HEADER HYDROLASE 14-NOV-07 3BDG TITLE CRYSTAL STRUCTURE OF WILD-TYPE/T155V MIXED DIMER OF E. COLI ALKALINE TITLE 2 PHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APASE; COMPND 5 EC: 3.1.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ALKALINE PHOSPHATASE; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: APASE; COMPND 12 EC: 3.1.3.1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PHOA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 562; SOURCE 14 STRAIN: K12; SOURCE 15 GENE: PHOA; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET9H KEYWDS BACTERIAL ALKALINE PHOSPHATASE, HYDROLASE, MAGNESIUM, METAL-BINDING, KEYWDS 2 PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.GRIGG,M.E.MURPHY REVDAT 6 30-OCT-24 3BDG 1 REMARK REVDAT 5 30-AUG-23 3BDG 1 REMARK REVDAT 4 20-OCT-21 3BDG 1 REMARK SEQADV REVDAT 3 19-SEP-12 3BDG 1 VERSN REVDAT 2 24-FEB-09 3BDG 1 VERSN REVDAT 1 25-NOV-08 3BDG 0 JRNL AUTH J.C.GRIGG,C.HUCALUK,M.E.MURPHY,H.RITTER,J.YEE,S.RAFFERTY JRNL TITL THE ACTIVE-SITE TRIMETALLIC CLUSTER OF ALKALINE PHOSPHATASE JRNL TITL 2 IS LOST UPON ISOSTERIC MUTATION AT THE MG2+-COORDINATING JRNL TITL 3 RESIDUE THREONINE-155 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 181754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9114 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 514 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6355 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 1257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.800 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6714 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9154 ; 1.516 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 916 ; 6.052 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;40.763 ;25.589 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1096 ;12.793 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.622 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1043 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5119 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3630 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4744 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1009 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 63 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4536 ; 0.968 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7110 ; 1.559 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2395 ; 2.533 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2044 ; 3.972 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SIDE-SCATTERING CUBEROOT I-BEAM REMARK 200 BENT SINGLE CRYSTAL, ASYMETRIC REMARK 200 CUT 12.2 DEGS REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR, SINGLE REMARK 200 CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 181829 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ED9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 