data_3BD4 # _entry.id 3BD4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BD4 pdb_00003bd4 10.2210/pdb3bd4/pdb RCSB RCSB045371 ? ? WWPDB D_1000045371 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 4 'Structure model' 1 3 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site 6 4 'Structure model' pdbx_entry_details 7 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BD4 _pdbx_database_status.recvd_initial_deposition_date 2007-11-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BD3 . unspecified PDB 3BD5 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Park, S.K.' 1 'Kim, J.S.' 2 # _citation.id primary _citation.title ;Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals ; _citation.journal_abbrev Proteins _citation.journal_volume 71 _citation.page_first 2091 _citation.page_last 2096 _citation.year 2008 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18338383 _citation.pdbx_database_id_DOI 10.1002/prot.22011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Park, S.Y.' 1 ? primary 'Lee, W.R.' 2 ? primary 'Lee, S.C.' 3 ? primary 'Kwon, M.H.' 4 ? primary 'Kim, Y.S.' 5 ? primary 'Kim, J.S.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'catalytic antibody' 12460.012 2 ? ? ? ? 2 non-polymer syn 'CADMIUM ION' 112.411 2 ? ? ? ? 3 non-polymer syn '2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL' 209.240 1 ? ? ? ? 4 water nat water 18.015 101 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DNA degrading antibody' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTI SSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIK ; _entity_poly.pdbx_seq_one_letter_code_can ;LVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTI SSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 '2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL' BTB 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 VAL n 1 3 MET n 1 4 SER n 1 5 GLN n 1 6 SER n 1 7 PRO n 1 8 SER n 1 9 SER n 1 10 LEU n 1 11 ALA n 1 12 VAL n 1 13 SER n 1 14 ALA n 1 15 GLY n 1 16 GLU n 1 17 LYS n 1 18 VAL n 1 19 THR n 1 20 MET n 1 21 SER n 1 22 CYS n 1 23 LYS n 1 24 SER n 1 25 SER n 1 26 GLN n 1 27 SER n 1 28 LEU n 1 29 PHE n 1 30 ASN n 1 31 SER n 1 32 ARG n 1 33 THR n 1 34 ARG n 1 35 LYS n 1 36 ASN n 1 37 TYR n 1 38 LEU n 1 39 ALA n 1 40 TRP n 1 41 TYR n 1 42 GLN n 1 43 GLN n 1 44 LYS n 1 45 PRO n 1 46 GLY n 1 47 GLN n 1 48 SER n 1 49 PRO n 1 50 LYS n 1 51 LEU n 1 52 LEU n 1 53 ILE n 1 54 TYR n 1 55 TRP n 1 56 ALA n 1 57 SER n 1 58 THR n 1 59 ARG n 1 60 GLU n 1 61 SER n 1 62 GLY n 1 63 VAL n 1 64 PRO n 1 65 ASP n 1 66 ARG n 1 67 PHE n 1 68 THR n 1 69 GLY n 1 70 SER n 1 71 GLY n 1 72 SER n 1 73 GLY n 1 74 THR n 1 75 ASP n 1 76 PHE n 1 77 THR n 1 78 LEU n 1 79 THR n 1 80 ILE n 1 81 SER n 1 82 SER n 1 83 VAL n 1 84 GLN n 1 85 ALA n 1 86 GLU n 1 87 ASP n 1 88 LEU n 1 89 ALA n 1 90 VAL n 1 91 TYR n 1 92 TYR n 1 93 CYS n 1 94 LYS n 1 95 GLN n 1 96 SER n 1 97 TYR n 1 98 TYR n 1 99 HIS n 1 100 MET n 1 101 TYR n 1 102 THR n 1 103 PHE n 1 104 GLY n 1 105 SER n 1 106 GLY n 1 107 THR n 1 108 LYS n 1 109 LEU n 1 110 GLU n 1 111 ILE n 1 112 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene '3d8 vl' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pIg20 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BTB non-polymer . '2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL' 'BIS-TRIS BUFFER' 'C8 H19 N O5' 209.240 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 160 160 LEU LEU A . n A 1 2 VAL 2 161 161 VAL VAL A . n A 1 3 MET 3 162 162 MET MET A . n A 1 4 SER 4 163 163 SER SER A . n A 1 5 GLN 5 164 164 GLN GLN A . n A 1 6 SER 6 165 165 SER SER A . n A 1 7 PRO 7 166 166 PRO PRO A . n A 1 8 SER 8 167 167 SER SER A . n A 1 9 SER 9 168 168 SER SER A . n A 1 10 LEU 10 169 169 LEU LEU A . n A 1 11 ALA 11 170 170 ALA ALA A . n A 1 12 VAL 12 171 171 VAL VAL A . n A 1 13 SER 13 172 172 SER SER A . n A 1 14 ALA 14 173 173 ALA ALA A . n A 1 15 GLY 15 174 174 GLY GLY A . n A 1 16 GLU 16 175 175 GLU GLU A . n A 1 17 LYS 17 176 176 LYS LYS A . n A 1 18 VAL 18 177 177 VAL VAL A . n A 1 19 THR 19 178 178 THR THR A . n A 1 20 MET 20 179 179 MET MET A . n A 1 21 SER 21 180 180 SER SER A . n A 1 22 CYS 22 181 181 CYS CYS A . n A 1 23 LYS 23 182 182 LYS LYS A . n A 1 24 SER 24 183 183 SER SER A . n A 1 25 SER 25 184 184 SER SER A . n A 1 26 GLN 26 185 185 GLN GLN A . n A 1 27 SER 27 186 186 SER SER A . n A 1 28 LEU 28 187 187 LEU LEU A . n A 1 29 PHE 29 188 188 PHE PHE A . n A 1 30 ASN 30 189 189 ASN ASN A . n A 1 31 SER 31 190 190 SER SER A . n A 1 32 ARG 32 191 191 ARG ARG A . n A 1 33 THR 33 192 192 THR THR A . n A 1 34 ARG 34 193 193 ARG ARG A . n A 1 35 LYS 35 194 194 LYS LYS A . n A 1 36 ASN 36 195 195 ASN ASN A . n A 1 37 TYR 37 196 196 TYR TYR A . n A 1 38 LEU 38 197 197 LEU LEU A . n A 1 39 ALA 39 198 198 ALA ALA A . n A 1 40 TRP 40 199 199 TRP TRP A . n A 1 41 TYR 41 200 200 TYR TYR A . n A 1 42 GLN 42 201 201 GLN GLN A . n A 1 43 GLN 43 202 202 GLN GLN A . n A 1 44 LYS 44 203 203 LYS LYS A . n A 1 45 PRO 45 204 204 PRO PRO A . n A 1 46 GLY 46 205 205 GLY GLY A . n A 1 47 GLN 47 206 206 GLN GLN A . n A 1 48 SER 48 207 207 SER SER A . n A 1 49 PRO 49 208 208 PRO PRO A . n A 1 50 LYS 50 209 209 LYS LYS A . n A 1 51 LEU 51 210 210 LEU LEU A . n A 1 52 LEU 52 211 211 LEU LEU A . n A 1 53 ILE 53 212 212 ILE ILE A . n A 1 54 TYR 54 213 213 TYR TYR A . n A 1 55 TRP 55 214 214 TRP TRP A . n A 1 56 ALA 56 215 215 ALA ALA A . n A 1 57 SER 57 216 216 SER SER A . n A 1 58 THR 58 217 217 THR THR A . n A 1 59 ARG 59 218 218 ARG ARG A . n A 1 60 GLU 60 219 219 GLU GLU A . n A 1 61 SER 61 220 220 SER SER A . n A 1 62 GLY 62 221 221 GLY GLY A . n A 1 63 VAL 63 222 222 VAL VAL A . n A 1 64 PRO 64 223 223 PRO PRO A . n A 1 65 ASP 65 224 224 ASP ASP A . n A 1 66 ARG 66 225 225 ARG ARG A . n A 1 67 PHE 67 226 226 PHE PHE A . n A 1 68 THR 68 227 227 THR THR A . n A 1 69 GLY 69 228 228 GLY GLY A . n A 1 70 SER 70 229 229 SER SER A . n A 1 71 GLY 71 230 230 GLY GLY A . n A 1 72 SER 72 231 231 SER SER A . n A 1 73 GLY 73 232 232 GLY GLY A . n A 1 74 THR 74 233 233 THR THR A . n A 1 75 ASP 75 234 234 ASP ASP A . n A 1 76 PHE 76 235 235 PHE PHE A . n A 1 77 THR 77 236 236 THR THR A . n A 1 78 LEU 78 237 237 LEU LEU A . n A 1 79 THR 79 238 238 THR THR A . n A 1 80 ILE 80 239 239 ILE ILE A . n A 1 81 SER 81 240 240 SER SER A . n A 1 82 SER 82 241 241 SER SER A . n A 1 83 VAL 83 242 242 VAL VAL A . n A 1 84 GLN 84 243 243 GLN GLN A . n A 1 85 ALA 85 244 244 ALA ALA A . n A 1 86 GLU 86 245 245 GLU GLU A . n A 1 87 ASP 87 246 246 ASP ASP A . n A 1 88 LEU 88 247 247 LEU LEU A . n A 1 89 ALA 89 248 248 ALA ALA A . n A 1 90 VAL 90 249 249 VAL VAL A . n A 1 91 TYR 91 250 250 TYR TYR A . n A 1 92 TYR 92 251 251 TYR TYR A . n A 1 93 CYS 93 252 252 CYS CYS A . n A 1 94 LYS 94 253 253 LYS LYS A . n A 1 95 GLN 95 254 254 GLN GLN A . n A 1 96 SER 96 255 255 SER SER A . n A 1 97 TYR 97 256 256 TYR TYR A . n A 1 98 TYR 98 257 257 TYR TYR A . n A 1 99 HIS 99 258 258 HIS HIS A . n A 1 100 MET 100 259 259 MET MET A . n A 1 101 TYR 101 260 260 TYR TYR A . n A 1 102 THR 102 261 261 THR THR A . n A 1 103 PHE 103 262 262 PHE PHE A . n A 1 104 GLY 104 263 263 GLY GLY A . n A 1 105 SER 105 264 264 SER SER A . n A 1 106 GLY 106 265 265 GLY GLY A . n A 1 107 THR 107 266 266 THR THR A . n A 1 108 LYS 108 267 267 LYS LYS A . n A 1 109 LEU 109 268 268 LEU LEU A . n A 1 110 GLU 110 269 269 GLU GLU A . n A 1 111 ILE 111 270 270 ILE ILE A . n A 1 112 LYS 112 271 271 LYS LYS A . n B 1 1 LEU 1 160 160 LEU LEU B . n B 1 2 VAL 2 161 161 VAL VAL B . n B 1 3 MET 3 162 162 MET MET B . n B 1 4 SER 4 163 163 SER SER B . n B 1 5 GLN 5 164 164 GLN GLN B . n B 1 6 SER 6 165 165 SER SER B . n B 1 7 PRO 7 166 166 PRO PRO B . n B 1 8 SER 8 167 167 SER SER B . n B 1 9 SER 9 168 168 SER SER B . n B 1 10 LEU 10 169 169 LEU LEU B . n B 1 11 ALA 11 170 170 ALA ALA B . n B 1 12 VAL 12 171 171 VAL VAL B . n B 1 13 SER 13 172 172 SER SER B . n B 1 14 ALA 14 173 173 ALA ALA B . n B 1 15 GLY 15 174 174 GLY GLY B . n B 1 16 GLU 16 175 175 GLU GLU B . n B 1 17 LYS 17 176 176 LYS LYS B . n B 1 18 VAL 18 177 177 VAL VAL B . n B 1 19 THR 19 178 178 THR THR B . n B 1 20 MET 20 179 179 MET MET B . n B 1 21 SER 21 180 180 SER SER B . n B 1 22 CYS 22 181 181 CYS CYS B . n B 1 23 LYS 23 182 182 LYS LYS B . n B 1 24 SER 24 183 183 SER SER B . n B 1 25 SER 25 184 184 SER SER B . n B 1 26 GLN 26 185 185 GLN GLN B . n B 1 27 SER 27 186 186 SER SER B . n B 1 28 LEU 28 187 187 LEU LEU B . n B 1 29 PHE 29 188 188 PHE PHE B . n B 1 30 ASN 30 189 189 ASN ASN B . n B 1 31 SER 31 190 190 SER SER B . n B 1 32 ARG 32 191 191 ARG ARG B . n B 1 33 THR 33 192 192 THR THR B . n B 1 34 ARG 34 193 193 ARG ARG B . n B 1 35 LYS 35 194 194 LYS LYS B . n B 1 36 ASN 36 195 195 ASN ASN B . n B 1 37 TYR 37 196 196 TYR TYR B . n B 1 38 LEU 38 197 197 LEU LEU B . n B 1 39 ALA 39 198 198 ALA ALA B . n B 1 40 TRP 40 199 199 TRP TRP B . n B 1 41 TYR 41 200 200 TYR TYR B . n B 1 42 GLN 42 201 201 GLN GLN B . n B 1 43 GLN 43 202 202 GLN GLN B . n B 1 44 LYS 44 203 203 LYS LYS B . n B 1 45 PRO 45 204 204 PRO PRO B . n B 1 46 GLY 46 205 205 GLY GLY B . n B 1 47 GLN 47 206 206 GLN GLN B . n B 1 48 SER 48 207 207 SER SER B . n B 1 49 