HEADER HYDROLASE 12-NOV-07 3BCD TITLE ALPHA-AMYLASE B IN COMPLEX WITH MALTOTETRAOSE AND ALPHA-CYCLODEXTRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA AMYLASE, CATALYTIC REGION; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMYB; COMPND 5 EC: 3.2.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOTHERMOTHRIX ORENII; SOURCE 3 ORGANISM_TAXID: 373903; SOURCE 4 STRAIN: H 168; SOURCE 5 GENE: AMYB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS ALPHA-AMYLASE, MALTOTETRAOSE, ALPHA-CYCLODEXTRIN, THERMOSTABLE, KEYWDS 2 HALOPHILIC, N DOMAIN, RAW STARCH BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.-C.TAN,B.N.MIJTS,K.SWAMINATHAN,B.K.C.PATEL,C.DIVNE REVDAT 6 01-NOV-23 3BCD 1 HETSYN REVDAT 5 29-JUL-20 3BCD 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 25-OCT-17 3BCD 1 REMARK REVDAT 3 13-JUL-11 3BCD 1 VERSN REVDAT 2 24-FEB-09 3BCD 1 VERSN REVDAT 1 22-APR-08 3BCD 0 JRNL AUTH T.-C.TAN,B.N.MIJTS,K.SWAMINATHAN,B.K.C.PATEL,C.DIVNE JRNL TITL CRYSTAL STRUCTURE OF THE POLYEXTREMOPHILIC ALPHA-AMYLASE JRNL TITL 2 AMYB FROM HALOTHERMOTHRIX ORENII: DETAILS OF A PRODUCTIVE JRNL TITL 3 ENZYME-SUBSTRATE COMPLEX AND AN N DOMAIN WITH A ROLE IN JRNL TITL 4 BINDING RAW STARCH JRNL REF J.MOL.BIOL. V. 378 850 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18387632 JRNL DOI 10.1016/J.JMB.2008.02.041 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 43089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 898 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3106 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4747 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 164 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : -1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.833 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5089 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3271 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6903 ; 1.939 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7932 ; 1.597 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 585 ; 6.770 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 273 ;37.667 ;25.055 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 751 ;16.556 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.689 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 755 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5596 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1053 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 964 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3396 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2474 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2499 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 252 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.044 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.299 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.128 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 16 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2934 ; 1.013 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1199 ; 0.228 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4670 ; 1.493 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2278 ; 2.352 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2233 ; 3.526 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5494 