0.2 M LISO4, 1 MM ZNCL2, 5 REMARK 280 MM MGCL2, 25-30% PEG 3350, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.67500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7540 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 0 REMARK 465 THR A 1 REMARK 465 ASP A 327 REMARK 465 LYS A 328 REMARK 465 GLN A 329 REMARK 465 ASP A 330 REMARK 465 HIS A 331 REMARK 465 ALA A 332 REMARK 465 ASN A 404 REMARK 465 SER A 405 REMARK 465 GLU A 406 REMARK 465 GLU A 407 REMARK 465 ASP A 408 REMARK 465 SER A 409 REMARK 465 GLN A 410 REMARK 465 GLU A 411 REMARK 465 LEU A 450 REMARK 465 GLU A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 ARG B 0 REMARK 465 THR B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 3 REMARK 465 ASP B 327 REMARK 465 LYS B 328 REMARK 465 GLN B 329 REMARK 465 ASP B 330 REMARK 465 HIS B 331 REMARK 465 ASN B 404 REMARK 465 SER B 405 REMARK 465 GLU B 406 REMARK 465 GLU B 407 REMARK 465 ASP B 408 REMARK 465 SER B 409 REMARK 465 GLN B 410 REMARK 465 GLU B 411 REMARK 465 LEU B 450 REMARK 465 GLU B 451 REMARK 465 GLU B 452 REMARK 465 GLU B 453 REMARK 465 GLU B 454 REMARK 465 GLU B 455 REMARK 465 GLU B 456 REMARK 465 GLU B 457 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 245 O HOH A 1525 2.13 REMARK 500 O HOH A 1031 O HOH A 1596 2.15 REMARK 500 O HOH A 1041 O HOH A 1599 2.18 REMARK 500 OD2 ASP B 51 OE2 GLU B 322 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3 SO4 B 963 O HOH B 1487 2656 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 97.55 -161.58 REMARK 500 ASN B 9 103.51 -162.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 959 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 961 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 962 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 963 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BDF RELATED DB: PDB REMARK 900 RELATED ID: 3BDH RELATED DB: PDB DBREF 3BDG A 0 449 UNP P00634 PPB_ECOLI 22 471 DBREF 3BDG B 0 449 UNP P00634 PPB_ECOLI 22 471 SEQADV 3BDG VAL A 155 UNP P00634 THR 177 ENGINEERED MUTATION SEQADV 3BDG LEU A 450 UNP P00634 EXPRESSION TAG SEQADV 3BDG GLU A 451 UNP P00634 EXPRESSION TAG SEQADV 3BDG HIS A 452 UNP P00634 EXPRESSION TAG SEQADV 3BDG HIS A 453 UNP P00634 EXPRESSION TAG SEQADV 3BDG HIS A 454 UNP P00634 EXPRESSION TAG SEQADV 3BDG HIS A 455 UNP P00634 EXPRESSION TAG SEQADV 3BDG HIS A 456 UNP P00634 EXPRESSION TAG SEQADV 3BDG HIS A 457 UNP P00634 EXPRESSION TAG SEQADV 3BDG LEU B 450 UNP P00634 EXPRESSION TAG SEQADV 3BDG GLU B 451 UNP P00634 EXPRESSION TAG SEQADV 3BDG GLU B 452 UNP P00634 EXPRESSION TAG SEQADV 3BDG GLU B 453 UNP P00634 EXPRESSION TAG SEQADV 3BDG GLU B 454 UNP P00634 EXPRESSION TAG SEQADV 3BDG GLU B 455 UNP P00634 EXPRESSION TAG SEQADV 3BDG GLU B 456 UNP P00634 EXPRESSION TAG SEQADV 3BDG GLU B 457 UNP P00634 EXPRESSION TAG SEQRES 1 A 458 ARG THR PRO GLU MET PRO VAL LEU GLU