PRO 49 208 208 PRO PRO B . n B 1 50 LYS 50 209 209 LYS LYS B . n B 1 51 LEU 51 210 210 LEU LEU B . n B 1 52 LEU 52 211 211 LEU LEU B . n B 1 53 ILE 53 212 212 ILE ILE B . n B 1 54 TYR 54 213 213 TYR TYR B . n B 1 55 TRP 55 214 214 TRP TRP B . n B 1 56 ALA 56 215 215 ALA ALA B . n B 1 57 SER 57 216 216 SER SER B . n B 1 58 THR 58 217 217 THR THR B . n B 1 59 ARG 59 218 218 ARG ARG B . n B 1 60 GLU 60 219 219 GLU GLU B . n B 1 61 SER 61 220 220 SER SER B . n B 1 62 GLY 62 221 221 GLY GLY B . n B 1 63 VAL 63 222 222 VAL VAL B . n B 1 64 PRO 64 223 223 PRO PRO B . n B 1 65 ASP 65 224 224 ASP ASP B . n B 1 66 ARG 66 225 225 ARG ARG B . n B 1 67 PHE 67 226 226 PHE PHE B . n B 1 68 THR 68 227 227 THR THR B . n B 1 69 GLY 69 228 228 GLY GLY B . n B 1 70 SER 70 229 229 SER SER B . n B 1 71 GLY 71 230 230 GLY GLY B . n B 1 72 SER 72 231 231 SER SER B . n B 1 73 GLY 73 232 232 GLY GLY B . n B 1 74 THR 74 233 233 THR THR B . n B 1 75 ASP 75 234 234 ASP ASP B . n B 1 76 PHE 76 235 235 PHE PHE B . n B 1 77 THR 77 236 236 THR THR B . n B 1 78 LEU 78 237 237 LEU LEU B . n B 1 79 THR 79 238 238 THR THR B . n B 1 80 ILE 80 239 239 ILE ILE B . n B 1 81 SER 81 240 240 SER SER B . n B 1 82 SER 82 241 241 SER SER B . n B 1 83 VAL 83 242 242 VAL VAL B . n B 1 84 GLN 84 243 243 GLN GLN B . n B 1 85 ALA 85 244 244 ALA ALA B . n B 1 86 GLU 86 245 245 GLU GLU B . n B 1 87 ASP 87 246 246 ASP ASP B . n B 1 88 LEU 88 247 247 LEU LEU B . n B 1 89 ALA 89 248 248 ALA ALA B . n B 1 90 VAL 90 249 249 VAL VAL B . n B 1 91 TYR 91 250 250 TYR TYR B . n B 1 92 TYR 92 251 251 TYR TYR B . n B 1 93 CYS 93 252 252 CYS CYS B . n B 1 94 LYS 94 253 253 LYS LYS B . n B 1 95 GLN 95 254 254 GLN GLN B . n B 1 96 SER 96 255 255 SER SER B . n B 1 97 TYR 97 256 256 TYR TYR B . n B 1 98 TYR 98 257 ? ? ? B . n B 1 99 HIS 99 258 ? ? ? B . n B 1 100 MET 100 259 ? ? ? B . n B 1 101 TYR 101 260 ? ? ? B . n B 1 102 THR 102 261 261 THR THR B . n B 1 103 PHE 103 262 262 PHE PHE B . n B 1 104 GLY 104 263 263 GLY GLY B . n B 1 105 SER 105 264 264 SER SER B . n B 1 106 GLY 106 265 265 GLY GLY B . n B 1 107 THR 107 266 266 THR THR B . n B 1 108 LYS 108 267 267 LYS LYS B . n B 1 109 LEU 109 268 268 LEU LEU B . n B 1 110 GLU 110 269 269 GLU GLU B . n B 1 111 ILE 111 270 270 ILE ILE B . n B 1 112 LYS 112 271 271 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD 1 2 2 CD CD A . D 3 BTB 1 1 1 BTB BTB A . E 2 CD 1 1 1 CD CD B . F 4 HOH 1 3 3 HOH TIP A . F 4 HOH 2 4 4 HOH TIP A . F 4 HOH 3 7 7 HOH TIP A . F 4 HOH 4 11 11 HOH TIP A . F 4 HOH 5 12 12 HOH TIP A . F 4 HOH 6 16 16 HOH TIP A . F 4 HOH 7 18 18 HOH TIP A . F 4 HOH 8 22 22 HOH TIP A . F 4 HOH 9 23 23 HOH TIP A . F 4 HOH 10 27 27 HOH TIP A . F 4 HOH 11 28 28 HOH TIP A . F 4 HOH 12 33 33 HOH TIP A . F 4 HOH 13 34 34 HOH TIP A . F 4 HOH 14 35 35 HOH TIP A . F 4 HOH 15 36 36 HOH TIP A . F 4 HOH 16 39 39 HOH TIP A . F 4 HOH 17 40 40 HOH TIP A . F 4 HOH 18 42 42 HOH TIP A . F 4 HOH 19 43 43 HOH TIP A . F 4 HOH 20 48 48 HOH TIP A . F 4 HOH 21 50 50 HOH TIP A . F 4 HOH 22 52 52 HOH TIP A . F 4 HOH 23 53 53 HOH TIP A . F 4 HOH 24 54 54 HOH TIP A . F 4 HOH 25 55 55 HOH TIP A . F 4 HOH 26 56 56 HOH TIP A . F 4 HOH 27 57 57 HOH TIP A . F 4 HOH 28 58 58 HOH TIP A . F 4 HOH 29 59 59 HOH TIP A . F 4 HOH 30 60 60 HOH TIP A . F 4 HOH 31 62 62 HOH TIP A . F 4 HOH 32 63 63 HOH TIP A . F 4 HOH 33 69 69 HOH TIP A . F 4 HOH 34 70 70 HOH TIP A . F 4 HOH 35 71 71 HOH TIP A . F 4 HOH 36 76 76 HOH TIP A . F 4 HOH 37 77 77 HOH TIP A . F 4 HOH 38 83 83 HOH TIP A . F 4 HOH 39 85 85 HOH TIP A . F 4 HOH 40 89 89 HOH TIP A . F 4 HOH 41 91 91 HOH TIP A . F 4 HOH 42 93 93 HOH TIP A . F 4 HOH 43 94 94 HOH TIP A . F 4 HOH 44 95 95 HOH TIP A . F 4 HOH 45 96 96 HOH TIP A . F 4 HOH 46 104 104 HOH TIP A . F 4 HOH 47 105 105 HOH TIP A . F 4 HOH 48 106 106 HOH TIP A . F 4 HOH 49 107 107 HOH TIP A . G 4 HOH 1 6 6 HOH TIP B . G 4 HOH 2 9 9 HOH TIP B . G 4 HOH 3 10 10 HOH TIP B . G 4 HOH 4 13 13 HOH TIP B . G 4 HOH 5 14 14 HOH TIP B . G 4 HOH 6 15 15 HOH TIP B . G 4 HOH 7 17 17 HOH TIP B . G 4 HOH 8 19 19 HOH TIP B . G 4 HOH 9 20 20 HOH TIP B . G 4 HOH 10 21 21 HOH TIP B . G 4 HOH 11 26 26 HOH TIP B . G 4 HOH 12 29 29 HOH TIP B . G 4 HOH 13 30 30 HOH TIP B . G 4 HOH 14 31 31 HOH TIP B . G 4 HOH 15 32 32 HOH TIP B . G 4 HOH 16 37 37 HOH TIP B . G 4 HOH 17 38 38 HOH TIP B . G 4 HOH 18 41 41 HOH TIP B . G 4 HOH 19 44 44 HOH TIP B . G 4 HOH 20 45 45 HOH TIP B . G 4 HOH 21 46 46 HOH TIP B . G 4 HOH 22 47 47 HOH TIP B . G 4 HOH 23 49 49 HOH TIP B . G 4 HOH 24 51 51 HOH TIP B . G 4 HOH 25 65 65 HOH TIP B . G 4 HOH 26 66 66 HOH TIP B . G 4 HOH 27 68 68 HOH TIP B . G 4 HOH 28 72 72 HOH TIP B . G 4 HOH 29 73 73 HOH TIP B . G 4 HOH 30 74 74 HOH TIP B . G 4 HOH 31 75 75 HOH TIP B . G 4 HOH 32 78 78 HOH TIP B . G 4 HOH 33 79 79 HOH TIP B . G 4 HOH 34 80 80 HOH TIP B . G 4 HOH 35 81 81 HOH TIP B . G 4 HOH 36 82 82 HOH TIP B . G 4 HOH 37 84 84 HOH TIP B . G 4 HOH 38 86 86 HOH TIP B . G 4 HOH 39 87 87 HOH TIP B . G 4 HOH 40 88 88 HOH TIP B . G 4 HOH 41 97 97 HOH TIP B . G 4 HOH 42 98 98 HOH TIP B . G 4 HOH 43 99 99 HOH TIP B . G 4 HOH 44 100 100 HOH TIP B . G 4 HOH 45 101 101 HOH TIP B . G 4 HOH 46 103 103 HOH TIP B . G 4 HOH 47 108 108 HOH TIP B . G 4 HOH 48 109 109 HOH TIP B . G 4 HOH 49 110 110 HOH TIP B . G 4 HOH 50 111 111 HOH TIP B . G 4 HOH 51 112 112 HOH TIP B . G 4 HOH 52 113 113 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3BD4 _cell.length_a 61.852 _cell.length_b 61.852 _cell.length_c 92.090 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BD4 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3BD4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_percent_sol 39.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '30 PEG 3350, 0.1M bis-tris, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2006-12-16 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.2 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 6C1' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 6C1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.2 # _reflns.entry_id 3BD4 _reflns.observed_criterion_sigma_F -3.0 _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 50 _reflns.number_all 8425 _reflns.number_obs 8273 _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.062 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 96.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.553 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3BD4 _refine.ls_d_res_high 2.4 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7706 _refine.ls_number_reflns_R_free 827 _refine.ls_percent_reflns_obs 92.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2128 _refine.ls_R_factor_R_work 0.2128 _refine.ls_R_factor_R_free 0.2811 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ID 2GKI' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1708 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 101 _refine_hist.number_atoms_total 1825 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 1.22 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.4 _refine_ls_shell.d_res_low 2.45 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.3214 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3570 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 355 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3BD4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3BD4 _struct.title ;Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BD4 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'beta sandwich, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3BD4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTI SSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession 3BD4 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BD4 A 1 ? 112 ? 3BD4 160 ? 271 ? 160 271 2 1 3BD4 B 1 ? 112 ? 3BD4 160 ? 271 ? 160 271 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 1920 ? 3 MORE -19.4 ? 3 'SSA (A^2)' 10460 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,F 2 1 B,E,G 3 1 A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 84 ? LEU A 88 ? GLN A 243 LEU A 247 5 ? 5 HELX_P HELX_P2 2 GLN B 84 ? LEU B 88 ? GLN B 243 LEU B 247 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 93 SG ? ? A CYS 181 A CYS 252 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf2 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 93 SG ? ? B CYS 181 B CYS 252 1_555 ? ? ? ? ? ? ? 2.034 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 22 ? CYS A 93 ? CYS A 181 ? 1_555 CYS A 252 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 22 ? CYS B 93 ? CYS B 181 ? 1_555 CYS B 252 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 6 A . ? SER 165 A PRO 7 A ? PRO 166 A 1 0.04 2 SER 6 B . ? SER 165 B PRO 7 B ? PRO 166 B 1 -0.31 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 2 ? E ? 4 ? F ? 