HEADER HYDROLASE 09-NOV-07 3BBA TITLE STRUCTURE OF ACTIVE WILD-TYPE PREVOTELLA INTERMEDIA INTERPAIN A TITLE 2 CYSTEINE PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERPAIN A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 156-403; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PREVOTELLA INTERMEDIA; SOURCE 3 ORGANISM_TAXID: 28131; SOURCE 4 GENE: PIN0048; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24D(+) KEYWDS PREVOTELLA INTERMEDIA, ZYMOGEN ACTIVATION, CYSTEINE PROTEASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MALLORQUI-FERNANDEZ,S.P.MANANDHAR,G.MALLORQUI-FERNANDEZ,I.USON, AUTHOR 2 K.WAWRZONEK,T.KANTYKA,M.SOLA,I.B.THOGERSEN,J.J.ENGHILD,J.POTEMPA, AUTHOR 3 F.X.GOMIS-RUTH REVDAT 6 01-NOV-23 3BBA 1 SEQADV REVDAT 5 13-JUL-11 3BBA 1 VERSN REVDAT 4 24-FEB-09 3BBA 1 VERSN REVDAT 3 19-FEB-08 3BBA 1 COMPND REMARK DBREF SEQADV REVDAT 2 12-FEB-08 3BBA 1 JRNL REMARK REVDAT 1 20-NOV-07 3BBA 0 JRNL AUTH N.MALLORQUI-FERNANDEZ,S.P.MANANDHAR,G.MALLORQUI-FERNANDEZ, JRNL AUTH 2 I.USON,K.WAWRZONEK,T.KANTYKA,M.SOLA,I.B.THOGERSEN, JRNL AUTH 3 J.J.ENGHILD,J.POTEMPA,F.X.GOMIS-RUTH JRNL TITL A NEW AUTOCATALYTIC ACTIVATION MECHANISM FOR CYSTEINE JRNL TITL 2 PROTEASES REVEALED BY PREVOTELLA INTERMEDIA INTERPAIN A JRNL REF J.BIOL.CHEM. V. 283 2871 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 17993455 JRNL DOI 10.1074/JBC.M708481200 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 570 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 807 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3797 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 46.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.01000 REMARK 3 B22 (A**2) : 3.01000 REMARK 3 B33 (A**2) : -6.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.492 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.418 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 60.070 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3901 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2506 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5314 ; 1.310 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6113 ; 0.885 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 494 ; 6.340 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;34.599 ;24.743 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 574 ;17.952 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.252 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4469 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 803 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 928 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2589 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2013 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2017 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 93 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.041 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3086 ; 0.277 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1025 ; 0.058 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3905 ; 0.378 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1807 ; 0.654 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1409 ; 0.995 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 112 A 295 2 REMARK 3 1 B 112 B 295 2 REMARK 3 2 A 304 A 356 2 REMARK 3 2 B 304 B 356 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1385 