ASN ARG ALA ALA SEQRES 2 A 458 GLN GLY ASP ILE THR ALA PRO GLY GLY ALA ARG ARG LEU SEQRES 3 A 458 THR GLY ASP GLN THR ALA ALA LEU ARG ASP SER LEU SER SEQRES 4 A 458 ASP LYS PRO ALA LYS ASN ILE ILE LEU LEU ILE GLY ASP SEQRES 5 A 458 GLY MET GLY ASP SER GLU ILE THR ALA ALA ARG ASN TYR SEQRES 6 A 458 ALA GLU GLY ALA GLY GLY PHE PHE LYS GLY ILE ASP ALA SEQRES 7 A 458 LEU PRO LEU THR GLY GLN TYR THR HIS TYR ALA LEU ASN SEQRES 8 A 458 LYS LYS THR GLY LYS PRO ASP TYR VAL THR ASP SER ALA SEQRES 9 A 458 ALA SER ALA THR ALA TRP SER THR GLY VAL LYS THR TYR SEQRES 10 A 458 ASN GLY ALA LEU GLY VAL ASP ILE HIS GLU LYS ASP HIS SEQRES 11 A 458 PRO THR ILE LEU GLU MET ALA LYS ALA ALA GLY LEU ALA SEQRES 12 A 458 THR GLY ASN VAL SER THR ALA GLU LEU GLN ASP ALA VAL SEQRES 13 A 458 PRO ALA ALA LEU VAL ALA HIS VAL THR SER ARG LYS CYS SEQRES 14 A 458 TYR GLY PRO SER ALA THR SER GLU LYS CYS PRO GLY ASN SEQRES 15 A 458 ALA LEU GLU LYS GLY GLY LYS GLY SER ILE THR GLU GLN SEQRES 16 A 458 LEU LEU ASN ALA ARG ALA ASP VAL THR LEU GLY GLY GLY SEQRES 17 A 458 ALA LYS THR PHE ALA GLU THR ALA THR ALA GLY GLU TRP SEQRES 18 A 458 GLN GLY LYS THR LEU ARG GLU GLN ALA GLN ALA ARG GLY SEQRES 19 A 458 TYR GLN LEU VAL SER ASP ALA ALA SER LEU ASN SER VAL SEQRES 20 A 458 THR GLU ALA ASN GLN GLN LYS PRO LEU LEU GLY LEU PHE SEQRES 21 A 458 ALA ASP GLY ASN MET PRO VAL ARG TRP LEU GLY PRO LYS SEQRES 22 A 458 ALA THR TYR HIS GLY ASN ILE ASP LYS PRO ALA VAL THR SEQRES 23 A 458 CYS THR PRO ASN PRO GLN ARG ASN ASP SER VAL PRO THR SEQRES 24 A 458 LEU ALA GLN MET THR ASP LYS ALA ILE GLU LEU LEU SER SEQRES 25 A 458 LYS ASN GLU LYS GLY PHE PHE LEU GLN VAL GLU GLY ALA SEQRES 26 A 458 SER ILE ASP LYS GLN ASP HIS ALA ALA ASN PRO CYS GLY SEQRES 27 A 458 GLN ILE GLY GLU THR VAL ASP LEU ASP GLU ALA VAL GLN SEQRES 28 A 458 ARG ALA LEU GLU PHE ALA LYS LYS GLU GLY ASN THR LEU SEQRES 29 A 458 VAL ILE VAL THR ALA ASP HIS ALA HIS ALA SER GLN ILE SEQRES 30 A 458 VAL ALA PRO ASP THR LYS ALA PRO GLY LEU THR GLN ALA SEQRES 31 A 458 LEU ASN THR LYS ASP GLY ALA VAL MET VAL MET SER TYR SEQRES 32 A 458 GLY ASN SER GLU GLU ASP SER GLN GLU HIS THR GLY SER SEQRES 33 A 458 GLN LEU ARG ILE ALA ALA TYR GLY PRO HIS ALA ALA ASN SEQRES 34 A 458 VAL VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR THR SEQRES 35 A 458 MET LYS ALA ALA LEU GLY LEU LYS LEU GLU HIS HIS HIS SEQRES 36 A 458 HIS HIS HIS SEQRES 1 B 458 ARG THR PRO GLU MET PRO VAL LEU GLU ASN ARG ALA ALA SEQRES 2 B 458 GLN GLY ASP ILE THR ALA PRO GLY GLY ALA ARG ARG LEU SEQRES 3 B 458 THR GLY ASP GLN THR ALA ALA LEU ARG ASP SER LEU SER SEQRES 4 B 458 ASP LYS PRO ALA LYS ASN ILE ILE LEU LEU ILE GLY ASP SEQRES 5 B 458 GLY MET GLY ASP SER GLU ILE THR ALA ALA ARG ASN TYR SEQRES 6 B 458 ALA GLU GLY ALA GLY GLY PHE PHE LYS GLY ILE ASP ALA SEQRES 7 B 458 LEU PRO LEU THR GLY GLN TYR THR HIS TYR ALA LEU ASN SEQRES 8 B 458 LYS LYS THR GLY LYS PRO ASP TYR VAL THR ASP