6 ? G ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel F 4 5 ? anti-parallel F 5 6 ? anti-parallel G 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 3 ? SER A 6 ? MET A 162 SER A 165 A 2 VAL A 18 ? SER A 24 ? VAL A 177 SER A 183 A 3 ASP A 75 ? ILE A 80 ? ASP A 234 ILE A 239 A 4 PHE A 67 ? SER A 72 ? PHE A 226 SER A 231 B 1 SER A 9 ? VAL A 12 ? SER A 168 VAL A 171 B 2 THR A 107 ? ILE A 111 ? THR A 266 ILE A 270 B 3 ALA A 89 ? GLN A 95 ? ALA A 248 GLN A 254 B 4 LEU A 38 ? GLN A 43 ? LEU A 197 GLN A 202 B 5 LYS A 50 ? TYR A 54 ? LYS A 209 TYR A 213 B 6 THR A 58 ? ARG A 59 ? THR A 217 ARG A 218 C 1 SER A 9 ? VAL A 12 ? SER A 168 VAL A 171 C 2 THR A 107 ? ILE A 111 ? THR A 266 ILE A 270 C 3 ALA A 89 ? GLN A 95 ? ALA A 248 GLN A 254 C 4 THR A 102 ? PHE A 103 ? THR A 261 PHE A 262 D 1 PHE A 29 ? ASN A 30 ? PHE A 188 ASN A 189 D 2 LYS A 35 ? ASN A 36 ? LYS A 194 ASN A 195 E 1 MET B 3 ? SER B 6 ? MET B 162 SER B 165 E 2 VAL B 18 ? SER B 24 ? VAL B 177 SER B 183 E 3 ASP B 75 ? ILE B 80 ? ASP B 234 ILE B 239 E 4 PHE B 67 ? SER B 72 ? PHE B 226 SER B 231 F 1 SER B 9 ? VAL B 12 ? SER B 168 VAL B 171 F 2 THR B 107 ? ILE B 111 ? THR B 266 ILE B 270 F 3 ALA B 89 ? GLN B 95 ? ALA B 248 GLN B 254 F 4 LEU B 38 ? GLN B 43 ? LEU B 197 GLN B 202 F 5 PRO B 49 ? TYR B 54 ? PRO B 208 TYR B 213 F 6 THR B 58 ? ARG B 59 ? THR B 217 ARG B 218 G 1 PHE B 29 ? ASN B 30 ? PHE B 188 ASN B 189 G 2 LYS B 35 ? ASN B 36 ? LYS B 194 ASN B 195 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 4 ? N SER A 163 O LYS A 23 ? O LYS A 182 A 2 3 N MET A 20 ? N MET A 179 O LEU A 78 ? O LEU A 237 A 3 4 O THR A 79 ? O THR A 238 N THR A 68 ? N THR A 227 B 1 2 N LEU A 10 ? N LEU A 169 O GLU A 110 ? O GLU A 269 B 2 3 O THR A 107 ? O THR A 266 N TYR A 91 ? N TYR A 250 B 3 4 O TYR A 92 ? O TYR A 251 N TYR A 41 ? N TYR A 200 B 4 5 N GLN A 42 ? N GLN A 201 O LYS A 50 ? O LYS A 209 B 5 6 N TYR A 54 ? N TYR A 213 O THR A 58 ? O THR A 217 C 1 2 N LEU A 10 ? N LEU A 169 O GLU A 110 ? O GLU A 269 C 2 3 O THR A 107 ? O THR A 266 N TYR A 91 ? N TYR A 250 C 3 4 N GLN A 95 ? N GLN A 254 O THR A 102 ? O THR A 261 D 1 2 N ASN A 30 ? N ASN A 189 O LYS A 35 ? O LYS A 194 E 1 2 N SER B 4 ? N SER B 163 O LYS B 23 ? O LYS B 182 E 2 3 N CYS B 22 ? N CYS B 181 O PHE B 76 ? O PHE B 235 E 3 4 O THR B 79 ? O THR B 238 N THR B 68 ? N THR B 227 F 1 2 N LEU B 10 ? N LEU B 169 O LYS B 108 ? O LYS B 267 F 2 3 O LEU B 109 ? O LEU B 268 N ALA B 89 ? N ALA B 248 F 3 4 O TYR B 92 ? O TYR B 251 N TYR B 41 ? N TYR B 200 F 4 5 N TRP B 40 ? N TRP B 199 O LEU B 52 ? O LEU B 211 F 5 6 N TYR B 54 ? N TYR B 213 O THR B 58 ? O THR B 217 G 1 2 N ASN B 30 ? N ASN B 189 O LYS B 35 ? O LYS B 194 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CD 1 ? 3 'BINDING SITE FOR RESIDUE CD B 1' AC2 Software A CD 2 ? 3 'BINDING SITE FOR RESIDUE CD A 2' AC3 Software A BTB 1 ? 10 'BINDING SITE FOR RESIDUE BTB A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HOH G . ? HOH B 80 . ? 1_555 ? 2 AC1 3 HOH G . ? HOH B 81 . ? 1_555 ? 3 AC1 3 SER B 96 ? SER B 255 . ? 1_555 ? 4 AC2 3 LEU A 38 ? LEU A 197 . ? 1_555 ? 5 AC2 3 TRP A 55 ? TRP A 214 . ? 1_555 ? 6 AC2 3 SER A 96 ? SER A 255 . ? 1_555 ? 7 AC3 10 HOH F . ? HOH A 4 . ? 1_555 ? 8 AC3 10 HOH F . ? HOH A 27 . ? 1_555 ? 9 AC3 10 TYR A 41 ? TYR A 200 . ? 1_555 ? 10 AC3 10 LEU A 51 ? LEU A 210 . ? 1_555 ? 11 AC3 10 TYR A 54 ? TYR A 213 . ? 1_555 ? 12 AC3 10 TRP A 55 ? TRP A 214 . ? 1_555 ? 13 AC3 10 GLU A 60 ? GLU A 219 . ? 1_555 ? 14 AC3 10 LYS A 94 ? LYS A 253 . ? 1_555 ? 15 AC3 10 SER A 96 ? SER A 255 . ? 1_555 ? 16 AC3 10 TYR A 101 ? TYR A 260 . ? 1_555 ? # _pdbx_entry_details.entry_id 3BD4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 193 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 193 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.03 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 185 ? ? -178.41 139.35 2 1 ALA A 215 ? ? 64.94 -34.12 3 1 ASP A 224 ? ? -65.62 12.38 4 1 LEU A 247 ? ? -51.94 108.61 5 1 ALA A 248 ? ? -175.48 -179.26 6 1 ALA B 215 ? ? 70.12 -40.92 7 1 SER B 241 ? ? 33.86 87.91 8 1 ALA B 248 ? ? 172.16 178.17 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B TYR 257 ? B TYR 98 2 1 Y 1 B HIS 258 ? B HIS 99 3 1 Y 1 B MET 259 ? B MET 100 4 1 Y 1 B TYR 260 ? B TYR 101 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BTB C1 C N N 74 BTB O1 O N N 75 BTB C2 C N N 76 BTB C3 C N N 77 BTB O3 O N N 78 BTB C4 C N N 79 BTB O4 O N N 80 BTB N N N N 81 BTB C5 C N N 82 BTB C6 C N N 83 BTB O6 O N N 84 BTB C7 C N N 85 BTB C8 C N N 86 BTB O8 O N N 87 BTB H11 H N N 88 BTB H12 H N N 89 BTB HO1 H N N 90 BTB H31 H N N 91 BTB H32 H N N 92 BTB HO3 H N N 93 BTB H41 H N N 94 BTB H42 H N N 95 BTB HO4 H N N 96 BTB H51 H N N 97 BTB H52 H N N 98 BTB H61 H N N 99 BTB H62 H N N 100 BTB HO6 H N N 101 BTB H71 H N N 102 BTB H72 H N N 103 BTB H81 H N N 104 BTB H82 H N N 105 BTB HO8 H N N 106 CD CD CD N N 107 CYS N N N N 108 CYS CA C N R 109 CYS C C N N 110 CYS O O N N 111 CYS CB C N N 112 CYS SG S N N 113 CYS OXT O N