HEADER HYDROLASE 09-NOV-07 3BB4 TITLE CRYSTAL STRUCTURE OF TOC33 FROM ARABIDOPSIS THALIANA IN COMPLEX WITH TITLE 2 MG2+ AND GMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: T7I23.11 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-251; COMPND 5 SYNONYM: AT1G02280, AT1G02280/T7I23.11, ATTOC33 PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: COLUMBIA; SOURCE 6 GENE: T7I23.11; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS ROSSMANN FOLD, GTPASE DOMAIN, CHLOROPLAST IMPORT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KOENIG,I.SINNING,E.SCHLEIFF,I.TEWS REVDAT 7 01-NOV-23 3BB4 1 REMARK REVDAT 6 10-NOV-21 3BB4 1 REMARK SEQADV LINK REVDAT 5 12-NOV-14 3BB4 1 KEYWDS REVDAT 4 13-JUL-11 3BB4 1 VERSN REVDAT 3 24-FEB-09 3BB4 1 VERSN REVDAT 2 15-APR-08 3BB4 1 JRNL REVDAT 1 01-APR-08 3BB4 0 JRNL AUTH P.KOENIG,M.OREB,A.HOFLE,S.KALTOFEN,K.RIPPE,I.SINNING, JRNL AUTH 2 E.SCHLEIFF,I.TEWS JRNL TITL THE GTPASE CYCLE OF THE CHLOROPLAST IMPORT RECEPTORS JRNL TITL 2 TOC33/TOC34: IMPLICATIONS FROM MONOMERIC AND DIMERIC JRNL TITL 3 STRUCTURES. JRNL REF STRUCTURE V. 16 585 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18400179 JRNL DOI 10.1016/J.STR.2008.01.008 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0008 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 7461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 366 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 474 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1885 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 69.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.411 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.285 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.329 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1955 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1318 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2654 ; 2.073 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3230 ; 1.359 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 9.626 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;38.202 ;24.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;21.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;26.122 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 305 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2106 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 372 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 443 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1282 ; 0.219 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 894 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 994 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 37 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.280 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1539 ; 1.144 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 487 ; 0.089 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1930 ; 1.325 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 886 ; 1.916 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 722 ; 2.961 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 47.6573 19.9816 5.6150 REMARK 3 T TENSOR REMARK 3 T11: -0.1173 T22: -0.0923 REMARK 3 T33: -0.1584 T12: 0.0623 REMARK 3 T13: 0.0217 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.6704 L22: 3.1954 REMARK 3 L33: 1.4361 L12: -0.7673 REMARK 3 L13: 0.7059 L23: -0.3720 REMARK 3 S TENSOR REMARK 3 S11: -0.0790 S12: -0.0026 S13: 0.1402 