5.4369 29.6919 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: 0.0464 REMARK 3 T33: -0.0928 T12: 0.0400 REMARK 3 T13: 0.0322 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 11.9639 L22: 12.0287 REMARK 3 L33: 2.8016 L12: -9.1864 REMARK 3 L13: -1.4447 L23: 1.0900 REMARK 3 S TENSOR REMARK 3 S11: 0.2751 S12: -0.0357 S13: 0.5943 REMARK 3 S21: -0.5385 S22: -0.1425 S23: -0.7649 REMARK 3 S31: -0.8960 S32: 0.2244 S33: -0.1327 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6197 -4.6895 36.3655 REMARK 3 T TENSOR REMARK 3 T11: -0.0252 T22: 0.0846 REMARK 3 T33: -0.0108 T12: -0.0417 REMARK 3 T13: 0.0182 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.1923 L22: 2.4588 REMARK 3 L33: 2.6285 L12: -1.4794 REMARK 3 L13: -0.1074 L23: 0.3338 REMARK 3 S TENSOR REMARK 3 S11: -0.1000 S12: -0.1167 S13: -0.0743 REMARK 3 S21: 0.2246 S22: -0.0210 S23: 0.1010 REMARK 3 S31: 0.0015 S32: -0.2692 S33: 0.1210 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7338 -1.1168 36.1630 REMARK 3 T TENSOR REMARK 3 T11: 0.0059 T22: 0.0909 REMARK 3 T33: -0.0384 T12: 0.0033 REMARK 3 T13: 0.0297 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.7096 L22: 5.8376 REMARK 3 L33: 1.9059 L12: -3.0528 REMARK 3 L13: -0.4303 L23: 0.5031 REMARK 3 S TENSOR REMARK 3 S11: 0.1513 S12: -0.1281 S13: -0.1136 REMARK 3 S21: -0.1353 S22: -0.0507 S23: 0.2105 REMARK 3 S31: -0.1622 S32: -0.2870 S33: -0.1007 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3520 -15.0482 29.5063 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.0575 REMARK 3 T33: 0.0842 T12: -0.0490 REMARK 3 T13: -0.0101 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 9.6746 L22: 3.7474 REMARK 3 L33: 3.0726 L12: -5.9290 REMARK 3 L13: -3.4153 L23: 1.6320 REMARK 3 S TENSOR REMARK 3 S11: -0.2747 S12: -0.5521 S13: 0.2005 REMARK 3 S21: 0.2823 S22: 0.2822 S23: -0.0552 REMARK 3 S31: 0.2603 S32: 0.4088 S33: -0.0075 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5995 9.0491 21.9412 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: 0.0099 REMARK 3 T33: 0.0713 T12: -0.1044 REMARK 3 T13: 0.0657 T23: -0.1819 REMARK 3 L TENSOR REMARK 3 L11: 1.8808 L22: 3.9523 REMARK 3 L33: 0.9740 L12: 0.0916 REMARK 3 L13: -0.6964 L23: -1.2165 REMARK 3 S TENSOR REMARK 3 S11: 0.4236 S12: -0.4171 S13: 0.3668 REMARK 3 S21: 0.1664 S22: -0.3884 S23: 0.5647 REMARK 3 S31: -0.2074 S32: 0.2263 S33: -0.0352 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 154 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1190 -1.0636 26.1735 REMARK 3 T TENSOR REMARK 3 T11: -0.0332 T22: 0.0396 REMARK 3 T33: -0.0224 T12: -0.1159 REMARK 3 T13: 0.0027 T23: -0.1247 REMARK 3 L TENSOR REMARK 3 L11: 4.4398 L22: 4.9065 REMARK 3 L33: 11.7085 L12: 2.1555 REMARK 3 L13: -1.4523 L23: -1.1219 REMARK 3 S TENSOR REMARK 3 S11: 0.4055 S12: -0.5710 S13: 0.0552 REMARK 3 S21: 0.5001 S22: -0.4127 S23: 0.0694 REMARK 3 S31: 0.0807 S32: 0.2640 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0510 10.8786 21.6818 REMARK 3 T TENSOR REMARK 3 T11: 0.0524 T22: 0.0457 REMARK 3 T33: 0.0429 T12: -0.1883 REMARK 3 T13: -0.0142 T23: -0.1336 REMARK 3 L TENSOR REMARK 3 L11: 1.1549 L22: 1.5479 REMARK 3 L33: 2.3224 L12: 0.9483 REMARK 3 L13: -1.1089 L23: -0.2145 REMARK 3 S TENSOR REMARK 3 S11: 0.3095 S12: -0.5342 S13: 0.3054 REMARK 3 S21: 0.2160 S22: -0.2883 S23: 0.1187 REMARK 3 