N 114 CYS H H N N 115 CYS H2 H N N 116 CYS HA H N N 117 CYS HB2 H N N 118 CYS HB3 H N N 119 CYS HG H N N 120 CYS HXT H N N 121 GLN N N N N 122 GLN CA C N S 123 GLN C C N N 124 GLN O O N N 125 GLN CB C N N 126 GLN CG C N N 127 GLN CD C N N 128 GLN OE1 O N N 129 GLN NE2 N N N 130 GLN OXT O N N 131 GLN H H N N 132 GLN H2 H N N 133 GLN HA H N N 134 GLN HB2 H N N 135 GLN HB3 H N N 136 GLN HG2 H N N 137 GLN HG3 H N N 138 GLN HE21 H N N 139 GLN HE22 H N N 140 GLN HXT H N N 141 GLU N N N N 142 GLU CA C N S 143 GLU C C N N 144 GLU O O N N 145 GLU CB C N N 146 GLU CG C N N 147 GLU CD C N N 148 GLU OE1 O N N 149 GLU OE2 O N N 150 GLU OXT O N N 151 GLU H H N N 152 GLU H2 H N N 153 GLU HA H N N 154 GLU HB2 H N N 155 GLU HB3 H N N 156 GLU HG2 H N N 157 GLU HG3 H N N 158 GLU HE2 H N N 159 GLU HXT H N N 160 GLY N N N N 161 GLY CA C N N 162 GLY C C N N 163 GLY O O N N 164 GLY OXT O N N 165 GLY H H N N 166 GLY H2 H N N 167 GLY HA2 H N N 168 GLY HA3 H N N 169 GLY HXT H N N 170 HIS N N N N 171 HIS CA C N S 172 HIS C C N N 173 HIS O O N N 174 HIS CB C N N 175 HIS CG C Y N 176 HIS ND1 N Y N 177 HIS CD2 C Y N 178 HIS CE1 C Y N 179 HIS NE2 N Y N 180 HIS OXT O N N 181 HIS H H N N 182 HIS H2 H N N 183 HIS HA H N N 184 HIS HB2 H N N 185 HIS HB3 H N N 186 HIS HD1 H N N 187 HIS HD2 H N N 188 HIS HE1 H N N 189 HIS HE2 H N N 190 HIS HXT H N N 191 HOH O O N N 192 HOH H1 H N N 193 HOH H2 H N N 194 ILE N N N N 195 ILE CA C N S 196 ILE C C N N 197 ILE O O N N 198 ILE CB C N S 199 ILE CG1 C N N 200 ILE CG2 C N N 201 ILE CD1 C N N 202 ILE OXT O N N 203 ILE H H N N 204 ILE H2 H N N 205 ILE HA H N N 206 ILE HB H N N 207 ILE HG12 H N N 208 ILE HG13 H N N 209 ILE HG21 H N N 210 ILE HG22 H N N 211 ILE HG23 H N N 212 ILE HD11 H N N 213 ILE HD12 H N N 214 ILE HD13 H N N 215 ILE HXT H N N 216 LEU N N N N 217 LEU CA C N S 218 LEU C C N N 219 LEU O O N N 220 LEU CB C N N 221 LEU CG C N N 222 LEU CD1 C N N 223 LEU CD2 C N N 224 LEU OXT O N N 225 LEU H H N N 226 LEU H2 H N N 227 LEU HA H N N 228 LEU HB2 H N N 229 LEU HB3 H N N 230 LEU HG H N N 231 LEU HD11 H N N 232 LEU HD12 H N N 233 LEU HD13 H N N 234 LEU HD21 H N N 235 LEU HD22 H N N 236 LEU HD23 H N N 237 LEU HXT H N N 238 LYS N N N N 239 LYS CA C N S 240 LYS C C N N 241 LYS O O N N 242 LYS CB C N N 243 LYS CG C N N 244 LYS CD C N N 245 LYS CE C N N 246 LYS NZ N N N 247 LYS OXT O N N 248 LYS H H N N 249 LYS H2 H N N 250 LYS HA H N N 251 LYS HB2 H N N 252 LYS HB3 H N N 253 LYS HG2 H N N 254 LYS HG3 H N N 255 LYS HD2 H N N 256 LYS HD3 H N N 257 LYS HE2 H N N 258 LYS HE3 H N N 259 LYS HZ1 H N N 260 LYS HZ2 H N N 261 LYS HZ3 H N N 262 LYS HXT H N N 263 MET N N N N 264 MET CA C N S 265 MET C C N N 266 MET O O N N 267 MET CB C N N 268 MET CG C N N 269 MET SD S N N 270 MET CE C N N 271 MET OXT O N N 272 MET H H N N 273 MET H2 H N N 274 MET HA H N N 275 MET HB2 H N N 276 MET HB3 H N N 277 MET HG2 H N N 278 MET HG3 H N N 279 MET HE1 H N N 280 MET HE2 H N N 281 MET HE3 H N N 282 MET HXT H N N 283 PHE N N N N 284 PHE CA C N S 285 PHE C C N N 286 PHE O O N N 287 PHE CB C N N 288 PHE CG C Y N 289 PHE CD1 C Y N 290 PHE CD2 C Y N 291 PHE CE1 C Y N 292 PHE CE2 C Y N 293 PHE CZ C Y N 294 PHE OXT O N N 295 PHE H H N N 296 PHE H2 H N N 297 PHE HA H N N 298 PHE HB2 H N N 299 PHE HB3 H N N 300 PHE HD1 H N N 301 PHE HD2 H N N 302 PHE HE1 H N N 303 PHE HE2 H N N 304 PHE HZ H N N 305 PHE HXT H N N 306 PRO N N N N 307 PRO CA C N S 308 PRO C C N N 309 PRO O O N N 310 PRO CB C N N 311 PRO CG C N N 312 PRO CD C N N 313 PRO OXT O N N 314 PRO H H N N 315 PRO HA H N N 316 PRO HB2 H N N 317 PRO HB3 H N N 318 PRO HG2 H N N 319 PRO HG3 H N N 320 PRO HD2 H N N 321 PRO HD3 H N N 322 PRO HXT H N N 323 SER N N N N 324 SER CA C N S 325 SER C C N N 326 SER O O N N 327 SER CB C N N 328 SER OG O N N 329 SER OXT O N N 330 SER H H N N 331 SER H2 H N N 332 SER HA H N N 333 SER HB2 H N N 334 SER HB3 H N N 335 SER HG H N N 336 SER HXT H N N 337 THR N N N N 338 THR CA C N S 339 THR C C N N 340 THR O O N N 341 THR CB C N R 342 THR OG1 O N N 343 THR CG2 C N N 344 THR OXT O N N 345 THR H H N N 346 THR H2 H N N 347 THR HA H N N 348 THR HB H N N 349 THR HG1 H N N 350 THR HG21 H N N 351 THR HG22 H N N 352 THR HG23 H N N 353 THR HXT H N N 354 TRP N N N N 355 TRP CA C N S 356 TRP C C N N 357 TRP O O N N 358 TRP CB C N N 359 TRP CG C Y N 360 TRP CD1 C Y N 361 TRP CD2 C Y N 362 TRP NE1 N Y N 363 TRP CE2 C Y N 364 TRP CE3 C Y N 365 TRP CZ2 C Y N 366 TRP CZ3 C Y N 367 TRP CH2 C Y N 368 TRP OXT O N N 369 TRP H H N N 370 TRP H2 H N N 371 TRP HA H N N 372 TRP HB2 H N N 373 TRP HB3 H N N 374 TRP HD1 H N N 375 TRP HE1 H N N 376 TRP HE3 H N N 377 TRP HZ2 H N N 