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1643 ; 0.30 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 1385 ; 0.05 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1643 ; 0.28 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 294 REMARK 3 RESIDUE RANGE : A 304 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 52.3586 89.7733 38.5684 REMARK 3 T TENSOR REMARK 3 T11: -0.1776 T22: 0.0154 REMARK 3 T33: -0.1488 T12: -0.2475 REMARK 3 T13: -0.0338 T23: 0.0994 REMARK 3 L TENSOR REMARK 3 L11: 3.7652 L22: 1.1702 REMARK 3 L33: 2.4072 L12: 1.2812 REMARK 3 L13: -1.3390 L23: -0.6525 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: -0.5051 S13: -0.3515 REMARK 3 S21: -0.1841 S22: -0.0401 S23: -0.1124 REMARK 3 S31: 0.1311 S32: 0.0121 S33: 0.0276 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 295 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3889 86.2429 22.5994 REMARK 3 T TENSOR REMARK 3 T11: 0.1766 T22: 0.1243 REMARK 3 T33: 0.0471 T12: -0.4431 REMARK 3 T13: -0.1053 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 17.0701 L22: 4.0981 REMARK 3 L33: 46.0286 L12: 0.8676 REMARK 3 L13: 4.8906 L23: -0.6010 REMARK 3 S TENSOR REMARK 3 S11: 0.4178 S12: 0.6747 S13: -0.6147 REMARK 3 S21: -1.1817 S22: 0.4531 S23: -0.1448 REMARK 3 S31: -1.8522 S32: 0.1862 S33: -0.8709 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 112 B 294 REMARK 3 RESIDUE RANGE : B 304 B 361 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2411 76.8492 50.5481 REMARK 3 T TENSOR REMARK 3 T11: -0.3646 T22: -0.2776 REMARK 3 T33: -0.2612 T12: -0.0927 REMARK 3 T13: 0.0659 T23: 0.1013 REMARK 3 L TENSOR REMARK 3 L11: 3.9154 L22: 3.0962 REMARK 3 L33: 3.8774 L12: -0.3009 REMARK 3 L13: 0.0927 L23: -1.8269 REMARK 3 S TENSOR REMARK 3 S11: -0.1889 S12: -0.4282 S13: -0.2661 REMARK 3 S21: 0.1133 S22: -0.1698 S23: -0.3401 REMARK 3 S31: -0.2577 S32: 0.3104 S33: 0.3587 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 295 B 303 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0331 89.8176 68.4017 REMARK 3 T TENSOR REMARK 3 T11: 0.7618 T22: 0.5132 REMARK 3 T33: 0.3413 T12: -0.7745 REMARK 3 T13: 0.0200 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 23.5051 L22: 24.0685 REMARK 3 L33: 130.1881 L12: -18.6893 REMARK 3 L13: 10.5913 L23: 25.5620 REMARK 3 S TENSOR REMARK 3 S11: 3.2547 S12: -1.9142 S13: 1.9312 REMARK 3 S21: -0.3370 S22: -3.2001 S23: -3.6536 REMARK 3 S31: -3.4354 S32: -4.7987 S33: -0.0546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BBA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9760 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13017 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.32900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.89700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3BB7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 4000, 0.2M MAGNESIUM CHLORIDE, REMARK 280 30% XYLITOL, 0.1M TRIS HCL, PH8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.98500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.62050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.62050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.49250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.62050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.62050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.47750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.62050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.62050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.49250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.62050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.62050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.47750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.98500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 