HEADER IMMUNE SYSTEM 15-NOV-07 3BDX TITLE CRYSTAL STRUCTURE OF THE UNSTABLE AND HIGHLY FIBRILLOGENIC PRO7SER TITLE 2 MUTANT OF THE RECOMBINANT VARIABLE DOMAIN 6AJL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID LAMBDA 6 LIGHT CHAIN VARIABLE REGION PIP COMPND 3 (FRAGMENT); COMPND 4 CHAIN: A, B, C; COMPND 5 FRAGMENT: RESIDUES 1-111; COMPND 6 SYNONYM: RECOMBINANT LIGHT CHAIN VARIABLE DOMAIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: LAMBDA VI LIGHT CHAIN SUBGROUP; SOURCE 6 GENE: VL GENE SEGMENT 6A AND JL2/3 GENE SEGMENT; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: W3110; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSYN1 KEYWDS LAMBDA VI SUBGROUP, LIGHT CHAIN VARIABLE DOMAIN, BETA-SANDWICH, KEYWDS 2 IMMUNOGLOBULIN, AL AMYLOIDOSIS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.HERNANDEZ-SANTOYO,D.FUENTES-SILVA,L.DEL POZO YAUNER,B.BECERRIL, AUTHOR 2 A.RODRIGUEZ-ROMERO REVDAT 6 30-AUG-23 3BDX 1 REMARK REVDAT 5 20-OCT-21 3BDX 1 REMARK SEQADV REVDAT 4 13-JUL-11 3BDX 1 VERSN REVDAT 3 21-APR-10 3BDX 1 JRNL REVDAT 2 24-FEB-09 3BDX 1 VERSN REVDAT 1 28-OCT-08 3BDX 0 JRNL AUTH A.HERNANDEZ-SANTOYO,L.DEL POZO YAUNER,D.FUENTES-SILVA, JRNL AUTH 2 E.ORTIZ,E.RUDINO-PINERA,R.SANCHEZ-LOPEZ,E.HORJALES, JRNL AUTH 3 B.BECERRIL,A.RODRIGUEZ-ROMERO JRNL TITL A SINGLE MUTATION AT THE SHEET SWITCH REGION RESULTS IN JRNL TITL 2 CONFORMATIONAL CHANGES FAVORING LAMBDA6 LIGHT-CHAIN JRNL TITL 3 FIBRILLOGENESIS. JRNL REF J.MOL.BIOL. V. 396 280 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19941869 JRNL DOI 10.1016/J.JMB.2009.11.038 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2014859.880 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 16809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1717 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2548 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 11.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 317 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2517 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : 2.25000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.110 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.820 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.610 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.210 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 30.45 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ACT_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 3 : GOL_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 4 : MES_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ACT_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 3 : GOL_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 4 : MES_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 5 : WATER.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 103.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.22700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3B5G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS CONSISTED OF 5 MICROLITERS OF REMARK 280 PROTEIN SOLUTION (7 MG/ML) PLUS 5 MICROLITERS OF 0.1 M MES PH REMARK 280 6.5, 2.0 M SODIUM ACETATE TRIHYDRATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.68000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.68000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.05500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.06000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.05500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.06000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.68000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.05500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.06000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.68000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.05500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.06000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 