S31: -0.2183 S32: 0.3561 S33: -0.0212 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 227 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 52.9731 18.1864 -2.1111 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: -0.0059 REMARK 3 T33: 0.1170 T12: -0.0899 REMARK 3 T13: -0.0432 T23: -0.0910 REMARK 3 L TENSOR REMARK 3 L11: 2.6787 L22: 2.2817 REMARK 3 L33: 1.3409 L12: 2.2977 REMARK 3 L13: -1.3094 L23: -1.1148 REMARK 3 S TENSOR REMARK 3 S11: -0.1088 S12: 0.1223 S13: -0.0178 REMARK 3 S21: -0.0103 S22: 0.0959 S23: 0.1031 REMARK 3 S31: -0.1002 S32: 0.3046 S33: 0.0129 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 54.7541 16.6909 1.8692 REMARK 3 T TENSOR REMARK 3 T11: -0.0363 T22: 0.0657 REMARK 3 T33: 0.0981 T12: -0.1157 REMARK 3 T13: -0.0176 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 0.4506 L22: 2.3521 REMARK 3 L33: 2.0386 L12: 0.7697 REMARK 3 L13: -0.8475 L23: -0.7690 REMARK 3 S TENSOR REMARK 3 S11: 0.1224 S12: -0.0261 S13: 0.0604 REMARK 3 S21: 0.0075 S22: -0.1039 S23: 0.1277 REMARK 3 S31: -0.2198 S32: 0.5417 S33: -0.0184 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): 52.1031 4.5671 8.1645 REMARK 3 T TENSOR REMARK 3 T11: -0.0236 T22: 0.0088 REMARK 3 T33: 0.0486 T12: -0.0406 REMARK 3 T13: -0.0236 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 3.0341 L22: 1.6246 REMARK 3 L33: 2.3172 L12: 1.2813 REMARK 3 L13: 0.6081 L23: -1.1342 REMARK 3 S TENSOR REMARK 3 S11: -0.0906 S12: -0.0898 S13: -0.0400 REMARK 3 S21: 0.0139 S22: -0.0164 S23: -0.0560 REMARK 3 S31: -0.0727 S32: 0.3913 S33: 0.1070 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 351 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): 52.1889 -2.9990 7.3967 REMARK 3 T TENSOR REMARK 3 T11: -0.0277 T22: 0.0180 REMARK 3 T33: 0.1023 T12: 0.0045 REMARK 3 T13: -0.0447 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.6977 L22: 2.5546 REMARK 3 L33: 7.6692 L12: -1.2270 REMARK 3 L13: 0.6515 L23: -2.7670 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: -0.1658 S13: 0.1251 REMARK 3 S21: -0.0223 S22: -0.1091 S23: -0.2270 REMARK 3 S31: 0.0570 S32: 0.3590 S33: 0.2324 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 374 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4929 -3.1392 8.5083 REMARK 3 T TENSOR REMARK 3 T11: 0.0340 T22: -0.0771 REMARK 3 T33: 0.0253 T12: -0.0159 REMARK 3 T13: -0.0206 T23: -0.0489 REMARK 3 L TENSOR REMARK 3 L11: 9.3770 L22: 2.4145 REMARK 3 L33: 9.8678 L12: -3.4828 REMARK 3 L13: 7.6556 L23: -4.8572 REMARK 3 S TENSOR REMARK 3 S11: -0.3127 S12: -0.3996 S13: 0.3005 REMARK 3 S21: -0.1877 S22: 0.0723 S23: -0.2620 REMARK 3 S31: 0.3716 S32: -0.2477 S33: 0.2404 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 384 A 405 REMARK 3 ORIGIN FOR THE GROUP (A): 40.7131 -7.6274 1.1138 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: -0.0227 REMARK 3 T33: 0.0727 T12: 0.0087 REMARK 3 T13: -0.0034 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 2.7991 L22: 1.2718 REMARK 3 L33: 3.4066 L12: 0.4778 REMARK 3 L13: 0.2390 L23: -1.8887 REMARK 3 S TENSOR REMARK 3 S11: 0.1003 S12: 0.2280 S13: 0.0419 REMARK 3 S21: -0.0180 S22: -0.0634 S23: -0.1438 REMARK 3 S31: 0.3666 S32: -0.1843 S33: -0.0369 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 406 A 437 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5325 -9.3708 1.7754 REMARK 3 T TENSOR