HEADER IMMUNE SYSTEM 14-NOV-07 3BDB TITLE CRYSTAL STRUCTURE OF NOVEL IMMUNE-TYPE RECEPTOR 11 EXTRACELLULAR TITLE 2 FRAGMENT FROM ICTALURUS PUNCTATUS INCLUDING STALK REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOVEL IMMUNE-TYPE RECEPTOR 11; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: EXTRACELLULAR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ICTALURUS PUNCTATUS; SOURCE 3 ORGANISM_COMMON: CHANNEL CATFISH; SOURCE 4 STRAIN: WILD TYPE; SOURCE 5 GENE: NITR11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-BLUE1 KEYWDS IMMUNOGLOBULIN VARIABLE DOMAIN-LIKE BETA-SANDWICH, IMMUNE-TYPE KEYWDS 2 RECEPTOR, STALK REGION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.A.OSTROV,J.A.HERNANDEZ PRADA,R.N.HAIRE,J.P.CANNON,A.T.MAGIS, AUTHOR 2 K.M.BAILEY,G.W.LITMAN REVDAT 5 30-AUG-23 3BDB 1 SEQADV REVDAT 4 25-OCT-17 3BDB 1 REMARK REVDAT 3 29-DEC-09 3BDB 1 JRNL REVDAT 2 24-FEB-09 3BDB 1 VERSN REVDAT 1 24-JUN-08 3BDB 0 JRNL AUTH J.P.CANNON,R.N.HAIRE,A.T.MAGIS,D.D.EASON,K.N.WINFREY, JRNL AUTH 2 J.A.HERNANDEZ PRADA,K.M.BAILEY,J.JAKONCIC,G.W.LITMAN, JRNL AUTH 3 D.A.OSTROV JRNL TITL A BONY FISH IMMUNOLOGICAL RECEPTOR OF THE NITR MULTIGENE JRNL TITL 2 FAMILY MEDIATES ALLOGENEIC RECOGNITION. JRNL REF IMMUNITY V. 29 228 2008 JRNL REFN ISSN 1074-7613 JRNL PMID 18674935 JRNL DOI 10.1016/J.IMMUNI.2008.05.018 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 23963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.284 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1231 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4520 REMARK 3 BIN FREE R VALUE : 0.3652 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 13 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.823 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5970 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.00400 REMARK 3 B22 (A**2) : 0.58700 REMARK 3 B33 (A**2) : -10.59100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM SIGMAA (A) : 0.52 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.408 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.366 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.946 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.839 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 50.42 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : OXFORD DANFYSIK TOROIDAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24095 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, RESOLVE