SER ALA SEQRES 9 B 458 ALA SER ALA THR ALA TRP SER THR GLY VAL LYS THR TYR SEQRES 10 B 458 ASN GLY ALA LEU GLY VAL ASP ILE HIS GLU LYS ASP HIS SEQRES 11 B 458 PRO THR ILE LEU GLU MET ALA LYS ALA ALA GLY LEU ALA SEQRES 12 B 458 THR GLY ASN VAL SER THR ALA GLU LEU GLN ASP ALA THR SEQRES 13 B 458 PRO ALA ALA LEU VAL ALA HIS VAL THR SER ARG LYS CYS SEQRES 14 B 458 TYR GLY PRO SER ALA THR SER GLU LYS CYS PRO GLY ASN SEQRES 15 B 458 ALA LEU GLU LYS GLY GLY LYS GLY SER ILE THR GLU GLN SEQRES 16 B 458 LEU LEU ASN ALA ARG ALA ASP VAL THR LEU GLY GLY GLY SEQRES 17 B 458 ALA LYS THR PHE ALA GLU THR ALA THR ALA GLY GLU TRP SEQRES 18 B 458 GLN GLY LYS THR LEU ARG GLU GLN ALA GLN ALA ARG GLY SEQRES 19 B 458 TYR GLN LEU VAL SER ASP ALA ALA SER LEU ASN SER VAL SEQRES 20 B 458 THR GLU ALA ASN GLN GLN LYS PRO LEU LEU GLY LEU PHE SEQRES 21 B 458 ALA ASP GLY ASN MET PRO VAL ARG TRP LEU GLY PRO LYS SEQRES 22 B 458 ALA THR TYR HIS GLY ASN ILE ASP LYS PRO ALA VAL THR SEQRES 23 B 458 CYS THR PRO ASN PRO GLN ARG ASN ASP SER VAL PRO THR SEQRES 24 B 458 LEU ALA GLN MET THR ASP LYS ALA ILE GLU LEU LEU SER SEQRES 25 B 458 LYS ASN GLU LYS GLY PHE PHE LEU GLN VAL GLU GLY ALA SEQRES 26 B 458 SER ILE ASP LYS GLN ASP HIS ALA ALA ASN PRO CYS GLY SEQRES 27 B 458 GLN ILE GLY GLU THR VAL ASP LEU ASP GLU ALA VAL GLN SEQRES 28 B 458 ARG ALA LEU GLU PHE ALA LYS LYS GLU GLY ASN THR LEU SEQRES 29 B 458 VAL ILE VAL THR ALA ASP HIS ALA HIS ALA SER GLN ILE SEQRES 30 B 458 VAL ALA PRO ASP THR LYS ALA PRO GLY LEU THR GLN ALA SEQRES 31 B 458 LEU ASN THR LYS ASP GLY ALA VAL MET VAL MET SER TYR SEQRES 32 B 458 GLY ASN SER GLU GLU ASP SER GLN GLU HIS THR GLY SER SEQRES 33 B 458 GLN LEU ARG ILE ALA ALA TYR GLY PRO HIS ALA ALA ASN SEQRES 34 B 458 VAL VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR THR SEQRES 35 B 458 MET LYS ALA ALA LEU GLY LEU LYS LEU GLU GLU GLU GLU SEQRES 36 B 458 GLU GLU GLU HET SO4 A 961 5 HET SO4 B 959 5 HET SO4 B 962 5 HET SO4 B 963 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *1257(H2 O) HELIX 1 1 GLN A 29 ASP A 35 1 7 HELIX 2 2 GLY A 54 GLY A 67 1 14 HELIX 3 3 GLY A 74 LEU A 78 5 5 HELIX 4 4 ASP A 101 GLY A 112 1 12 HELIX 5 5 THR A 131 ALA A 139 1 9 HELIX 6 6 ASP A 153 ALA A 158 1 6 HELIX 7 7 GLY A 170 CYS A 178 1 9 HELIX 8 8 PRO A 179 GLY A 186 5 8 HELIX 9 9 SER A 190 ARG A 199 1 10 HELIX 10 10 ALA A 208 GLU A 213 5 6 HELIX 11 11 THR A 224 ARG A 232 1 9 HELIX 12 12 ASP A 239 SER A 245 1 7 HELIX 13 13 HIS A 276 LYS A 281 1 6 HELIX 14 14 THR A 298 SER A 311 1 14 HELIX 15 15 ASN A 334 GLY A 360 1 27 HELIX 16 16 HIS A 425 VAL A 430 5 6 HELIX 17 17 GLN A 435 LEU A 446 1 12 HELIX 18 18 GLN B 29 SER B 36 1 8 HELIX 19 19 GLY B 54 GLY B 67 1 14 HELIX 20 20 GLY B 74 LEU B 78 5 5 HELIX 21 21 ASP B 101 GLY B 112 1 12 HELIX 22 22 THR B 131 ALA B 139 1 9 HELIX 23 23 ASP B 153 LEU B 159 1 7 HELIX 24 24 GLY B 170 CYS B 178 1 9 HELIX 25 25 PRO B 179 GLY B 186 5 