REMARK 3 T11: 0.0290 T22: 0.0139 REMARK 3 T33: 0.0437 T12: -0.0455 REMARK 3 T13: -0.0019 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.3435 L22: 0.4994 REMARK 3 L33: 0.4767 L12: 0.7330 REMARK 3 L13: 0.0571 L23: 0.2484 REMARK 3 S TENSOR REMARK 3 S11: -0.1140 S12: -0.0368 S13: 0.0417 REMARK 3 S21: 0.0094 S22: 0.0882 S23: -0.1576 REMARK 3 S31: 0.2158 S32: -0.2790 S33: 0.0257 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 438 A 459 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2691 4.7763 7.2575 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: -0.0469 REMARK 3 T33: 0.1150 T12: -0.0773 REMARK 3 T13: 0.0002 T23: -0.0895 REMARK 3 L TENSOR REMARK 3 L11: 1.0211 L22: 2.8445 REMARK 3 L33: 2.1318 L12: -0.3832 REMARK 3 L13: 0.6955 L23: -2.3771 REMARK 3 S TENSOR REMARK 3 S11: 0.1322 S12: -0.1597 S13: 0.1676 REMARK 3 S21: -0.1423 S22: -0.1387 S23: 0.0063 REMARK 3 S31: -0.1872 S32: 0.1042 S33: 0.0065 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 460 A 496 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3553 -2.2538 15.9529 REMARK 3 T TENSOR REMARK 3 T11: -0.0031 T22: -0.0155 REMARK 3 T33: 0.0613 T12: -0.0508 REMARK 3 T13: -0.0051 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 1.1349 L22: 2.1895 REMARK 3 L33: 1.7180 L12: 0.5660 REMARK 3 L13: -0.3418 L23: -0.8045 REMARK 3 S TENSOR REMARK 3 S11: 0.1609 S12: -0.2759 S13: 0.0393 REMARK 3 S21: 0.0337 S22: -0.0346 S23: -0.0398 REMARK 3 S31: -0.0959 S32: -0.2474 S33: -0.1263 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 497 A 506 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5393 -14.0355 22.8601 REMARK 3 T TENSOR REMARK 3 T11: -0.0134 T22: 0.0772 REMARK 3 T33: 0.0640 T12: -0.0181 REMARK 3 T13: -0.0377 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.9367 L22: 0.7895 REMARK 3 L33: 8.8459 L12: 0.8600 REMARK 3 L13: -2.8785 L23: -2.6427 REMARK 3 S TENSOR REMARK 3 S11: -0.2523 S12: -0.5891 S13: 0.0088 REMARK 3 S21: 0.0709 S22: 0.1914 S23: -0.2548 REMARK 3 S31: 0.2645 S32: -0.1397 S33: 0.0609 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 507 A 537 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0425 -21.1277 12.5064 REMARK 3 T TENSOR REMARK 3 T11: 0.0441 T22: -0.0356 REMARK 3 T33: 0.0640 T12: -0.0559 REMARK 3 T13: 0.0264 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 0.8262 L22: 2.2923 REMARK 3 L33: 9.3186 L12: -0.8463 REMARK 3 L13: 2.1153 L23: -3.4413 REMARK 3 S TENSOR REMARK 3 S11: -0.1606 S12: 0.0703 S13: -0.3229 REMARK 3 S21: -0.0038 S22: 0.1908 S23: 0.1293 REMARK 3 S31: 0.3659 S32: 0.0794 S33: -0.0303 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 538 A 576 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9667 -19.4506 16.2208 REMARK 3 T TENSOR REMARK 3 T11: 0.0115 T22: 0.0570 REMARK 3 T33: 0.0262 T12: -0.1072 REMARK 3 T13: 0.0171 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.6617 L22: 1.6543 REMARK 3 L33: 2.3989 L12: -0.2922 REMARK 3 L13: 0.5008 L23: -0.8827 REMARK 3 S TENSOR REMARK 3 S11: -0.1753 S12: -0.0790 S13: -0.0958 REMARK 3 S21: -0.0355 S22: 0.1547 S23: 0.0756 REMARK 3 S31: 0.3904 S32: -0.5317 S33: 0.0207 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 577 A 599 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7414 -16.2049 15.8966 REMARK 3 T TENSOR REMARK 3 T11: 0.0356 T22: 0.1624 REMARK 3 T33: -0.0350 