358 REMARK 465 PRO A 359 REMARK 465 LEU A 360 REMARK 465 GLU A 361 REMARK 465 ASP A 362 REMARK 465 ASP B 362 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 126 121.77 -35.86 REMARK 500 GLN A 135 -151.28 -105.08 REMARK 500 LYS A 147 30.39 -97.27 REMARK 500 ALA A 182 -80.02 -38.39 REMARK 500 SER A 186 27.94 -151.36 REMARK 500 MET A 299 49.46 -145.06 REMARK 500 VAL A 328 22.11 47.25 REMARK 500 SER A 344 108.77 -161.64 REMARK 500 THR B 126 118.45 -29.75 REMARK 500 THR B 131 55.50 -147.21 REMARK 500 GLN B 135 -153.91 -105.67 REMARK 500 LYS B 147 31.40 -98.92 REMARK 500 ALA B 182 -77.76 -41.85 REMARK 500 PRO B 185 2.50 -68.12 REMARK 500 SER B 186 30.93 -151.90 REMARK 500 SER B 298 -168.05 -178.21 REMARK 500 ALA B 303 84.35 -64.44 REMARK 500 VAL B 328 17.85 50.51 REMARK 500 LEU B 337 70.49 51.71 REMARK 500 SER B 344 110.43 -163.76 REMARK 500 LYS B 358 162.22 -45.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BB7 RELATED DB: PDB REMARK 900 THE PRESENT ENTRY IS THE MATURE ENZYME AND THE RELATED ONE A MAJOR REMARK 900 FRAGMENT OF THE ZYMOGEN (C154A MUTANT) DBREF 3BBA A 112 359 UNP A9J7N5 A9J7N5_PREIN 156 403 DBREF 3BBA B 112 359 UNP A9J7N5 A9J7N5_PREIN 156 403 SEQADV 3BBA LYS A 144 UNP A9J7N5 ASN 188 CONFLICT SEQADV 3BBA VAL A 162 UNP A9J7N5 ALA 206 CONFLICT SEQADV 3BBA THR A 188 UNP A9J7N5 VAL 232 CONFLICT SEQADV 3BBA ASN A 207 UNP A9J7N5 ASP 251 CONFLICT SEQADV 3BBA ASN A 269 UNP A9J7N5 ASP 313 CONFLICT SEQADV 3BBA LEU A 360 UNP A9J7N5 EXPRESSION TAG SEQADV 3BBA GLU A 361 UNP A9J7N5 EXPRESSION TAG SEQADV 3BBA ASP A 362 UNP A9J7N5 EXPRESSION TAG SEQADV 3BBA LYS B 144 UNP A9J7N5 ASN 188 CONFLICT SEQADV 3BBA VAL B 162 UNP A9J7N5 ALA 206 CONFLICT SEQADV 3BBA THR B 188 UNP A9J7N5 VAL 232 CONFLICT SEQADV 3BBA ASN B 207 UNP A9J7N5 ASP 251 CONFLICT SEQADV 3BBA ASN B 269 UNP A9J7N5 ASP 313 CONFLICT SEQADV 3BBA LEU B 360 UNP A9J7N5 EXPRESSION TAG SEQADV 3BBA GLU B 361 UNP A9J7N5 EXPRESSION TAG SEQADV 3BBA ASP B 362 UNP A9J7N5 EXPRESSION TAG SEQRES 1 A 251 VAL ILE LYS PRO ASP PRO SER LYS TYR ALA ALA GLU VAL SEQRES 2 A 251 SER THR LEU LEU THR THR THR TRP GLY GLN GLN MET PRO SEQRES 3 A 251 TYR ASN LYS LEU LEU PRO LYS THR LYS LYS GLY ARG LEU SEQRES 4 A 251 ILE THR GLY CYS VAL ALA THR ALA THR ALA GLN VAL LEU SEQRES 5 A 251 ASN TYR PHE LYS TYR PRO VAL ARG GLY ILE GLY SER HIS SEQRES 6 A 251 THR VAL HIS TYR PRO ALA ASN ASP PRO SER GLY THR ALA SEQRES 7 A 251 ILE SER ALA ASP PHE GLY ASN THR THR TYR ASP TRP ALA SEQRES 8 A 251 ASN MET LYS ASP ASN TYR SER GLY ASN TYR THR GLU ALA SEQRES 9 A 251 GLU ALA ASN ALA VAL ALA THR LEU MET LEU HIS CYS GLY SEQRES 10 A 251 VAL ALA SER GLU MET GLN TYR GLY GLY PRO ASN GLU GLY SEQRES 11 A 251 SER GLY ALA TYR MET THR ASP CYS ALA ALA GLY LEU ARG SEQRES 12 A 251 THR TYR PHE GLY PHE THR ASP ALA GLU TYR ILE THR ARG SEQRES 13 A 251 ALA ASN TYR THR ASP GLU GLN TRP MET ASP ILE VAL PHE SEQRES 14 A 251 SER GLU LEU THR LYS GLY HIS PRO LEU ILE TYR GLY GLY SEQRES 15 A 251 VAL SER PRO GLY SER MET GLY GLN ASP ALA GLY HIS ALA SEQRES 16 A 251 PHE VAL ILE ASP GLY TYR ASN LYS ALA GLY