 REMARK REVDAT 5 25-OCT-17 3B9V 1 REMARK REVDAT 4 13-JUL-11 3B9V 1 VERSN REVDAT 3 24-FEB-09 3B9V 1 VERSN REVDAT 2 19-FEB-08 3B9V 1 JRNL REVDAT 1 20-NOV-07 3B9V 0 JRNL AUTH P.A.BARTHELEMY,H.RAAB,B.A.APPLETON,C.J.BOND,P.WU,C.WIESMANN, JRNL AUTH 2 S.S.SIDHU JRNL TITL COMPREHENSIVE ANALYSIS OF THE FACTORS CONTRIBUTING TO THE JRNL TITL 2 STABILITY AND SOLUBILITY OF AUTONOMOUS HUMAN VH DOMAINS. JRNL REF J.BIOL.CHEM. V. 283 3639 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18045863 JRNL DOI 10.1074/JBC.M708536200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 38187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2023 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2010 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.1430 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3617 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : -0.10000 REMARK 3 B13 (A**2) : 0.38000 REMARK 3 B23 (A**2) : 0.10000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.358 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3756 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2509 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5115 ; 1.467 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6036 ; 0.877 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 6.143 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;30.364 ;22.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 565 ;12.359 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.400 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 537 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4310 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 854 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 508 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2449 ; 0.211 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1794 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2161 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 282 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.034 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.092 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 57 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2949 ; 3.750 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 998 ; 0.721 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3705 ; 4.472 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1811 ; 4.006 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1400 ; 5.093 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7599 5.0641 14.8588 REMARK 3 T TENSOR REMARK 3 T11: -0.0393 T22: -0.0251 REMARK 3 T33: -0.0377 T12: 0.0083 REMARK 3 T13: 0.0011 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.7619 L22: 1.2193 REMARK 3 L33: 1.7201 L12: 0.4246 REMARK 3 L13: -0.1635 L23: -0.1410 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: 0.0186 S13: 0.0065 REMARK 3 S21: 0.0641 S22: 0.0454 S23: 0.0020 REMARK 3 S31: -0.0079 S32: 0.1126 S33: -0.1313 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3647 -7.4094 -9.0496 REMARK 3 T TENSOR REMARK 3 T11: -0.0540 T22: -0.0419 REMARK 3 T33: -0.0495 T12: 0.0048 REMARK 3 T13: 0.0012 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.0893 L22: 1.8731 REMARK 3 L33: 1.8857 L12: 0.1108 REMARK 3 L13: 0.3185 L23: -0.0986 REMARK 3 S TENSOR REMARK 3 S11: 0.0658 S12: 0.0080 S13: -0.0248 REMARK 3 S21: -0.0594 S22: -0.0074 S23: -0.0107 REMARK 3 S31: 0.0270 S32: 0.1169 S33: -0.0584 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 112 REMARK 3 ORIGIN FOR THE GROUP (A): -26.5016 -19.7693 18.7838 REMARK 3 T TENSOR REMARK 3 T11: -0.0522 T22: -0.0268 REMARK 3 T33: -0.0482 T12: -0.0071 REMARK 3 T13: 0.0042 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.7011 L22: 2.5724 REMARK 3 L33: 1.1335 L12: 0.3236 REMARK 3 L13: -0.0764 L23: 0.0685 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: 0.1326 S13: -0.0051 REMARK 3 S21: 0.1153 S22: -0.0178 S23: 