T12: -0.1004 REMARK 3 T13: 0.0248 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 3.4474 L22: 3.0606 REMARK 3 L33: 1.6873 L12: -1.7445 REMARK 3 L13: 1.2328 L23: -1.8809 REMARK 3 S TENSOR REMARK 3 S11: -0.1306 S12: -0.0409 S13: -0.1669 REMARK 3 S21: 0.2359 S22: 0.1230 S23: -0.0189 REMARK 3 S31: 0.0480 S32: -0.5681 S33: 0.0076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0412 REMARK 200 MONOCHROMATOR : BENT GERMANIUM CRYSTAL, REMARK 200 HORIZONTALLY FOCUSING REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47080 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46300 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 3BC9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 0.1M MES-OH, 20% REMARK 280 (W/V) PEG 8000, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 114.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 114.35000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 CYS A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 ASP A 8 REMARK 465 VAL A 9 REMARK 465 ASN A 10 REMARK 465 ASN A 11 REMARK 465 PRO A 12 REMARK 465 ASN A 13 REMARK 465 ARG A 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 492 CG GLU A 492 CD 0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 288 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 313 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 373 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 502 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 77 41.14 77.05 REMARK 500 THR A 83 -8.61 65.01 REMARK 500 ALA A 128 35.59 -83.78 REMARK 500 LEU A 192 32.65 -90.84 REMARK 500 ALA A 237 143.14 -37.37 REMARK 500 TYR A 272 -43.76 70.25 REMARK 500 LEU A 315 -61.26 -120.93 REMARK 500 ASP A 356 110.99 -31.73 REMARK 500 GLU A 489 36.43 74.21 REMARK 500 ASP A 516 -158.92 -152.91 REMARK 500 LYS A 569 52.27 -106.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 706 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 31 O REMARK 620 2 HOH A1065 O 90.5 REMARK 620 3 HOH A1125 O 174.0 83.8 REMARK 620 4 HOH A1135 O 87.3 102.1 92.1 REMARK 620 5 HOH A1168 O 101.1 93.6 81.2 162.2 REMARK 620 6 HOH A1252 O 90.8 178.6 94.9 78.4 85.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 232 OD1 REMARK 620 2 ASP A 313 O 106.1 REMARK 620 3 ASP A 313 OD1 163.0 87.6 REMARK 620 4 ASP A 319 OD1 92.0 78.9 100.6 REMARK 620 5 HIS A 354 O 87.7 93.6 81.4 172.1 REMARK 620 6 HOH A1016 O 83.6 168.7 84.0 95.1 92.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 283 OD1 REMARK 620 2 ASP A 283 OD2 51.0 REMARK 620 3 SER A 303 O 77.9 76.4 REMARK 620 4 ASP A 305 OD1 129.3 78.6 97.7 REMARK 620 5 ASP A 321 OD1 84.6 95.3 162.2 96.0 REMARK 620 6 GLU A 323 OE1 148.1 153.7 89.9 81.2 103.4 REMARK 620 7 HOH A1240 O 66.0 116.5 84.3 164.7 85.4 83.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 704 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 283 OD2 REMARK 620 2 ASP A 305 OD2 86.2 REMARK 620 3 ASP A 313 OD2 99.5 96.8 REMARK 620 4 ASP A 319 OD2 115.6 157.6 84.9 REMARK 620 5 VAL A 320 O 105.8 88.2 154.6 81.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 708 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 368 O REMARK 620 2 GLN A 368 OE1 99.1 REMARK 620 3 SER A 371 O 78.5 176.0 REMARK 620 4 ARG A 373 O 157.8 82.3 101.2 REMARK 620 5 HOH A1181 O 69.9 108.2 74.0 88.5 REMARK 620 6 HOH A1183 O 76.8 107.0 69.5 124.2 134.