REMARK 3 S21: 0.0377 S22: 0.0969 S23: 0.0622 REMARK 3 S31: -0.1674 S32: -0.1274 S33: -0.0180 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 264 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 45.6977 16.0522 17.9229 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.0131 REMARK 3 T33: -0.1959 T12: 0.1158 REMARK 3 T13: 0.1214 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 72.1643 L22: 3.6810 REMARK 3 L33: 5.8315 L12: -10.8142 REMARK 3 L13: 6.9810 L23: -1.8373 REMARK 3 S TENSOR REMARK 3 S11: -1.2005 S12: -2.1073 S13: -0.2228 REMARK 3 S21: 1.1814 S22: 0.7118 S23: 0.3702 REMARK 3 S31: -0.7458 S32: -1.0252 S33: 0.4887 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9746 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7827 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1H65 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG1500, 15% GLYCEROL, PH7.4, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.43950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.78350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.78350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 10.71975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.78350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.78350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.15925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.78350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.78350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 10.71975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.78350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.78350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.15925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.43950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 ARG A 6 REMARK 465 GLN A 68 REMARK 465 ALA A 69 REMARK 465 GLU A 70 REMARK 465 GLY A 71 REMARK 465 ASP A 251 REMARK 465 ALA A 252 REMARK 465 ALA A 253 REMARK 465 ALA A 254 REMARK 465 LEU A 255 REMARK 465 GLU A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 PRO A 166 C - N - CA ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP A 167 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 15 128.79 -32.66 REMARK 500 ASP A 33 -1.76 83.08 REMARK 500 MET A 81 112.02 -160.71 REMARK 500 ASN A 114 -4.90 78.31 REMARK 500 ASP A 127 44.33 -83.22 REMARK 500 LYS A 148 -32.25 -30.61 REMARK 500 ASP A 167 29.96 103.59 REMARK 500 LYS A 191 62.17 -18.75 REMARK 500 ALA A 201 80.71 -14.75 REMARK 500 ARG A 212 6.47 -66.93 REMARK 500 SER A 214 121.35 -21.79 REMARK 500 LYS A 221 113.76 -35.49 REMARK 500 HIS A 249 -95.17 -95.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 96 ALA A 97 -143.95 REMARK 500 PRO A 166 ASP A 167 131.10 REMARK 500 SER A 190 LYS A 191 -128.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 263 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 50 OG REMARK 620 2 GNP A 264 O2B 81.8 REMARK 620 3 GNP A 264 O2G 173.2 91.3 REMARK 620 4 HOH A 265 O 103.2 174.0 83.6 REMARK 620 5 HOH A 266 O 82.6 94.2 98.4 83.3 REMARK 620 6 HOH A 267 O 93.7 87.2 85.5 95.7 175.9 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 264 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BB1 RELATED DB: PDB REMARK 900 RELATED ID: 3BB3 RELATED DB: PDB DBREF 3BB4 A 1 251 UNP O23680 O23680_ARATH 1 251 SEQADV 3BB4 GLU A 181 UNP O23680 SER 181 ENGINEERED MUTATION SEQADV 3BB4 ALA A 252 UNP O23680 EXPRESSION TAG SEQADV 3BB4 ALA A 253 UNP O23680 EXPRESSION