378 TRP HZ3 H N N 379 TRP HH2 H N N 380 TRP HXT H N N 381 TYR N N N N 382 TYR CA C N S 383 TYR C C N N 384 TYR O O N N 385 TYR CB C N N 386 TYR CG C Y N 387 TYR CD1 C Y N 388 TYR CD2 C Y N 389 TYR CE1 C Y N 390 TYR CE2 C Y N 391 TYR CZ C Y N 392 TYR OH O N N 393 TYR OXT O N N 394 TYR H H N N 395 TYR H2 H N N 396 TYR HA H N N 397 TYR HB2 H N N 398 TYR HB3 H N N 399 TYR HD1 H N N 400 TYR HD2 H N N 401 TYR HE1 H N N 402 TYR HE2 H N N 403 TYR HH H N N 404 TYR HXT H N N 405 VAL N N N N 406 VAL CA C N S 407 VAL C C N N 408 VAL O O N N 409 VAL CB C N N 410 VAL CG1 C N N 411 VAL CG2 C N N 412 VAL OXT O N N 413 VAL H H N N 414 VAL H2 H N N 415 VAL HA H N N 416 VAL HB H N N 417 VAL HG11 H N N 418 VAL HG12 H N N 419 VAL HG13 H N N 420 VAL HG21 H N N 421 VAL HG22 H N N 422 VAL HG23 H N N 423 VAL HXT H N N 424 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BTB C1 O1 sing N N 70 BTB C1 C2 sing N N 71 BTB C1 H11 sing N N 72 BTB C1 H12 sing N N 73 BTB O1 HO1 sing N N 74 BTB C2 C3 sing N N 75 BTB C2 C4 sing N N 76 BTB C2 N sing N N 77 BTB C3 O3 sing N N 78 BTB C3 H31 sing N N 79 BTB C3 H32 sing N N 80 BTB O3 HO3 sing N N 81 BTB C4 O4 sing N N 82 BTB C4 H41 sing N N 83 BTB C4 H42 sing N N 84 BTB O4 HO4 sing N N 85 BTB N C5 sing N N 86 BTB N C7 sing N N 87 BTB C5 C6 sing N N 88 BTB C5 H51 sing N N 89 BTB C5 H52 sing N N 90 BTB C6 O6 sing N N 91 BTB C6 H61 sing N N 92 BTB C6 H62 sing N N 93 BTB O6 HO6 sing N N 94 BTB C7 C8 sing N N 95 BTB C7 H71 sing N N 96 BTB C7 H72 sing N N 97 BTB C8 O8 sing N N 98 BTB C8 H81 sing N N 99 BTB C8 H82 sing N N 100 BTB O8 HO8 sing N N 101 CYS N CA sing N N 102 CYS N H sing N N 103 CYS N H2 sing N N 104 CYS CA C sing N N 105 CYS CA CB sing N N 106 CYS CA HA sing N N 107 CYS C O doub N N 108 CYS C OXT sing N N 109 CYS CB SG sing N N 110 CYS CB HB2 sing N N 111 CYS CB HB3 sing N N 112 CYS SG HG sing N N 113 CYS OXT HXT sing N N 114 GLN N CA sing N N 115 GLN N H sing N N 116 GLN N H2 sing N N 117 GLN CA C sing N N 118 GLN CA CB sing N N 119 GLN CA HA sing N N 120 GLN C O doub N N 121 GLN C OXT sing N N 122 GLN CB CG sing N N 123 GLN CB HB2 sing N N 124 GLN CB HB3 sing N N 125 GLN CG CD sing N N 126 GLN CG HG2 sing N N 127 GLN CG HG3 sing N N 128 GLN CD OE1 doub N N 129 GLN CD NE2 sing N N 130 GLN NE2 HE21 sing N N 131 GLN NE2 HE22 sing N N 132 GLN OXT HXT sing N N 133 GLU N CA sing N N 134 GLU N H sing N N 135 GLU N H2 sing N N 136 GLU CA C sing N N 137 GLU CA CB sing N N 138 GLU CA HA sing N N 139 GLU C O doub N N 140 GLU C OXT sing N N 141 GLU CB CG sing N N 142 GLU CB HB2 sing N N 143 GLU CB HB3 sing N N 144 GLU CG CD sing N N 145 GLU CG HG2 sing N N 146 GLU CG HG3 sing N N 147 GLU CD OE1 doub N N 148 GLU CD OE2 sing N N 149 GLU OE2 HE2 sing N N 150 GLU OXT HXT sing N N 151 GLY N CA sing N N 152 GLY N H sing N N 153 GLY N H2 sing N N 154 GLY CA C sing N N 155 GLY CA HA2 sing N N 156 GLY CA HA3 sing N N 157 GLY C O doub N N 158 GLY C OXT sing N N 159 GLY OXT HXT sing N N 160 HIS N CA sing N N 161 HIS N H sing N N 162 HIS N H2 sing N N 163 HIS CA C sing N N 164 HIS CA CB sing N N 165 HIS CA HA sing N N 166 HIS C O doub N N 167 HIS C OXT sing N N 168 HIS CB CG sing N N 169 HIS CB HB2 sing N N 170 HIS CB HB3 sing N N 171 HIS CG ND1 sing Y N 172 HIS CG CD2 doub Y N 173 HIS ND1 CE1 doub Y N 174 HIS ND1 HD1 sing N N 175 HIS CD2 NE2 sing Y N 176 HIS CD2 HD2 sing N N 177 HIS CE1 NE2 sing Y N 178 HIS CE1 HE1 sing N N 179 HIS NE2 HE2 sing N N 180 HIS OXT HXT sing N N 181 HOH O H1 sing N N 182 HOH O H2 sing N N 183 ILE N CA sing N N 184 ILE N H sing N N 185 ILE N H2 sing N N 186 ILE CA C sing N N 187 ILE CA CB sing N N 188 ILE CA HA sing N N 189 ILE C O doub N N 190 ILE C OXT sing N N 191 ILE CB CG1 sing N N 192 ILE CB CG2 sing N N 193 ILE CB HB sing N N 194 ILE CG1 CD1 sing N N 195 ILE CG1 HG12 sing N N 196 ILE CG1 HG13 sing N N 197 ILE CG2 HG21 sing N N 198 ILE CG2 HG22 sing N N 199 ILE CG2 HG23 sing N N 200 ILE CD1 HD11 sing N N 201 ILE CD1 HD12 sing N N 202 ILE CD1 HD13 sing N N 203 ILE OXT HXT sing N N 204 LEU N CA sing N N 205 LEU N H sing N N 206 LEU N H2 sing N N 207 LEU CA C sing N N 208 LEU CA CB sing N N 209 LEU CA HA sing N N 210 LEU C O doub N N 211 LEU C OXT sing N N 212 LEU CB CG sing N N 213 LEU CB HB2 sing N N 214 LEU CB HB3 sing N N 215 LEU CG CD1 sing N N 216 LEU CG CD2 sing N N 217 LEU CG HG sing N N 218 LEU CD1 HD11 sing N N 219 LEU CD1 HD12 sing N N 220 LEU CD1 HD13 sing N N 221 LEU CD2 HD21 sing N N 222 LEU CD2 HD22 sing N N 223 LEU CD2 HD23 sing N N 224 LEU OXT HXT sing N N 225 LYS N CA sing N N 226 LYS N H sing N N 227 LYS N H2 sing N N 228 LYS CA C sing N N 229 LYS CA CB sing