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 707 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 414 O REMARK 620 2 ASP A 414 OD1 86.8 REMARK 620 3 ASN A 417 OD1 84.9 171.3 REMARK 620 4 GLY A 418 O 93.5 94.1 89.2 REMARK 620 5 HOH A1076 O 175.3 96.0 92.4 82.6 REMARK 620 6 HOH A1166 O 96.9 96.2 82.1 165.8 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 419 O REMARK 620 2 ALA A 517 O 75.3 REMARK 620 3 ASP A 518 OD1 152.0 82.7 REMARK 620 4 ASP A 541 OD1 75.5 117.9 131.1 REMARK 620 5 ASP A 541 OD2 118.7 97.3 80.7 54.4 REMARK 620 6 HOH A1050 O 113.2 169.3 87.1 71.7 84.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 705 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 527 O REMARK 620 2 VAL A 530 O 86.3 REMARK 620 3 ASP A 533 OD1 104.3 85.2 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BC9 RELATED DB: PDB REMARK 900 ALPHA-AMYLASE B IN COMPLEX WITH ACARBOSE REMARK 900 RELATED ID: 3BCF RELATED DB: PDB REMARK 900 ALPHA-AMYLASE B WITHOUT SUGAR DBREF 3BCD A 1 599 UNP Q2ADF2 Q2ADF2_9FIRM 25 623 SEQRES 1 A 599 GLY CYS SER ASN ILE SER GLU ASP VAL ASN ASN PRO ASN SEQRES 2 A 599 ARG SER LEU PHE LEU ILE GLU SER GLU PRO SER THR GLY SEQRES 3 A 599 ALA SER VAL SER LYS ASN LEU THR GLU ILE ILE LEU ILE SEQRES 4 A 599 PHE SER ASN ASP ILE ASN LYS VAL SER GLN LEU ALA LEU SEQRES 5 A 599 THR ASP LEU ILE THR ASP SER ASP ILE GLN GLY ILE ASP SEQRES 6 A 599 TYR ASN ILE GLU GLY ASN LYS VAL ILE ILE ASN ASN PHE SEQRES 7 A 599 SER LEU GLU PRO THR CYS ASN TYR ARG LEU SER TYR GLU SEQRES 8 A 599 VAL ILE ASP ILE TYR ASP ASN HIS LEU GLN GLY TYR ILE SEQRES 9 A 599 GLU PHE LEU VAL ASN GLN SER ASN TYR PRO GLN ILE PRO SEQRES 10 A 599 ASP GLN GLU VAL ASN HIS THR ILE LEU GLN ALA PHE TYR SEQRES 11 A 599 TRP GLU MET ASN THR GLY GLU TYR ALA THR GLU HIS PRO SEQRES 12 A 599 GLU GLU ALA ASN LEU TRP ASN LEU LEU ALA GLU ARG ALA SEQRES 13 A 599 PRO GLU LEU ALA GLU ALA GLY PHE THR ALA VAL TRP LEU SEQRES 14 A 599 PRO PRO ALA ASN LYS GLY MET ALA GLY ILE HIS ASP VAL SEQRES 15 A 599 GLY TYR GLY THR TYR ASP LEU TRP ASP LEU GLY GLU PHE SEQRES 16 A 599 ASP GLN LYS GLY THR VAL ARG THR LYS TYR GLY THR LYS SEQRES 17 A 599 GLY GLU LEU GLU ASN ALA ILE ASP ALA LEU HIS ASN ASN SEQRES 18 A 599 ASP ILE LYS VAL TYR PHE ASP ALA VAL LEU ASN HIS ARG SEQRES 19 A 599 MET GLY ALA ASP TYR ALA GLU THR VAL LEU LEU ASP GLU SEQRES 20 A 599 ASN SER ARG ASP LYS PRO GLY GLN TYR ILE LYS ALA TRP SEQRES 21 A 599 THR GLY PHE ASN PHE PRO GLY ARG ASN GLY GLU TYR SER SEQRES 22 A 599 ASN PHE THR TRP ASN GLY GLN CYS PHE ASP GLY THR ASP SEQRES 23 A 599 TRP ASP ASP TYR SER LYS GLU SER GLY LYS TYR LEU PHE SEQRES 24 A 599 ASP GLU LYS SER TRP ASP TRP THR TYR ASN TRP ASP GLU SEQRES 25 A 599 ASP TYR LEU MET GLY ALA ASP VAL ASP TYR GLU ASN GLU SEQRES 26 A 599 ALA VAL GLN ASN ASP VAL ILE ASP TRP GLY GLN TRP ILE SEQRES 27 A 599 ILE ASN ASN ILE ASP PHE ASP GLY PHE ARG LEU ASP ALA SEQRES 28 A 599 VAL LYS HIS ILE ASP TYR ARG PHE ILE ASP LYS TRP MET SEQRES 29 A 599 SER ALA VAL GLN ASN SER SER ASN ARG ASP VAL PHE PHE SEQRES 30 A 599 VAL GLY GLU ALA TRP VAL GLU ASP VAL ASP ASP LEU LYS SEQRES 31 A 599 GLY PHE LEU ASP THR VAL GLY ASN PRO ASP LEU ARG VAL SEQRES 32 A 599 PHE ASP PHE PRO LEU ARG SER PHE PHE VAL ASP MET LEU SEQRES 33 A 599 ASN GLY ALA TYR MET ALA ASP LEU ARG ASN ALA GLY LEU SEQRES 34 A 599 VAL ASN