REMARK 200 STARTING MODEL: PDB ENTRY 2QQQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE MONOHYDRATE, 0.1M REMARK 280 TRIS HYDROCHLORIDE, 22% PEG 4000, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.79250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.66550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.67100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.66550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.79250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.67100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 129 REMARK 465 ASP A 130 REMARK 465 GLN A 131 REMARK 465 MET A 132 REMARK 465 HIS A 133 REMARK 465 VAL A 134 REMARK 465 LEU A 135 REMARK 465 VAL A 136 REMARK 465 TRP A 137 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 129 REMARK 465 ASP B 130 REMARK 465 GLN B 131 REMARK 465 MET B 132 REMARK 465 HIS B 133 REMARK 465 VAL B 134 REMARK 465 LEU B 135 REMARK 465 VAL B 136 REMARK 465 TRP B 137 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 PRO C 129 REMARK 465 ASP C 130 REMARK 465 GLN C 131 REMARK 465 MET C 132 REMARK 465 HIS C 133 REMARK 465 VAL C 134 REMARK 465 LEU C 135 REMARK 465 VAL C 136 REMARK 465 TRP C 137 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 PRO D 129 REMARK 465 ASP D 130 REMARK 465 GLN D 131 REMARK 465 MET D 132 REMARK 465 HIS D 133 REMARK 465 VAL D 134 REMARK 465 LEU D 135 REMARK 465 VAL D 136 REMARK 465 TRP D 137 REMARK 465 MET E 1 REMARK 465 ASP E 2 REMARK 465 PRO E 129 REMARK 465 ASP E 130 REMARK 465 GLN E 131 REMARK 465 MET E 132 REMARK 465 HIS E 133 REMARK 465 VAL E 134 REMARK 465 LEU E 135 REMARK 465 VAL E 136 REMARK 465 TRP E 137 REMARK 465 MET F 1 REMARK 465 ASP F 2 REMARK 465 PRO F 129 REMARK 465 ASP F 130 REMARK 465 GLN F 131 REMARK 465 MET F 132 REMARK 465 HIS F 133 REMARK 465 VAL F 134 REMARK 465 LEU F 135 REMARK 465 VAL F 136 REMARK 465 TRP F 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 11 -155.83 -159.10 REMARK 500 GLU A 15 -151.84 -52.68 REMARK 500 MET A 23 -48.31 -144.52 REMARK 500 SER A 24 86.94 35.85 REMARK 500 LYS A 25 2.51 59.39 REMARK 500 THR A 27 -113.15 -120.63 REMARK 500 PHE A 46 -49.45 -140.13 REMARK 500 TYR A 50 95.89 -162.97 REMARK 500 SER A 51 80.89 -28.37 REMARK 500 SER A 52 -160.57 -162.15 REMARK 500 ASP A 64 104.79 -165.29 REMARK 500 ASN A 72 -152.09 -168.03 REMARK 500 PHE A 76 59.09 -143.30 REMARK 500 ALA A 83 73.39 72.10 REMARK 500 ARG A 84 -65.26 -94.34 REMARK 500 GLU A 85 -40.32 157.77 REMARK 500 VAL A 96 111.66 -21.71 REMARK 500 PHE A 103 105.18 -52.03 REMARK 500 PHE A 111 -107.62 -80.53 REMARK 500 SER A 114 165.62 155.90 REMARK 500 ASN A 115 95.57 148.26 REMARK 500 GLU A 116 24.87 -143.77 REMARK 500 LYS A 119 -58.28 -160.93 REMARK 500 SER A 121 -142.81 153.72 REMARK 500 ASP A 122 -81.41 -68.13 REMARK 500 SER A 126 -83.68 -153.05 REMARK 500 SER A 127 70.53 80.91 REMARK 500 ARG B 13 99.48 -42.09 REMARK 500 GLU B 15 137.30 -31.59 REMARK 500 MET B 23 -56.40 -23.88 REMARK 500 SER B 24 76.69 -48.14 REMARK 500 LYS B 25 22.32 144.87 REMARK 500 VAL B 26 -160.67 -59.08 REMARK 500 PHE B 39 129.36 -36.60 REMARK 500 LYS B 41 -163.69 -103.99 REMARK 500 TYR B 45 130.90 -37.72 REMARK 500 PHE B 46 -46.73 -141.67 REMARK 500 SER B 51 89.51 -66.25 REMARK 500 ASP B 64 115.72 -167.81 REMARK 500 THR B 70 79.04 -104.87 REMARK 500 ASN B 72 -158.03 -143.98 REMARK 500 ALA B 83 127.00 -36.64 REMARK 500 GLU B 85 -53.88 25.80 REMARK 500 SER B 105 -165.10 -167.07 REMARK 500 GLU B 112 -12.05 128.70 REMARK 500 ASN B 115 82.24 -52.50 REMARK 500 SER B 118 -62.12 -139.99 REMARK 500 LYS B 119 48.73 -68.34 REMARK 500 GLU B 124 -158.77 164.04 REMARK 500 SER B 126 -90.70 -83.55 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 10 VAL A 11 148.38 REMARK 500 SER A 22 MET A 23 -139.15 REMARK 500 MET A 23 SER A 24 84.90 REMARK 500 ALA A 33 TRP A 34 128.62 REMARK 500 GLY A 82 ALA A 83 89.39 REMARK 500 GLU A 95 VAL A 96 149.77 REMARK 500 SER A 105 GLY A 106 142.18 REMARK 500 PHE A 111 GLU A 112 -137.96 REMARK 500 GLU A 112 GLY A 113 -127.69 REMARK 500 GLY A 113 SER A 114 144.16 REMARK 500 SER A 114 ASN A 115 -143.92 REMARK 500 SER A 120 SER A 121 133.82 REMARK 500 SER A 126 SER A 127 -127.19 REMARK 500 SER B 22 MET B 23 148.00 REMARK 500 SER B 24 LYS B 25 148.24 REMARK 500 VAL B 26 THR B 27 134.16 REMARK 500 PHE B 76 ASP B 77 -147.14 REMARK 500 SER B 105 GLY B 106 145.77 REMARK 500 PHE B 111 GLU B 112 107.89 REMARK 500 GLU B 112 GLY B 113 -41.54 REMARK 500 SER B 114 ASN B 115 91.07 REMARK 500 SER B 120 SER B 121 -100.72 REMARK 500 GLU B 124 GLY B 125 146.07 REMARK 500 GLY B 125 SER B 126 -89.39 REMARK 500 SER B 126 SER B 127 -43.91 REMARK 500 SER B 127 CYS B 128 49.31 REMARK 500 SER C 54 GLY C 55 143.81 REMARK 500 GLY C 61 PHE C 62 -140.12 REMARK 500 ALA C 83 ARG C 84 -147.02 REMARK 500 ARG C 84 GLU C 85 -121.93 REMARK 500 ILE C 99 ILE C 100 -118.68 REMARK 500 GLY C 