TAG SEQADV 3BB4 ALA A 254 UNP O23680 EXPRESSION TAG SEQADV 3BB4 LEU A 255 UNP O23680 EXPRESSION TAG SEQADV 3BB4 GLU A 256 UNP O23680 EXPRESSION TAG SEQADV 3BB4 HIS A 257 UNP O23680 EXPRESSION TAG SEQADV 3BB4 HIS A 258 UNP O23680 EXPRESSION TAG SEQADV 3BB4 HIS A 259 UNP O23680 EXPRESSION TAG SEQADV 3BB4 HIS A 260 UNP O23680 EXPRESSION TAG SEQADV 3BB4 HIS A 261 UNP O23680 EXPRESSION TAG SEQADV 3BB4 HIS A 262 UNP O23680 EXPRESSION TAG SEQRES 1 A 262 MET GLY SER LEU VAL ARG GLU TRP VAL GLY PHE GLN GLN SEQRES 2 A 262 PHE PRO ALA ALA THR GLN GLU LYS LEU ILE GLU PHE PHE SEQRES 3 A 262 GLY LYS LEU LYS GLN LYS ASP MET ASN SER MET THR VAL SEQRES 4 A 262 LEU VAL LEU GLY LYS GLY GLY VAL GLY LYS SER SER THR SEQRES 5 A 262 VAL ASN SER LEU ILE GLY GLU GLN VAL VAL ARG VAL SER SEQRES 6 A 262 PRO PHE GLN ALA GLU GLY LEU ARG PRO VAL MET VAL SER SEQRES 7 A 262 ARG THR MET GLY GLY PHE THR ILE ASN ILE ILE ASP THR SEQRES 8 A 262 PRO GLY LEU VAL GLU ALA GLY TYR VAL ASN HIS GLN ALA SEQRES 9 A 262 LEU GLU LEU ILE LYS GLY PHE LEU VAL ASN ARG THR ILE SEQRES 10 A 262 ASP VAL LEU LEU TYR VAL ASP ARG LEU ASP VAL TYR ARG SEQRES 11 A 262 VAL ASP GLU LEU ASP LYS GLN VAL VAL ILE ALA ILE THR SEQRES 12 A 262 GLN THR PHE GLY LYS GLU ILE TRP CYS LYS THR LEU LEU SEQRES 13 A 262 VAL LEU THR HIS ALA GLN PHE SER PRO PRO ASP GLU LEU SEQRES 14 A 262 SER TYR GLU THR PHE SER SER LYS ARG SER ASP GLU LEU SEQRES 15 A 262 LEU LYS THR ILE ARG ALA GLY SER LYS MET ARG LYS GLN SEQRES 16 A 262 GLU PHE GLU ASP SER ALA ILE ALA VAL VAL TYR ALA GLU SEQRES 17 A 262 ASN SER GLY ARG CYS SER LYS ASN ASP LYS ASP GLU LYS SEQRES 18 A 262 ALA LEU PRO ASN GLY GLU ALA TRP ILE PRO ASN LEU VAL SEQRES 19 A 262 LYS ALA ILE THR ASP VAL ALA THR ASN GLN ARG LYS ALA SEQRES 20 A 262 ILE HIS VAL ASP ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 21 A 262 HIS HIS HET MG A 263 1 HET GNP A 264 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 2 MG MG 2+ FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 HOH *27(H2 O) HELIX 1 1 TRP A 8 GLN A 13 5 6 HELIX 2 2 PRO A 15 LYS A 30 1 16 HELIX 3 3 GLY A 48 GLY A 58 1 11 HELIX 4 4 ASN A 101 PHE A 111 1 11 HELIX 5 5 ASP A 132 THR A 145 1 14 HELIX 6 6 LYS A 148 CYS A 152 5 5 HELIX 7 7 SER A 170 SER A 190 1 21 HELIX 8 8 ARG A 193 ASP A 199 1 7 HELIX 9 9 ALA A 228 ALA A 241 1 14 SHEET 1 A 6 VAL A 75 MET A 81 0 SHEET 2 A 6 PHE A 84 ASP A 90 -1 O ILE A 86 N ARG A 79 SHEET 3 A 6 SER A 36 GLY A 43 1 N VAL A 39 O ILE A 89 SHEET 4 A 6 VAL A 119 ARG A 125 1 O VAL A 119 N LEU A 40 SHEET 5 A 6 THR A 154 THR A 159 1 O VAL A 157 N TYR A 122 SHEET 6 A 6 ALA A 203 TYR A 206 1 O VAL A 205 N LEU A 158 SHEET 1 B 2 ARG A 115 ILE A 117 0 SHEET 2 B 2 ILE A 248 VAL A 250 -1 O VAL A 250 N ARG A 115 LINK OG SER A 50 MG MG A 263 1555 1555 2.19 LINK MG MG A 263 O2B GNP A 264 1555 1555 2.06 LINK MG MG A 263 O2G GNP A 264 1555 1555 2.00 LINK MG MG A 263 O HOH A 265 1555 1555 2.10 LINK MG MG A 263 O HOH A 266 1555 1555 2.09 LINK MG MG A 263 O HOH A 267 1555 1555 2.13 CISPEP 1 LEU A 72 ARG A 73 0 -8.37 CISPEP 2 ALA A 97 GLY A 98 0 14.62 CISPEP 3 ASP A 167 GLU A 168 0 -12.35 SITE 1 AC1 4 SER A 50 HOH A 265 HOH A 266 HOH A 267 SITE 1 AC2 17 GLY A 46 GLY A 48 LYS A 49 SER A 50 SITE 2 AC2 17 SER A 51 SER A 65 PRO A 66 GLY A 93 SITE 3 AC2 17 HIS A 160 GLU A 208 ASN A 209 SER A 210 SITE 4 AC2 17 HOH A 265 HOH A 266 HOH A 267 HOH A 273 SITE 5 AC2 17 HOH A 278 CRYST1 121.567 121.567 42.879 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023321 0.00000