SER PRO GLY TYR GLU ASN ARG ALA VAL THR PHE SEQRES 35 A 599 VAL ASP ASN HIS ASP THR ASP ARG ASP GLU GLY SER TYR SEQRES 36 A 599 THR VAL SER ILE TYR SER ARG LYS TYR GLN ALA TYR ALA SEQRES 37 A 599 TYR ILE LEU THR ARG ALA GLU GLY VAL PRO THR VAL TYR SEQRES 38 A 599 TRP LYS ASP TYR TYR ILE TRP GLU MET LYS GLU GLY LEU SEQRES 39 A 599 ASP LYS LEU LEU THR ALA ARG ARG TYR TYR ALA TYR GLY SEQRES 40 A 599 PRO GLY TYR GLU VAL ASP ASN ASN ASP ALA ASP ILE TYR SEQRES 41 A 599 SER TYR VAL ARG SER GLY PHE PRO ASP VAL ALA GLY ASP SEQRES 42 A 599 GLY LEU VAL LEU MET ILE SER ASP GLY THR SER GLY ASN SEQRES 43 A 599 VAL ALA GLY LYS TRP ILE ASN SER ARG GLN PRO ASP THR SEQRES 44 A 599 GLU PHE TYR ASP LEU THR GLY HIS ILE LYS GLU HIS VAL SEQRES 45 A 599 THR THR ASP SER GLU GLY TYR GLY ASN PHE LYS VAL ILE SEQRES 46 A 599 LYS SER GLU ASP LYS GLY TRP SER ILE TRP VAL PRO VAL SEQRES 47 A 599 GLU HET BGC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HET GLC B 4 11 HET GLC C 1 12 HET GLC C 2 11 HET GLC C 3 11 HET GLC C 4 11 HET GLC D 1 11 HET GLC D 2 11 HET GLC D 3 11 HET GLC D 4 11 HET GLC D 5 11 HET GLC D 6 11 HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HET NA A 704 1 HET CA A 705 1 HET CA A 706 1 HET CA A 707 1 HET CA A 708 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 BGC C6 H12 O6 FORMUL 2 GLC 13(C6 H12 O6) FORMUL 5 CA 7(CA 2+) FORMUL 8 NA NA 1+ FORMUL 13 HOH *259(H2 O) HELIX 1 1 PRO A 117 VAL A 121 5 5 HELIX 2 2 THR A 135 HIS A 142 1 8 HELIX 3 3 PRO A 143 ALA A 146 5 4 HELIX 4 4 ASN A 147 GLY A 163 1 17 HELIX 5 5 ALA A 177 ASP A 181 5 5 HELIX 6 6 THR A 207 ASN A 221 1 15 HELIX 7 7 ASN A 278 GLN A 280 5 3 HELIX 8 8 ASN A 324 ASN A 341 1 18 HELIX 9 9 ALA A 351 ILE A 355 5 5 HELIX 10 10 ASP A 356 SER A 371 1 16 HELIX 11 11 ASP A 385 GLY A 397 1 13 HELIX 12 12 ASP A 405 MET A 415 1 11 HELIX 13 13 LEU A 416 GLY A 418 5 3 HELIX 14 14 TYR A 420 ALA A 427 5 8 HELIX 15 15 GLY A 428 SER A 432 5 5 HELIX 16 16 TYR A 435 ASN A 437 5 3 HELIX 17 17 ARG A 462 ARG A 473 1 12 HELIX 18 18 TRP A 482 ILE A 487 1 6 HELIX 19 19 MET A 490 TYR A 504 1 15 SHEET 1 A 4 LEU A 18 GLU A 22 0 SHEET 2 A 4 ILE A 36 PHE A 40 -1 O ILE A 39 N ILE A 19 SHEET 3 A 4 LYS A 72 ASN A 76 -1 O VAL A 73 N LEU A 38 SHEET 4 A 4 ASP A 65 GLU A 69 -1 N GLU A 69 O LYS A 72 SHEET 1 B 5 ALA A 27 VAL A 29 0 SHEET 2 B 5 HIS A 99 VAL A 108 1 O LEU A 107 N VAL A 29 SHEET 3 B 5 ASN A 85 ASP A 94 -1 N TYR A 86 O PHE A 106 SHEET 4 B 5 ILE A 44 ASP A 54 -1 N THR A 53 O ARG A 87 SHEET 5 B 5 SER A 59 ASP A 60 -1 O SER A 59 N ASP A 54 SHEET 1 C 9 ILE A 125 GLN A 127 0 SHEET 2 C 9 ALA A 166 TRP A 168 1 O TRP A 168 N LEU A 126 SHEET 3 C 9 LYS A 224 ALA A 229 1 O LYS A 224 N VAL A 167 SHEET 4 C 9 GLY A 346 LEU A 349 1 O GLY A 346 N PHE A 227 SHEET 5 C 9 PHE A 376 GLY A 379 1 O VAL A 378 N LEU A 349 SHEET 6 C 9 LEU A 401 PHE A 404 1 O ARG A 402 N GLY A 379 SHEET 7 C 9 ALA A 439 PHE A 442 1 O VAL A 440 N VAL A 403 SHEET 8 C 9 VAL A 477 TYR A 481 1 O THR A 479 N THR A 441 SHEET 9 C 9 ILE A 125 GLN A 127 1 N ILE A 125 O VAL A 480 SHEET 1 D 2 LYS A 174 GLY A 175 0 SHEET 2 D 2 THR A 186 ASP A 188 -1 O TYR A 187 N LYS A 174 SHEET 1 E 4 HIS A 233 ARG A 234 0 SHEET 2 E 4 ALA A 318 VAL A 320 -1 O ALA A 318 N ARG A 234 SHEET 3 E 4 PHE A 282 ASP A 288 -1 N GLY A 284 O ASP A 319 SHEET 4 E 4 GLU A 293 LEU A 298 -1 O TYR A 297 N THR A 285 