113 SER C 114 127.17 REMARK 500 SER C 114 ASN C 115 -137.07 REMARK 500 ASN C 115 GLU C 116 145.54 REMARK 500 SER C 118 LYS C 119 -147.11 REMARK 500 ASP C 122 GLY C 123 83.08 REMARK 500 GLY C 123 GLU C 124 149.27 REMARK 500 GLU C 124 GLY C 125 95.54 REMARK 500 GLY C 125 SER C 126 43.82 REMARK 500 GLU D 20 CYS D 21 145.07 REMARK 500 LYS D 25 VAL D 26 145.84 REMARK 500 LYS D 29 ASN D 30 140.13 REMARK 500 VAL D 42 PRO D 43 -149.99 REMARK 500 MET D 69 THR D 70 148.93 REMARK 500 GLN D 74 LYS D 75 -129.07 REMARK 500 GLY D 88 GLY D 89 -130.72 REMARK 500 ILE D 101 LYS D 102 142.91 REMARK 500 SER D 105 GLY D 106 133.57 REMARK 500 GLY D 113 SER D 114 149.24 REMARK 500 LYS D 119 SER D 120 -143.95 REMARK 500 REMARK 500 THIS ENTRY HAS 74 NON CIS, NON-TRANS OMEGA OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QQQ RELATED DB: PDB REMARK 900 NOVEL IMMUNE-TYPE RECEPTOR 11 REMARK 900 RELATED ID: 2QHL RELATED DB: PDB REMARK 900 NOVEL IMMUNE-TYPE RECEPTOR 10 REMARK 900 RELATED ID: 2QTE RELATED DB: PDB REMARK 900 NOVEL IMMUNE-TYPE RECEPTOR 11 N50D REMARK 900 RELATED ID: 2QJD RELATED DB: PDB REMARK 900 NOVEL IMMUNE-TYPE RECEPTOR 10 D50N DBREF 3BDB A 2 137 UNP Q8UWK4 Q8UWK4_ICTPU 22 157 DBREF 3BDB B 2 137 UNP Q8UWK4 Q8UWK4_ICTPU 22 157 DBREF 3BDB C 2 137 UNP Q8UWK4 Q8UWK4_ICTPU 22 157 DBREF 3BDB D 2 137 UNP Q8UWK4 Q8UWK4_ICTPU 22 157 DBREF 3BDB E 2 137 UNP Q8UWK4 Q8UWK4_ICTPU 22 157 DBREF 3BDB F 2 137 UNP Q8UWK4 Q8UWK4_ICTPU 22 157 SEQADV 3BDB MET A 1 UNP Q8UWK4 INITIATING METHIONINE SEQADV 3BDB MET B 1 UNP Q8UWK4 INITIATING METHIONINE SEQADV 3BDB MET C 1 UNP Q8UWK4 INITIATING METHIONINE SEQADV 3BDB MET D 1 UNP Q8UWK4 INITIATING METHIONINE SEQADV 3BDB MET E 1 UNP Q8UWK4 INITIATING METHIONINE SEQADV 3BDB MET F 1 UNP Q8UWK4 INITIATING METHIONINE SEQRES 1 A 137 MET ASP ILE LYS GLU LEU HIS VAL LYS THR VAL LYS ARG SEQRES 2 A 137 GLY GLU ASN VAL THR MET GLU CYS SER MET SER LYS VAL SEQRES 3 A 137 THR ASN LYS ASN ASN LEU ALA TRP TYR ARG GLN SER PHE SEQRES 4 A 137 GLY LYS VAL PRO GLN TYR PHE VAL ARG TYR TYR SER SER SEQRES 5 A 137 ASN SER GLY TYR LYS PHE ALA GLU GLY PHE LYS ASP SER SEQRES 6 A 137 ARG PHE SER MET THR VAL ASN ASP GLN LYS PHE ASP LEU SEQRES 7 A 137 ASN ILE ILE GLY ALA ARG GLU ASP ASP GLY GLY GLU TYR SEQRES 8 A 137 PHE CYS GLY GLU VAL GLU GLY ILE ILE ILE LYS PHE THR SEQRES 9 A 137 SER GLY THR ARG LEU GLN PHE GLU GLY SER ASN GLU GLY SEQRES 10 A 137 SER LYS SER SER ASP GLY GLU GLY SER SER CYS PRO ASP SEQRES 