0.1581 REMARK 3 S31: -0.0421 S32: -0.0620 S33: 0.0301 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 112 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2060 -31.6110 -5.3480 REMARK 3 T TENSOR REMARK 3 T11: -0.0575 T22: -0.0289 REMARK 3 T33: -0.0527 T12: -0.0048 REMARK 3 T13: 0.0029 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.0524 L22: 1.9494 REMARK 3 L33: 1.1689 L12: -0.4521 REMARK 3 L13: -0.0927 L23: -0.0867 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: 0.1629 S13: 0.0037 REMARK 3 S21: 0.0077 S22: -0.1000 S23: 0.0239 REMARK 3 S31: -0.0105 S32: -0.0297 S33: 0.1028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40233 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 43.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.09700 REMARK 200 FOR SHELL : 13.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1N8Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M SODIUM MALONATE, 0.1 M HEPES, REMARK 280 0.5% JEFFAMINE ED-2001, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 113 REMARK 465 ASP B 98 REMARK 465 GLY B 99 REMARK 465 PHE B 100 REMARK 465 SER B 113 REMARK 465 SER C 113 REMARK 465 ASP D 98 REMARK 465 GLY D 99 REMARK 465 SER D 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 31 O HOH A 1304 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 88 167.89 178.46 REMARK 500 TRP B 95 79.50 -116.37 REMARK 500 ALA C 88 166.62 179.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 3B9V A 1 113 PDB 3B9V 3B9V 1 113 DBREF 3B9V B 1 113 PDB 3B9V 3B9V 1 113 DBREF 3B9V C 1 113 PDB 3B9V 3B9V 1 113 DBREF 3B9V D 1 113 PDB 3B9V 3B9V 1 113 SEQRES 1 A 120 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 120 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 120 PHE ASN ILE LYS ASP THR TYR ILE GLY TRP VAL ARG ARG SEQRES 4 A 120 ALA PRO GLY LYS GLY GLU GLU TRP VAL ALA SER ILE TYR SEQRES 5 A 120 PRO THR ASN GLY TYR THR ARG TYR ALA ASP SER VAL LYS SEQRES 6 A 120 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 A 120 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 120 ALA VAL TYR TYR CYS ALA ARG TRP GLY GLY ASP GLY PHE SEQRES 9 A 120 TYR ALA MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 A 120 VAL SER SER SEQRES 1 B 120 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 120 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 120 PHE ASN ILE LYS ASP THR TYR ILE GLY TRP VAL ARG ARG SEQRES 4 B 120 ALA PRO GLY LYS GLY GLU GLU TRP VAL ALA SER ILE TYR SEQRES 5 B 120 PRO THR ASN GLY TYR THR ARG TYR ALA ASP SER VAL LYS SEQRES 6 B 120 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 B 120 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 B 120 ALA VAL TYR TYR CYS ALA ARG TRP GLY GLY ASP GLY PHE SEQRES 9 B 120 TYR ALA MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 B 120 VAL SER SER SEQRES 1 C 120 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 120 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 120 PHE ASN ILE LYS ASP THR TYR ILE GLY TRP VAL ARG ARG SEQRES 4 C 120 ALA PRO GLY LYS GLY GLU GLU TRP VAL ALA SER ILE TYR SEQRES 5 C 120 PRO THR ASN GLY TYR THR ARG TYR ALA ASP SER VAL LYS SEQRES 6 C 120 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 C 120 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 C 120 ALA VAL TYR TYR CYS ALA ARG TRP GLY GLY ASP GLY PHE SEQRES 9 C 120 TYR ALA MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 C 120 VAL SER SER SEQRES 1 D 120 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 120 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 120 PHE ASN ILE LYS ASP THR TYR ILE GLY TRP VAL ARG ARG SEQRES 4 D 120 ALA PRO GLY LYS GLY GLU GLU TRP VAL ALA SER ILE TYR SEQRES 5 D 120 PRO THR ASN GLY TYR THR ARG TYR ALA ASP SER VAL LYS SEQRES 6 D 120 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 D 120 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 D 120 ALA VAL TYR TYR CYS ALA ARG TRP GLY GLY ASP GLY PHE