SHEET 1 F 2 TYR A 239 LEU A 244 0 SHEET 2 F 2 TYR A 256 GLY A 262 -1 O ILE A 257 N VAL A 243 SHEET 1 G 6 GLY A 509 TYR A 510 0 SHEET 2 G 6 ILE A 519 ARG A 524 -1 O VAL A 523 N TYR A 510 SHEET 3 G 6 LEU A 535 SER A 540 -1 O LEU A 535 N ARG A 524 SHEET 4 G 6 TRP A 592 PRO A 597 -1 O TRP A 595 N VAL A 536 SHEET 5 G 6 GLU A 560 ASP A 563 -1 N TYR A 562 O VAL A 596 SHEET 6 G 6 HIS A 571 THR A 573 -1 O VAL A 572 N PHE A 561 SHEET 1 H 2 VAL A 547 ASN A 553 0 SHEET 2 H 2 TYR A 579 ILE A 585 -1 O VAL A 584 N ALA A 548 LINK O4 BGC B 1 C1 GLC B 2 1555 1555 1.44 LINK O4 GLC B 2 C1 GLC B 3 1555 1555 1.46 LINK O4 GLC B 3 C1 GLC B 4 1555 1555 1.50 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.44 LINK O4 GLC C 2 C1 GLC C 3 1555 1555 1.42 LINK O4 GLC C 3 C1 GLC C 4 1555 1555 1.44 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.43 LINK C1 GLC D 1 O4 GLC D 6 1555 1555 1.44 LINK O4 GLC D 2 C1 GLC D 3 1555 1555 1.45 LINK O4 GLC D 3 C1 GLC D 4 1555 1555 1.44 LINK O4 GLC D 4 C1 GLC D 5 1555 1555 1.47 LINK O4 GLC D 5 C1 GLC D 6 1555 1555 1.43 LINK O LYS A 31 CA CA A 706 1555 1555 2.36 LINK OD1 ASN A 232 CA CA A 702 1555 1555 2.31 LINK OD1 ASP A 283 CA CA A 701 1555 1555 2.38 LINK OD2 ASP A 283 CA CA A 701 1555 1555 2.60 LINK OD2 ASP A 283 NA NA A 704 1555 1555 2.25 LINK O SER A 303 CA CA A 701 1555 1555 2.29 LINK OD1 ASP A 305 CA CA A 701 1555 1555 2.28 LINK OD2 ASP A 305 NA NA A 704 1555 1555 2.28 LINK O ASP A 313 CA CA A 702 1555 1555 2.31 LINK OD1 ASP A 313 CA CA A 702 1555 1555 2.31 LINK OD2 ASP A 313 NA NA A 704 1555 1555 2.26 LINK OD1 ASP A 319 CA CA A 702 1555 1555 2.31 LINK OD2 ASP A 319 NA NA A 704 1555 1555 2.29 LINK O VAL A 320 NA NA A 704 1555 1555 2.51 LINK OD1 ASP A 321 CA CA A 701 1555 1555 2.30 LINK OE1 GLU A 323 CA CA A 701 1555 1555 2.34 LINK O HIS A 354 CA CA A 702 1555 1555 2.34 LINK O GLN A 368 CA CA A 708 1555 1555 2.34 LINK OE1 GLN A 368 CA CA A 708 1555 1555 2.38 LINK O SER A 371 CA CA A 708 1555 1555 2.33 LINK O ARG A 373 CA CA A 708 1555 1555 2.34 LINK O ASP A 414 CA CA A 707 1555 1555 2.33 LINK OD1 ASP A 414 CA CA A 707 1555 1555 2.30 LINK OD1 ASN A 417 CA CA A 707 1555 1555 2.30 LINK O GLY A 418 CA CA A 707 1555 1555 2.36 LINK O ALA A 419 CA CA A 703 1555 1555 2.33 LINK O ALA A 517 CA CA A 703 1555 1555 2.31 LINK OD1 ASP A 518 CA CA A 703 1555 1555 2.34 LINK O PHE A 527 CA CA A 705 1555 1555 2.33 LINK O VAL A 530 CA CA A 705 1555 1555 2.47 LINK OD1 ASP A 533 CA CA A 705 1555 1555 2.32 LINK OD1 ASP A 541 CA CA A 703 1555 1555 2.34 LINK OD2 ASP A 541 CA CA A 703 1555 1555 2.36 LINK CA CA A 701 O HOH A1240 1555 1555 2.52 LINK CA CA A 702 O HOH A1016 1555 1555 2.42 LINK CA CA A 703 O HOH A1050 1555 1555 2.12 LINK CA CA A 706 O HOH A1065 1555 1555 2.36 LINK CA CA A 706 O HOH A1125 1555 1555 2.36 LINK CA CA A 706 O HOH A1135 1555 1555 2.34 LINK CA CA A 706 O HOH A1168 1555 1555 2.35 LINK CA CA A 706 O HOH A1252 1555 1555 2.61 LINK CA CA A 707 O HOH A1076 1555 1555 2.36 LINK CA CA A 707 O HOH A1166 1555 1555 2.73 LINK CA CA A 708 O HOH A1181 1555 1555 2.36 LINK CA CA A 708 O HOH A1183 1555 1555 2.35 CISPEP 1 GLU A 22 PRO A 23 0 -2.76 CRYST1 228.700 78.050 50.640 90.00 98.90 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004373 0.000000 0.000685 0.00000 SCALE2 0.000000 0.012812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019988 0.00000