11 A 137 GLN MET HIS VAL LEU VAL TRP SEQRES 1 B 137 MET ASP ILE LYS GLU LEU HIS VAL LYS THR VAL LYS ARG SEQRES 2 B 137 GLY GLU ASN VAL THR MET GLU CYS SER MET SER LYS VAL SEQRES 3 B 137 THR ASN LYS ASN ASN LEU ALA TRP TYR ARG GLN SER PHE SEQRES 4 B 137 GLY LYS VAL PRO GLN TYR PHE VAL ARG TYR TYR SER SER SEQRES 5 B 137 ASN SER GLY TYR LYS PHE ALA GLU GLY PHE LYS ASP SER SEQRES 6 B 137 ARG PHE SER MET THR VAL ASN ASP GLN LYS PHE ASP LEU SEQRES 7 B 137 ASN ILE ILE GLY ALA ARG GLU ASP ASP GLY GLY GLU TYR SEQRES 8 B 137 PHE CYS GLY GLU VAL GLU GLY ILE ILE ILE LYS PHE THR SEQRES 9 B 137 SER GLY THR ARG LEU GLN PHE GLU GLY SER ASN GLU GLY SEQRES 10 B 137 SER LYS SER SER ASP GLY GLU GLY SER SER CYS PRO ASP SEQRES 11 B 137 GLN MET HIS VAL LEU VAL TRP SEQRES 1 C 137 MET ASP ILE LYS GLU LEU HIS VAL LYS THR VAL LYS ARG SEQRES 2 C 137 GLY GLU ASN VAL THR MET GLU CYS SER MET SER LYS VAL SEQRES 3 C 137 THR ASN LYS ASN ASN LEU ALA TRP TYR ARG GLN SER PHE SEQRES 4 C 137 GLY LYS VAL PRO GLN TYR PHE VAL ARG TYR TYR SER SER SEQRES 5 C 137 ASN SER GLY TYR LYS PHE ALA GLU GLY PHE LYS ASP SER SEQRES 6 C 137 ARG PHE SER MET THR VAL ASN ASP GLN LYS PHE ASP LEU SEQRES 7 C 137 ASN ILE ILE GLY ALA ARG GLU ASP ASP GLY GLY GLU TYR SEQRES 8 C 137 PHE CYS GLY GLU VAL GLU GLY ILE ILE ILE LYS PHE THR SEQRES 9 C 137 SER GLY THR ARG LEU GLN PHE GLU GLY SER ASN GLU GLY SEQRES 10 C 137 SER LYS SER SER ASP GLY GLU GLY SER SER CYS PRO ASP SEQRES 11 C 137 GLN MET HIS VAL LEU VAL TRP SEQRES 1 D 137 MET ASP ILE LYS GLU LEU HIS VAL LYS THR VAL LYS ARG SEQRES 2 D 137 GLY GLU ASN VAL THR MET GLU CYS SER MET SER LYS VAL SEQRES 3 D 137 THR ASN LYS ASN ASN LEU ALA TRP TYR ARG GLN SER PHE SEQRES 4 D 137 GLY LYS VAL PRO GLN TYR PHE VAL ARG TYR TYR SER SER SEQRES 5 D 137 ASN SER GLY TYR LYS PHE ALA GLU GLY PHE LYS ASP SER SEQRES 6 D 137 ARG PHE SER MET THR VAL ASN ASP GLN LYS PHE ASP LEU SEQRES 7 D 137 ASN ILE ILE GLY ALA ARG GLU ASP ASP GLY GLY GLU TYR SEQRES 8 D 137 PHE CYS GLY GLU VAL GLU GLY ILE ILE ILE LYS PHE THR SEQRES 9 D 137 SER GLY THR ARG LEU GLN PHE GLU GLY SER ASN GLU GLY SEQRES 10 D 137 SER LYS SER SER ASP GLY GLU GLY SER SER CYS PRO ASP SEQRES 11 D 137 GLN MET HIS VAL LEU VAL TRP SEQRES 1 E 137 MET ASP ILE LYS GLU LEU HIS VAL LYS THR VAL LYS ARG SEQRES 2 E 137 GLY GLU ASN VAL THR MET GLU CYS SER MET SER LYS VAL SEQRES 3 E 137 THR ASN LYS ASN ASN LEU ALA TRP TYR ARG GLN SER PHE SEQRES 4 E 137 GLY LYS VAL PRO GLN TYR PHE VAL ARG TYR