300 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 299 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 139.61 -35.95 REMARK 500 ASP A 52 -49.23 62.44 REMARK 500 ASN A 53 12.06 -142.50 REMARK 500 LEU A 81 130.56 -30.27 REMARK 500 SER B 9 147.06 -36.02 REMARK 500 ASP B 52 -44.79 73.06 REMARK 500 ASN B 53 12.16 -147.61 REMARK 500 LEU B 81 140.67 -38.68 REMARK 500 GLU B 84 4.47 -69.75 REMARK 500 ALA B 87 -178.24 175.92 REMARK 500 ASP C 52 -38.80 71.61 REMARK 500 ASN C 53 21.25 -162.82 REMARK 500 ASP C 61 3.04 -57.75 REMARK 500 ALA C 87 -174.33 174.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 504 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUES ARE NUMBERED CONSECUTIVELY IN THE REMARK 999 POLYPEPTIDE CHAIN AND DO NOT FOLLOW THE KABAT REMARK 999 NUMBERING SCHEME. DBREF 3BDX A 1 111 UNP Q96JD1 Q96JD1_HUMAN 1 111 DBREF 3BDX B 1 111 UNP Q96JD1 Q96JD1_HUMAN 1 111 DBREF 3BDX C 1 111 UNP Q96JD1 Q96JD1_HUMAN 1 111 SEQADV 3BDX SER A 7 UNP Q96JD1 PRO 7 ENGINEERED MUTATION SEQADV 3BDX VAL A 18 UNP Q96JD1 ILE 18 CONFLICT SEQADV 3BDX SER A 44 UNP Q96JD1 ALA 44 CONFLICT SEQADV 3BDX SER A 97 UNP Q96JD1 ASN 97 CONFLICT SEQADV 3BDX HIS A 99 UNP Q96JD1 TYR 99 CONFLICT SEQADV 3BDX VAL A 100 UNP Q96JD1 ALA 100 CONFLICT SEQADV 3BDX VAL A 101 UNP Q96JD1 LEU 101 CONFLICT SEQADV 3BDX LYS A 107 UNP Q96JD1 GLN 107 CONFLICT SEQADV 3BDX SER B 7 UNP Q96JD1 PRO 7 ENGINEERED MUTATION SEQADV 3BDX VAL B 18 UNP Q96JD1 ILE 18 CONFLICT SEQADV 3BDX SER B 44 UNP Q96JD1 ALA 44 CONFLICT SEQADV 3BDX SER B 97 UNP Q96JD1 ASN 97 CONFLICT SEQADV 3BDX HIS B 99 UNP Q96JD1 TYR 99 CONFLICT SEQADV 3BDX VAL B 100 UNP Q96JD1 ALA 100 CONFLICT SEQADV 3BDX VAL B 101 UNP Q96JD1 LEU 101 CONFLICT SEQADV 3BDX LYS B 107 UNP Q96JD1 GLN 107 CONFLICT SEQADV 3BDX SER C 7 UNP Q96JD1 PRO 7 ENGINEERED MUTATION SEQADV 3BDX VAL C 18 UNP Q96JD1 ILE 18 CONFLICT SEQADV 3BDX SER C 44 UNP Q96JD1 ALA 44 CONFLICT SEQADV 3BDX SER C 97 UNP Q96JD1 ASN 97 CONFLICT SEQADV 3BDX HIS C 99 UNP Q96JD1 TYR 99 CONFLICT SEQADV 3BDX VAL C 100 UNP Q96JD1 ALA 100 CONFLICT SEQADV 3BDX VAL C 101 UNP Q96JD1 LEU 101 CONFLICT SEQADV 3BDX LYS C 107 UNP Q96JD1 GLN 107 CONFLICT SEQRES 1 A 111 ASN PHE MET LEU THR GLN SER HIS SER VAL SER GLU SER SEQRES 2 A 111 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 A 111 GLY SER ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 A 111 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 A 111 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 A 111 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 A 111 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 A 111 GLN SER TYR ASP SER SER ASN HIS VAL VAL PHE GLY GLY SEQRES 9 A 111 GLY THR LYS LEU THR VAL LEU SEQRES 1 B 111 ASN PHE MET LEU THR GLN SER HIS SER VAL SER GLU SER SEQRES 2 B 111 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 B 111 GLY SER ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 B 111 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 B 111 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 B 111 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 B 111 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 B 111 GLN SER TYR ASP SER SER ASN HIS VAL VAL PHE GLY GLY SEQRES 9 B 111 GLY THR LYS LEU THR VAL LEU SEQRES 1 C 111 ASN PHE MET LEU THR GLN SER HIS SER VAL SER GLU SER SEQRES 2 C 111 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 C 111 GLY SER ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 C 111 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 C 111 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 C 111 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 C 111 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 C 111 GLN SER TYR ASP SER SER ASN HIS VAL VAL PHE GLY GLY SEQRES 9 C 111 GLY THR LYS LEU THR VAL LEU HET ACT A 401 4 HET ACT A 402 4 HET ACT A 404 4 HET GOL A 501 6 HET GOL A 503 6 HET ACT B 403 4 HET GOL B 504 6 HET MES B 601 12 HET ACT C 405 4 HET GOL C 502 6 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ACT 5(C2 H3 O2 1-) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 11 MES C6 H13 N O4 S FORMUL 14 HOH *100(H2 O) HELIX 1 1 SER A 28 ASN A 32 5 5 HELIX 2 2 LYS A 82 GLU A 86 5 5 HELIX 3 3 LYS B 82 GLU B 86 5 5 HELIX 4 4 LYS C 82 GLU C 86 5 5 SHEET 1 A 4 LEU A 4 GLN A 6 0 SHEET 2 A 4 THR A 17 ARG A 24 -1 O THR A 23 N THR A 5 SHEET 3 A 4 SER A 73 SER A 79 -1 O LEU A 76 N ILE A 20 SHEET 4 A 4 PHE A 63 ASP A 68 -1 N SER A 66 O SER A 75 SHEET 1 B 5 VAL A 10 GLU A 12 0 SHEET 2 B 5 THR A 106 VAL A 110 1 O LYS A 107 N VAL A 10 SHEET 3 B 5 ALA A 87 TYR A 94 -1 N ALA A 87 O LEU A 108 SHEET 4 B 5 GLN A 35 GLN A 39 -1 N GLN A 35 O GLN A 92 SHEET 5 B 5 THR A 46 ILE A 49 -1 O ILE A 49 N TRP A 36 SHEET 1 C 4 VAL A 10 GLU A 12 0 SHEET 2 C 4 THR A 106 VAL A 110 1 O LYS A 107 N VAL A 10 SHEET 3 C 4 ALA A 87 TYR A 94 -1 N ALA A 87 O LEU A 108 SHEET 4 C 4 VAL A 100 PHE A 102 -1 O VAL A 101 N SER A 93 SHEET 1 D 4 LEU B 4 GLN B 6 0 SHEET 2 D 4 VAL B 18 ARG B 24 -1 O THR B 23 N THR B 5 SHEET 3 D 4 SER B 73 ILE B 78 -1 O LEU B 76 N ILE B 20 SHEET 4 D 4 PHE B 63 ILE B 67 -1 N SER B 66 O SER B 75 SHEET 1 E 5 VAL B 10 GLU B 12 0 SHEET 2 E 5 THR B 106 VAL B 110 1 O LYS B 107 N VAL B 10 SHEET 3 E 5 ALA B 87 TYR B 94 -1 N TYR B 89 O THR B 106 SHEET 4 E 5 GLN B 35 GLN B 39 -1 N TYR B 37 O TYR B 90 SHEET 5 E 5 THR B 46 ILE B 49 -1 O THR B 46 N GLN B 38 SHEET 1 F 4 VAL B 10 GLU B 12 0 SHEET 2 F 4 THR B 106 VAL B 110 1 O LYS B 107 N VAL B 10 SHEET 3 F 4 ALA B 87 TYR B 94 -1 N TYR B 89 O THR B 106 SHEET 4 F 4 VAL B 100 PHE B 102 -1 O VAL B 101 N SER B 93 SHEET 1 G 4 LEU C 4 GLN C 6 0 SHEET 2 G 4 VAL C 18 ARG C 24 -1 O THR C 23 N THR C 5 SHEET 3 G 4 SER C 73 ILE C 78 -1 O ILE C 78 N VAL C 18 SHEET 4 G 4 PHE C 63 ASP C 68 -1 N ASP C 68 O SER C 73 SHEET 1 H 5 SER C 9 GLU C 12 0 SHEET 2 H 5 THR C 106 VAL C 110 1 O THR C 109 N VAL C 10 SHEET 3 H 5 ALA C 87 TYR C 94 -1 N ALA C 87 O LEU C 108 SHEET 4 H 5 GLN C 35 GLN C 39 -1 N GLN C 35 O GLN C 92 SHEET 5 H 5 THR C 46 ILE C 49 -1 O ILE C 49 N TRP C 36 SHEET 1 I 4 SER C 9 GLU C 12 0 SHEET 2 I 4 THR C 106 VAL C 110 1 O THR C 109 N VAL C 10 SHEET 3 I 4 ALA C 87 TYR C 94 -1 N ALA C 87 O LEU C 108 SHEET 4 I 4 VAL C 100 PHE C 102 -1 O VAL C 101 N SER C 93 SSBOND 1 CYS A 22 CYS A 91 1555 1555 2.03 SSBOND 2 CYS B 22 CYS B 91 1555 1555 2.03 SSBOND 3 CYS C 22 CYS C 91 1555 1555 2.03 SITE 1 AC1 4 VAL A 101 PHE A 102 PRO B 45 THR B 47 SITE 1 AC2 5 PRO A 45 THR A 46 THR A 47 HOH A 224 SITE 2 AC2 5 PHE B 102 SITE 1 AC3 4 ASN A 98 TYR B 33 GLN B 35 TYR B 94 SITE 1 AC4 4 HIS A 99 TYR B 50 ARG C 55 SER C 57 SITE 1 AC5 3 SER C 66 ASP C 68 SER C 75 SITE 1 AC6 6 ASN A 98 ASN B 32 TYR B 33 TYR B 94 SITE 2 AC6 6 ASN B 98 HOH B 288 SITE 1 AC7 2 ALA A 30 SER A 31 SITE 1 AC8 5 GLN C 38 PRO C 60 ARG C 62 GLU C 84 SITE 2 AC8 5 ASP C 85 SITE 1 AC9 6 SER A 9 TYR A 90 GLY A 104 GLY A 105 SITE 2 AC9 6 LYS A 107 GLY B 42 SITE 1 BC1 2 ALA B 30 SER C 69 CRYST1 56.110 106.120 133.360 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017823 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007499 0.00000