LEU VAL SER SEQRES 17 A 251 VAL ASN TRP GLY TRP ASN GLY ASP VAL ASP GLY TYR TYR SEQRES 18 A 251 LYS ILE ASP LEU LEU ASN PRO GLY ASN MET TYR SER PHE SEQRES 19 A 251 THR ALA GLU GLN ASP MET VAL ARG GLY VAL TYR GLY LYS SEQRES 20 A 251 PRO LEU GLU ASP SEQRES 1 B 251 VAL ILE LYS PRO ASP PRO SER LYS TYR ALA ALA GLU VAL SEQRES 2 B 251 SER THR LEU LEU THR THR THR TRP GLY GLN GLN MET PRO SEQRES 3 B 251 TYR ASN LYS LEU LEU PRO LYS THR LYS LYS GLY ARG LEU SEQRES 4 B 251 ILE THR GLY CYS VAL ALA THR ALA THR ALA GLN VAL LEU SEQRES 5 B 251 ASN TYR PHE LYS TYR PRO VAL ARG GLY ILE GLY SER HIS SEQRES 6 B 251 THR VAL HIS TYR PRO ALA ASN ASP PRO SER GLY THR ALA SEQRES 7 B 251 ILE SER ALA ASP PHE GLY ASN THR THR TYR ASP TRP ALA SEQRES 8 B 251 ASN MET LYS ASP ASN TYR SER GLY ASN TYR THR GLU ALA SEQRES 9 B 251 GLU ALA ASN ALA VAL ALA THR LEU MET LEU HIS CYS GLY SEQRES 10 B 251 VAL ALA SER GLU MET GLN TYR GLY GLY PRO ASN GLU GLY SEQRES 11 B 251 SER GLY ALA TYR MET THR ASP CYS ALA ALA GLY LEU ARG SEQRES 12 B 251 THR TYR PHE GLY PHE THR ASP ALA GLU TYR ILE THR ARG SEQRES 13 B 251 ALA ASN TYR THR ASP GLU GLN TRP MET ASP ILE VAL PHE SEQRES 14 B 251 SER GLU LEU THR LYS GLY HIS PRO LEU ILE TYR GLY GLY SEQRES 15 B 251 VAL SER PRO GLY SER MET GLY GLN ASP ALA GLY HIS ALA SEQRES 16 B 251 PHE VAL ILE ASP GLY TYR ASN LYS ALA GLY LEU VAL SER SEQRES 17 B 251 VAL ASN TRP GLY TRP ASN GLY ASP VAL ASP GLY TYR TYR SEQRES 18 B 251 LYS ILE ASP LEU LEU ASN PRO GLY ASN MET TYR SER PHE SEQRES 19 B 251 THR ALA GLU GLN ASP MET VAL ARG GLY VAL TYR GLY LYS SEQRES 20 B 251 PRO LEU GLU ASP HELIX 1 1 GLY A 153 LYS A 167 1 15 HELIX 2 2 ASP A 200 MET A 204 5 5 HELIX 3 3 THR A 213 SER A 231 1 19 HELIX 4 4 TYR A 245 GLY A 258 1 14 HELIX 5 5 ALA A 268 TYR A 270 5 3 HELIX 6 6 THR A 271 LYS A 285 1 15 HELIX 7 7 ASN A 338 MET A 342 5 5 HELIX 8 8 GLY B 153 PHE B 166 1 14 HELIX 9 9 ASP B 193 THR B 197 5 5 HELIX 10 10 ASP B 200 MET B 204 5 5 HELIX 11 11 THR B 213 SER B 231 1 19 HELIX 12 12 TYR B 245 GLY B 258 1 14 HELIX 13 13 ALA B 268 TYR B 270 5 3 HELIX 14 14 THR B 271 LYS B 285 1 15 HELIX 15 15 ASN B 338 MET B 342 5 5 SHEET 1 A 2 HIS A 176 TYR A 180 0 SHEET 2 A 2 THR A 188 ALA A 192 -1 O THR A 188 N TYR A 180 SHEET 1 B 6 GLU A 263 THR A 266 0 SHEET 2 B 6 ALA A 347 ARG A 353 -1 O ARG A 353 N GLU A 263 SHEET 3 B 6 LEU A 289 SER A 295 -1 N GLY A 292 O ASP A 350 SHEET 4 B 6 ALA A 303 TYR A 312 -1 O ALA A 303 N SER A 295 SHEET 5 B 6 VAL A 318 ASN A 321 -1 O ASN A 321 N VAL A 308 SHEET 6 B 6 GLY A 330 TYR A 332 -1 O TYR A 332 N VAL A 318 SHEET 1 C 2 LYS B 144 THR B 145 0 SHEET 2 C 2 GLY B 148 ARG B 149 -1 O GLY B 148 N THR B 145 SHEET 1 D 2 HIS B 176 TYR B 180 0 SHEET 2 D 2 THR B 188 ALA B 192 -1 O THR B 188 N TYR B 180 SHEET 1 E 6 GLU B 263 THR B 266 0 SHEET 2 E 6 ALA B 347 ARG B 353 -1 O ARG B 353 N GLU B 263 SHEET 3 E 6 LEU B 289 SER B 295 -1 N GLY B 292 O ASP B 350 SHEET 4 E 6 ALA B 303 TYR B 312 -1 O ALA B 303 N SER B 295 SHEET 5 E 6 VAL B 318 ASN B 321 -1 O ASN B 321 N VAL B 308 SHEET 6 E 6 GLY B 330 TYR B 332 -1 O TYR B 332 N VAL B 318 CISPEP 1 MET A 136 PRO A 137 0 -7.27 CISPEP 2 TYR A 168 PRO A 169 0 1.67 CISPEP 3 TYR A 180 PRO A 181 0 -7.70 CISPEP 4 MET B 136 PRO B 137 0 2.97 CISPEP 5 TYR B 168 PRO B 169 0 3.79 CISPEP 6 TYR B 180 PRO B 181 0 -5.15 CRYST1 129.241 129.241 81.970 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007737 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012200 0.00000