N N 230 LYS CA HA sing N N 231 LYS C O doub N N 232 LYS C OXT sing N N 233 LYS CB CG sing N N 234 LYS CB HB2 sing N N 235 LYS CB HB3 sing N N 236 LYS CG CD sing N N 237 LYS CG HG2 sing N N 238 LYS CG HG3 sing N N 239 LYS CD CE sing N N 240 LYS CD HD2 sing N N 241 LYS CD HD3 sing N N 242 LYS CE NZ sing N N 243 LYS CE HE2 sing N N 244 LYS CE HE3 sing N N 245 LYS NZ HZ1 sing N N 246 LYS NZ HZ2 sing N N 247 LYS NZ HZ3 sing N N 248 LYS OXT HXT sing N N 249 MET N CA sing N N 250 MET N H sing N N 251 MET N H2 sing N N 252 MET CA C sing N N 253 MET CA CB sing N N 254 MET CA HA sing N N 255 MET C O doub N N 256 MET C OXT sing N N 257 MET CB CG sing N N 258 MET CB HB2 sing N N 259 MET CB HB3 sing N N 260 MET CG SD sing N N 261 MET CG HG2 sing N N 262 MET CG HG3 sing N N 263 MET SD CE sing N N 264 MET CE HE1 sing N N 265 MET CE HE2 sing N N 266 MET CE HE3 sing N N 267 MET OXT HXT sing N N 268 PHE N CA sing N N 269 PHE N H sing N N 270 PHE N H2 sing N N 271 PHE CA C sing N N 272 PHE CA CB sing N N 273 PHE CA HA sing N N 274 PHE C O doub N N 275 PHE C OXT sing N N 276 PHE CB CG sing N N 277 PHE CB HB2 sing N N 278 PHE CB HB3 sing N N 279 PHE CG CD1 doub Y N 280 PHE CG CD2 sing Y N 281 PHE CD1 CE1 sing Y N 282 PHE CD1 HD1 sing N N 283 PHE CD2 CE2 doub Y N 284 PHE CD2 HD2 sing N N 285 PHE CE1 CZ doub Y N 286 PHE CE1 HE1 sing N N 287 PHE CE2 CZ sing Y N 288 PHE CE2 HE2 sing N N 289 PHE CZ HZ sing N N 290 PHE OXT HXT sing N N 291 PRO N CA sing N N 292 PRO N CD sing N N 293 PRO N H sing N N 294 PRO CA C sing N N 295 PRO CA CB sing N N 296 PRO CA HA sing N N 297 PRO C O doub N N 298 PRO C OXT sing N N 299 PRO CB CG sing N N 300 PRO CB HB2 sing N N 301 PRO CB HB3 sing N N 302 PRO CG CD sing N N 303 PRO CG HG2 sing N N 304 PRO CG HG3 sing N N 305 PRO CD HD2 sing N N 306 PRO CD HD3 sing N N 307 PRO OXT HXT sing N N 308 SER N CA sing N N 309 SER N H sing N N 310 SER N H2 sing N N 311 SER CA C sing N N 312 SER CA CB sing N N 313 SER CA HA sing N N 314 SER C O doub N N 315 SER C OXT sing N N 316 SER CB OG sing N N 317 SER CB HB2 sing N N 318 SER CB HB3 sing N N 319 SER OG HG sing N N 320 SER OXT HXT sing N N 321 THR N CA sing N N 322 THR N H sing N N 323 THR N H2 sing N N 324 THR CA C sing N N 325 THR CA CB sing N N 326 THR CA HA sing N N 327 THR C O doub N N 328 THR C OXT sing N N 329 THR CB OG1 sing N N 330 THR CB CG2 sing N N 331 THR CB HB sing N N 332 THR OG1 HG1 sing N N 333 THR CG2 HG21 sing N N 334 THR CG2 HG22 sing N N 335 THR CG2 HG23 sing N N 336 THR OXT HXT sing N N 337 TRP N CA sing N N 338 TRP N H sing N N 339 TRP N H2 sing N N 340 TRP CA C sing N N 341 TRP CA CB sing N N 342 TRP CA HA sing N N 343 TRP C O doub N N 344 TRP C OXT sing N N 345 TRP CB CG sing N N 346 TRP CB HB2 sing N N 347 TRP CB HB3 sing N N 348 TRP CG CD1 doub Y N 349 TRP CG CD2 sing Y N 350 TRP CD1 NE1 sing Y N 351 TRP CD1 HD1 sing N N 352 TRP CD2 CE2 doub Y N 353 TRP CD2 CE3 sing Y N 354 TRP NE1 CE2 sing Y N 355 TRP NE1 HE1 sing N N 356 TRP CE2 CZ2 sing Y N 357 TRP CE3 CZ3 doub Y N 358 TRP CE3 HE3 sing N N 359 TRP CZ2 CH2 doub Y N 360 TRP CZ2 HZ2 sing N N 361 TRP CZ3 CH2 sing Y N 362 TRP CZ3 HZ3 sing N N 363 TRP CH2 HH2 sing N N 364 TRP OXT HXT sing N N 365 TYR N CA sing N N 366 TYR N H sing N N 367 TYR N H2 sing N N 368 TYR CA C sing N N 369 TYR CA CB sing N N 370 TYR CA HA sing N N 371 TYR C O doub N N 372 TYR C OXT sing N N 373 TYR CB CG sing N N 374 TYR CB HB2 sing N N 375 TYR CB HB3 sing N N 376 TYR CG CD1 doub Y N 377 TYR CG CD2 sing Y N 378 TYR CD1 CE1 sing Y N 379 TYR CD1 HD1 sing N N 380 TYR CD2 CE2 doub Y N 381 TYR CD2 HD2 sing N N 382 TYR CE1 CZ doub Y N 383 TYR CE1 HE1 sing N N 384 TYR CE2 CZ sing Y N 385 TYR CE2 HE2 sing N N 386 TYR CZ OH sing N N 387 TYR OH HH sing N N 388 TYR OXT HXT sing N N 389 VAL N CA sing N N 390 VAL N H sing N N 391 VAL N H2 sing N N 392 VAL CA C sing N N 393 VAL CA CB sing N N 394 VAL CA HA sing N N 395 VAL C O doub N N 396 VAL C OXT sing N N 397 VAL CB CG1 sing N N 398 VAL CB CG2 sing N N 399 VAL CB HB sing N N 400 VAL CG1 HG11 sing N N 401 VAL CG1 HG12 sing N N 402 VAL CG1 HG13 sing N N 403 VAL CG2 HG21 sing N N 404 VAL CG2 HG22 sing N N 405 VAL CG2 HG23 sing N N 406 VAL OXT HXT sing N N 407 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2GKI _pdbx_initial_refinement_model.details 'PDB ID 2GKI' # _atom_sites.entry_id 3BD4 _atom_sites.fract_transf_matrix[1][1] 0.016168 _atom_sites.fract_transf_matrix[1][2] 0.009334 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018669 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010859 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD N O S # loop_