8 HELIX 26 26 SER B 190 ARG B 199 1 10 HELIX 27 27 GLY B 207 GLU B 213 5 7 HELIX 28 28 THR B 224 ARG B 232 1 9 HELIX 29 29 ASP B 239 VAL B 246 1 8 HELIX 30 30 HIS B 276 LYS B 281 1 6 HELIX 31 31 THR B 298 SER B 311 1 14 HELIX 32 32 ASN B 334 GLY B 360 1 27 HELIX 33 33 HIS B 425 VAL B 430 5 6 HELIX 34 34 GLN B 435 GLY B 447 1 13 SHEET 1 A10 GLN A 235 VAL A 237 0 SHEET 2 A10 LEU A 255 LEU A 258 1 O LEU A 256 N GLN A 235 SHEET 3 A10 VAL A 202 GLY A 206 1 N THR A 203 O GLY A 257 SHEET 4 A10 ALA A 142 GLU A 150 1 N ALA A 149 O GLY A 206 SHEET 5 A10 PHE A 317 GLY A 323 1 O GLN A 320 N VAL A 146 SHEET 6 A10 ASN A 44 GLY A 50 1 N ILE A 49 O VAL A 321 SHEET 7 A10 THR A 362 ALA A 368 1 O ILE A 365 N LEU A 48 SHEET 8 A10 LEU A 417 TYR A 422 -1 O TYR A 422 N VAL A 364 SHEET 9 A10 LEU A 80 THR A 85 -1 N GLY A 82 O ILE A 419 SHEET 10 A10 GLY A 431 ASP A 434 1 O GLY A 431 N GLN A 83 SHEET 1 B 2 ALA A 88 LEU A 89 0 SHEET 2 B 2 PRO A 96 ASP A 97 -1 O ASP A 97 N ALA A 88 SHEET 1 C 2 TRP A 268 LEU A 269 0 SHEET 2 C 2 THR A 287 PRO A 288 -1 O THR A 287 N LEU A 269 SHEET 1 D 4 THR A 274 TYR A 275 0 SHEET 2 D 4 LEU A 386 ASN A 391 -1 O THR A 387 N THR A 274 SHEET 3 D 4 VAL A 397 TYR A 402 -1 O TYR A 402 N LEU A 386 SHEET 4 D 4 SER A 374 VAL A 377 -1 N GLN A 375 O SER A 401 SHEET 1 E10 GLN B 235 VAL B 237 0 SHEET 2 E10 LEU B 255 LEU B 258 1 O LEU B 256 N GLN B 235 SHEET 3 E10 VAL B 202 GLY B 206 1 N THR B 203 O GLY B 257 SHEET 4 E10 ALA B 142 GLU B 150 1 N SER B 147 O LEU B 204 SHEET 5 E10 PHE B 317 GLY B 323 1 O GLN B 320 N VAL B 146 SHEET 6 E10 ASN B 44 GLY B 50 1 N ILE B 49 O VAL B 321 SHEET 7 E10 THR B 362 THR B 367 1 O ILE B 365 N LEU B 48 SHEET 8 E10 LEU B 417 TYR B 422 -1 O ALA B 420 N VAL B 366 SHEET 9 E10 LEU B 80 THR B 85 -1 N GLY B 82 O ILE B 419 SHEET 10 E10 GLY B 431 ASP B 434 1 O GLY B 431 N GLN B 83 SHEET 1 F 2 ALA B 88 LEU B 89 0 SHEET 2 F 2 PRO B 96 ASP B 97 -1 O ASP B 97 N ALA B 88 SHEET 1 G 2 TRP B 268 LEU B 269 0 SHEET 2 G 2 THR B 287 PRO B 288 -1 O THR B 287 N LEU B 269 SHEET 1 H 3 GLN B 375 VAL B 377 0 SHEET 2 H 3 VAL B 397 TYR B 402 -1 O SER B 401 N GLN B 375 SHEET 3 H 3 LEU B 386 ASN B 391 -1 N LEU B 386 O TYR B 402 SSBOND 1 CYS A 168 CYS A 178 1555 1555 2.05 SSBOND 2 CYS A 286 CYS A 336 1555 1555 2.04 SSBOND 3 CYS B 168 CYS B 178 1555 1555 2.06 SSBOND 4 CYS B 286 CYS B 336 1555 1555 2.05 SITE 1 AC1 7 ASP B 101 SER B 102 ARG B 166 HIS B 370 SITE 2 AC1 7 HIS B 412 HOH B1210 HOH B1552 SITE 1 AC2 8 ASP A 101 SER A 102 ARG A 166 HIS A 370 SITE 2 AC2 8 HIS A 412 HOH A1152 HOH A1376 HOH A1413 SITE 1 AC3 6 ARG A 34 SER B 38 ASP B 39 LYS B 40 SITE 2 AC3 6 HOH B1211 HOH B1240 SITE 1 AC4 4 TYR B 275 HIS B 276 ASP B 280 HOH B1157 CRYST1 55.320 103.350 88.286 90.00 105.78 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018077 0.000000 0.005108 0.00000 SCALE2 0.000000 0.009676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011770 0.00000