SEQRES 9 D 120 TYR ALA MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 D 120 VAL SER SER FORMUL 5 HOH *405(H2 O) HELIX 1 1 ASN A 28 THR A 32 5 5 HELIX 2 2 THR A 73 LYS A 75 5 3 HELIX 3 3 ARG A 83 THR A 87 5 5 HELIX 4 4 ASN B 28 THR B 32 5 5 HELIX 5 5 ARG B 83 THR B 87 5 5 HELIX 6 6 ASN C 28 THR C 32 5 5 HELIX 7 7 ASP C 61 LYS C 64 5 4 HELIX 8 8 ARG C 83 THR C 87 5 5 HELIX 9 9 ASN D 28 THR D 32 5 5 HELIX 10 10 THR D 73 LYS D 75 5 3 HELIX 11 11 ARG D 83 THR D 87 5 5 SHEET 1 A 4 GLN A 3 SER A 7 0 SHEET 2 A 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 A 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 A 4 PHE A 67 ASP A 72 -1 N THR A 68 O GLN A 81 SHEET 1 B12 THR A 57 TYR A 59 0 SHEET 2 B12 GLU A 45 ILE A 51 -1 N SER A 50 O ARG A 58 SHEET 3 B12 TYR A 33 ARG A 39 -1 N ILE A 34 O ILE A 51 SHEET 4 B12 ALA A 88 TRP A 95 -1 O TYR A 91 N VAL A 37 SHEET 5 B12 THR A 107 VAL A 111 -1 O THR A 107 N TYR A 90 SHEET 6 B12 GLY A 10 VAL A 12 1 N GLY A 10 O THR A 110 SHEET 7 B12 GLY C 10 VAL C 12 -1 O LEU C 11 N LEU A 11 SHEET 8 B12 THR C 107 VAL C 111 1 O THR C 110 N GLY C 10 SHEET 9 B12 ALA C 88 GLY C 96 -1 N TYR C 90 O THR C 107 SHEET 10 B12 TYR C 33 ARG C 39 -1 N VAL C 37 O TYR C 91 SHEET 11 B12 GLU C 46 ILE C 51 -1 O GLU C 46 N ARG C 38 SHEET 12 B12 THR C 57 TYR C 59 -1 O ARG C 58 N SER C 50 SHEET 1 C10 THR A 57 TYR A 59 0 SHEET 2 C10 GLU A 45 ILE A 51 -1 N SER A 50 O ARG A 58 SHEET 3 C10 TYR A 33 ARG A 39 -1 N ILE A 34 O ILE A 51 SHEET 4 C10 ALA A 88 TRP A 95 -1 O TYR A 91 N VAL A 37 SHEET 5 C10 THR A 107 VAL A 111 -1 O THR A 107 N TYR A 90 SHEET 6 C10 GLY A 10 VAL A 12 1 N GLY A 10 O THR A 110 SHEET 7 C10 GLY C 10 VAL C 12 -1 O LEU C 11 N LEU A 11 SHEET 8 C10 THR C 107 VAL C 111 1 O THR C 110 N GLY C 10 SHEET 9 C10 ALA C 88 GLY C 96 -1 N TYR C 90 O THR C 107 SHEET 10 C10 ALA C 100B TRP C 103 -1 O TYR C 102 N ARG C 94 SHEET 1 D 4 GLN B 3 SER B 7 0 SHEET 2 D 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 D 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 D 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLN B 81 SHEET 1 E 6 GLY B 10 VAL B 12 0 SHEET 2 E 6 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 E 6 ALA B 88 TRP B 95 -1 N TYR B 90 O THR B 107 SHEET 4 E 6 TYR B 33 ARG B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 E 6 GLU B 45 ILE B 51 -1 O VAL B 48 N TRP B 36 SHEET 6 E 6 THR B 57 TYR B 59 -1 O ARG B 58 N SER B 50 SHEET 1 F 4 GLY B 10 VAL B 12 0 SHEET 2 F 4 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 F 4 ALA B 88 TRP B 95 -1 N TYR B 90 O THR B 107 SHEET 4 F 4 MET B 100C TRP B 103 -1 O TYR B 102 N ARG B 94 SHEET 1 G 4 GLN C 3 SER C 7 0 SHEET 2 G 4 LEU C 18 SER C 25 -1 O SER C 25 N GLN C 3 SHEET 3 G 4 THR C 77 MET C 82 -1 O MET C 82 N LEU C 18 SHEET 4 G 4 PHE C 67 ASP C 72 -1 N ASP C 72 O THR C 77 SHEET 1 H 4 GLN D 3 SER D 7 0 SHEET 2 H 4 LEU D 18 SER D 25 -1 O ALA D 23 N VAL D 5 SHEET 3 H 4 THR D 77 MET D 82 -1 O MET D 82 N LEU D 18 SHEET 4 H 4 PHE D 67 ASP D 72 -1 N ASP D 72 O THR D 77 SHEET 1 I 6 GLY D 10 VAL D 12 0 SHEET 2 I 6 THR D 107 VAL D 111 1 O THR D 110 N GLY D 10 SHEET 3 I 6 ALA D 88 TRP D 95 -1 N TYR D 90 O THR D 107 SHEET 4 I 6 TYR D 33 ARG D 39 -1 N VAL D 37 O TYR D 91 SHEET 5 I 6 GLU D 45 ILE D 51 -1 O VAL D 48 N TRP D 36 SHEET 6 I 6 THR D 57 TYR D 59 -1 O ARG D 58 N SER D 50 SHEET 1 J 4 GLY D 10 VAL D 12 0 SHEET 2 J 4 THR D 107 VAL D 111 1 O THR D 110 N GLY D 10 SHEET 3 J 4 ALA D 88 TRP D 95 -1 N TYR D 90 O THR D 107 SHEET 4 J 4 MET D 100C TRP D 103 -1 O TYR D 102 N ARG D 94 SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.06 SSBOND 2 CYS B 22 CYS B 92 1555 1555 2.06 SSBOND 3 CYS C 22 CYS C 92 1555 1555 2.04 SSBOND 4 CYS D 22 CYS D 92 1555 1555 2.04 CRYST1 50.915 54.066 54.242 109.97 95.64 118.65 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019641 0.010729 0.007494 0.00000 SCALE2 0.000000 0.021076 0.010469 0.00000 SCALE3 0.000000 0.000000 0.020685 0.00000