TYR SER SER SEQRES 5 E 137 ASN SER GLY TYR LYS PHE ALA GLU GLY PHE LYS ASP SER SEQRES 6 E 137 ARG PHE SER MET THR VAL ASN ASP GLN LYS PHE ASP LEU SEQRES 7 E 137 ASN ILE ILE GLY ALA ARG GLU ASP ASP GLY GLY GLU TYR SEQRES 8 E 137 PHE CYS GLY GLU VAL GLU GLY ILE ILE ILE LYS PHE THR SEQRES 9 E 137 SER GLY THR ARG LEU GLN PHE GLU GLY SER ASN GLU GLY SEQRES 10 E 137 SER LYS SER SER ASP GLY GLU GLY SER SER CYS PRO ASP SEQRES 11 E 137 GLN MET HIS VAL LEU VAL TRP SEQRES 1 F 137 MET ASP ILE LYS GLU LEU HIS VAL LYS THR VAL LYS ARG SEQRES 2 F 137 GLY GLU ASN VAL THR MET GLU CYS SER MET SER LYS VAL SEQRES 3 F 137 THR ASN LYS ASN ASN LEU ALA TRP TYR ARG GLN SER PHE SEQRES 4 F 137 GLY LYS VAL PRO GLN TYR PHE VAL ARG TYR TYR SER SER SEQRES 5 F 137 ASN SER GLY TYR LYS PHE ALA GLU GLY PHE LYS ASP SER SEQRES 6 F 137 ARG PHE SER MET THR VAL ASN ASP GLN LYS PHE ASP LEU SEQRES 7 F 137 ASN ILE ILE GLY ALA ARG GLU ASP ASP GLY GLY GLU TYR SEQRES 8 F 137 PHE CYS GLY GLU VAL GLU GLY ILE ILE ILE LYS PHE THR SEQRES 9 F 137 SER GLY THR ARG LEU GLN PHE GLU GLY SER ASN GLU GLY SEQRES 10 F 137 SER LYS SER SER ASP GLY GLU GLY SER SER CYS PRO ASP SEQRES 11 F 137 GLN MET HIS VAL LEU VAL TRP FORMUL 7 HOH *51(H2 O) HELIX 1 1 ASN A 28 ASN A 31 5 4 HELIX 2 2 ASN B 28 ASN B 30 5 3 HELIX 3 3 ARG B 84 GLY B 88 5 5 HELIX 4 4 ASN C 28 ASN C 30 5 3 HELIX 5 5 ARG D 84 GLY D 88 5 5 HELIX 6 6 ARG E 84 GLY E 88 5 5 HELIX 7 7 ASN F 28 ASN F 30 5 3 SHEET 1 A 6 HIS A 7 VAL A 8 0 SHEET 2 A 6 ILE A 101 LEU A 109 1 O ARG A 108 N HIS A 7 SHEET 3 A 6 GLY A 89 VAL A 96 -1 N CYS A 93 O SER A 105 SHEET 4 A 6 ALA A 33 GLN A 37 -1 N GLN A 37 O GLU A 90 SHEET 5 A 6 GLN A 44 TYR A 49 -1 O GLN A 44 N ARG A 36 SHEET 6 A 6 TYR A 56 PHE A 58 -1 O LYS A 57 N ARG A 48 SHEET 1 B 3 ASN A 16 VAL A 17 0 SHEET 2 B 3 PHE A 76 ILE A 81 -1 O ILE A 80 N VAL A 17 SHEET 3 B 3 PHE A 67 VAL A 71 -1 N SER A 68 O ASN A 79 SHEET 1 C 6 HIS B 7 VAL B 11 0 SHEET 2 C 6 ILE B 100 PHE B 111 1 O GLY B 106 N HIS B 7 SHEET 3 C 6 GLU B 90 GLU B 97 -1 N GLU B 97 O ILE B 100 SHEET 4 C 6 LEU B 32 GLN B 37 -1 N TYR B 35 O PHE B 92 SHEET 5 C 6 TYR B 45 TYR B 49 -1 O VAL B 47 N TRP B 34 SHEET 6 C 6 TYR B 56 PHE B 58 -1 O LYS B 57 N ARG B 48 SHEET 1 D 3 ASN B 16 MET B 19 0 SHEET 2 D 3 PHE B 76 ILE B 81 -1 O ILE B 80 N VAL B 17 SHEET 3 D 3 PHE B 67 VAL B 71 -1 N SER B 68 O ASN B 79 SHEET 1 E 6 HIS C 7 VAL C 11 0 SHEET 2 E 6 ILE C 101 PHE C 111 1 O GLY C 106 N HIS C 7 SHEET 3 E 6 GLU C 90 VAL C 96 -1 N CYS C 93 O THR C 104 SHEET 4 E 6 LEU C 32 GLN C 37 -1 N GLN C 37 O GLU C 90 SHEET 5 E 6 GLN C 44 TYR C 49 -1 O GLN C 44 N ARG C 36 SHEET 6 E 6 TYR C 56 PHE C 58 -1 O LYS C 57 N ARG C 48 SHEET 1 F 3 ASN C 16 MET C 19 0 SHEET 2 F 3 PHE C 76 ILE C 81 -1 O ILE C 80 N VAL C 17 SHEET 3 F 3 PHE C 67 VAL C 71 -1 N SER C 68 O ASN C 79 SHEET 1 G 6 HIS D 7 VAL D 11 0 SHEET 2 G 6 THR D 107 PHE D 111 1 O ARG D 108 N LYS D 9 SHEET 3 G 6 GLY D 89 VAL D 96 -1 N TYR D 91 O THR D 107 SHEET 4 G 6 LEU D 32 ARG D 36 -1 N ALA D 33 O GLY D 94 SHEET 5 G 6 GLN D 44 TYR D 49 -1 O GLN D 44 N ARG D 36 SHEET 6 G 6 TYR D 56 PHE D 58 -1 O LYS D 57 N ARG D 48 SHEET 1 H 4 HIS D 7 VAL D 11 0 SHEET 2 H 4 THR D 107 PHE D 111 1 O ARG D 108 N LYS D 9 SHEET 3 H 4 GLY D 89 VAL D 96 -1 N TYR D 91 O THR D 107 SHEET 4 H 4 ILE D 101 PHE D 103 -1 O LYS D 102 N GLU D 95 SHEET 1 I 3 VAL D 17 MET D 19 0 SHEET 2 I 3 PHE D 76 ILE D 80 -1 O LEU D 78 N MET D 19 SHEET 3 I 3 PHE D 67 VAL D 71 -1 N SER D 68 O ASN D 79 SHEET 1 J 5 HIS E 7 THR E 10 0 SHEET 2 J 5 ILE E 101 GLN E 110 1 O ARG E 108 N HIS E 7 SHEET 3 J 5 GLY E 89 VAL E 96 -1 N CYS E 93 O THR E 104 SHEET 4 J 5 TYR E 35 GLN E 37 -1 N GLN E 37 O GLU E 90 SHEET 5 J 5 GLN E 44 TYR E 45 -1 O GLN E 44 N ARG E 36 SHEET 1 K 3 VAL E 17 MET E 19 0 SHEET 2 K 3 PHE E 76 ILE E 80 -1 O LEU E 78 N MET E 19 SHEET 3 K 3 PHE E 67 VAL E 71 -1 N THR E 70 O ASP E 77 SHEET 1 L 2 VAL E 47 TYR E 49 0 SHEET 2 L 2 TYR E 56 PHE E 58 -1 O LYS E 57 N ARG E 48 SHEET 1 M 6 HIS F 7 THR F 10 0 SHEET 2 M 6 ILE F 100 GLN F 110 1 O GLN F 110 N LYS F 9 SHEET 3 M 6 GLY F 89 GLU F 97 -1 N GLY F 89 O LEU F 109 SHEET 4 M 6 LEU F 32 SER F 38 -1 N GLN F 37 O GLU F 90 SHEET 5 M 6 GLN F 44 TYR F 49 -1 O GLN F 44 N ARG F 36 SHEET 6 M 6 TYR F 56 PHE F 58 -1 O LYS F 57 N ARG F 48 SHEET 1 N 3 VAL F 17 MET F 19 0 SHEET 2 N 3 PHE F 76 ILE F 80 -1 O ILE F 80 N VAL F 17 SHEET 3 N 3 PHE F 67 VAL F 71 -1 N THR F 70 O ASP F 77 SSBOND 1 CYS A 21 CYS A 93 1555 1555 2.15 SSBOND 2 CYS B 21 CYS B 93 1555 1555 2.14 SSBOND 3 CYS C 21 CYS C 93 1555 1555 2.18 SSBOND 4 CYS D 21 CYS D 93 1555 1555 2.62 SSBOND 5 CYS E 21 CYS E 93 1555 1555 2.04 SSBOND 6 CYS F 21 CYS F 93 1555 1555 2.13 CISPEP 1 GLY A 125 SER A 126 0 -1.50 CISPEP 2 GLY E 117 SER E 118 0 -8.03 CISPEP 3 GLU F 112 GLY F 113 0 -12.34 CRYST1 91.585 91.342 115.331 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010919 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008671 0.00000