HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-NOV-07 3BEE TITLE CRYSTAL STRUCTURE OF PUTATIVE YFRE PROTEIN FROM VIBRIO TITLE 2 PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE YFRE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 146-235; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS RIMD 2210633; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633 / SEROTYPE O3:K6; SOURCE 5 GENE: VP1931; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PUTAIVE YFRE PROTEIN, VIBRIO PARAHAEMOLYTICUS, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TPR REPEAT, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,C.HATZOS,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 3BEE 1 VERSN REVDAT 2 24-FEB-09 3BEE 1 VERSN REVDAT 1 04-DEC-07 3BEE 0 JRNL AUTH C.CHANG,C.HATZOS,J.ABDULLAH,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE YFRE PROTEIN FROM VIBRIO JRNL TITL 2 PARAHAEMOLYTICUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 726 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 985 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 39.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.786 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1498 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2031 ; 1.256 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 185 ; 4.589 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;39.529 ;26.119 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 269 ;12.874 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 6.879 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 248 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1086 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 724 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1061 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 77 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.257 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.282 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 970 ; 0.860 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1494 ; 1.249 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 614 ; 2.514 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 536 ; 3.429 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4415 41.7123 25.0253 REMARK 3 T TENSOR REMARK 3 T11: -0.0305 T22: -0.0941 REMARK 3 T33: -0.0843 T12: -0.0853 REMARK 3 T13: -0.0228 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 4.3436 L22: 10.7714 REMARK 3 L33: 4.6088 L12: -2.0700 REMARK 3 L13: -0.3590 L23: 3.6696 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.2091 S13: 0.2037 REMARK 3 S21: -0.2629 S22: -0.3630 S23: -0.0273 REMARK 3 S31: -0.3452 S32: 0.2851 S33: 0.3679 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8432 30.2731 27.2527 REMARK 3 T TENSOR REMARK 3 T11: -0.0957 T22: -0.0875 REMARK 3 T33: -0.0783 T12: -0.0370 REMARK 3 T13: 0.0281 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 6.3284 L22: 6.4069 REMARK 3 L33: 3.8446 L12: 1.1827 REMARK 3 L13: 0.0157 L23: 1.3246 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.1628 S13: 0.4638 REMARK 3 S21: 0.0242 S22: -0.2209 S23: 0.5075 REMARK 3 S31: -0.0817 S32: -0.1401 S33: 0.2584 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 145 B 180 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9125 25.6789 8.6960 REMARK 3 T TENSOR REMARK 3 T11: -0.0087 T22: -0.1289 REMARK 3 T33: -0.1700 T12: 0.0055 REMARK 3 T13: 0.0273 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 11.2478 L22: 8.6956 REMARK 3 L33: 5.7662 L12: -5.0760 REMARK 3 L13: -0.9073 L23: 0.3039 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.0647 S13: 0.3363 REMARK 3 S21: -0.1922 S22: 0.0177 S23: -0.0048 REMARK 3 S31: -0.0173 S32: 0.3440 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 181 B 235 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4101 12.9811 19.6081 REMARK 3 T TENSOR REMARK 3 T11: 0.0848 T22: -0.1698 REMARK 3 T33: -0.1578 T12: 0.0823 REMARK 3 T13: 0.0281 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 6.2788 L22: 3.5559 REMARK 3 L33: 2.4488 L12: -1.0633 REMARK 3 L13: -1.4030 L23: -0.6648 REMARK 3 S TENSOR REMARK 3 S11: -0.1876 S12: -0.1895 S13: -0.4069 REMARK 3 S21: 0.1663 S22: 0.0248 S23: 0.1179 REMARK 3 S31: 0.2758 S32: 0.1389 S33: 0.1629 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-07. REMARK 100 THE RCSB ID CODE IS RCSB045415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.600 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 55.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE, 0.1 M BICINE, REMARK 280 PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.17100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.19150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.19150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.75650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.19150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.19150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.58550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.19150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.19150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.75650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.19150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.19150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.58550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.17100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 143 REMARK 465 SER B 143 REMARK 465 ASN B 144 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 144 CG OD1 REMARK 470 VAL B 146 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 215 NZ LYS B 163 4455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC91400.1 RELATED DB: TARGETDB DBREF 3BEE A 146 235 UNP Q87ND7 Q87ND7_VIBPA 146 235 DBREF 3BEE B 146 235 UNP Q87ND7 Q87ND7_VIBPA 146 235 SEQADV 3BEE SER A 143 UNP Q87ND7 EXPRESSION TAG SEQADV 3BEE ASN A 144 UNP Q87ND7 EXPRESSION TAG SEQADV 3BEE ALA A 145 UNP Q87ND7 EXPRESSION TAG SEQADV 3BEE SER B 143 UNP Q87ND7 EXPRESSION TAG SEQADV 3BEE ASN B 144 UNP Q87ND7 EXPRESSION TAG SEQADV 3BEE ALA B 145 UNP Q87ND7 EXPRESSION TAG SEQRES 1 A 93 SER ASN ALA VAL THR ALA THR GLN LEU ALA ALA LYS ALA SEQRES 2 A 93 THR THR LEU TYR TYR LEU HIS LYS GLN ALA MSE THR ASP SEQRES 3 A 93 GLU VAL SER LEU LEU LEU GLU GLN ALA LEU GLN LEU GLU SEQRES 4 A 93 PRO TYR ASN GLU ALA ALA LEU SER LEU ILE ALA ASN ASP SEQRES 5 A 93 HIS PHE ILE SER PHE ARG PHE GLN GLU ALA ILE ASP THR SEQRES 6 A 93 TRP VAL LEU LEU LEU ASP SER ASN ASP PRO ASN LEU ASP SEQRES 7 A 93 ARG VAL THR ILE ILE GLU SER ILE ASN LYS ALA LYS LYS SEQRES 8 A 93 LEU MSE SEQRES 1 B 93 SER ASN ALA VAL THR ALA THR GLN LEU ALA ALA LYS ALA SEQRES 2 B 93 THR THR LEU TYR TYR LEU HIS LYS GLN ALA MSE THR ASP SEQRES 3 B 93 GLU VAL SER LEU LEU LEU GLU GLN ALA LEU GLN LEU GLU SEQRES 4 B 93 PRO TYR ASN GLU ALA ALA LEU SER LEU ILE ALA ASN ASP SEQRES 5 B 93 HIS PHE ILE SER PHE ARG PHE GLN GLU ALA ILE ASP THR SEQRES 6 B 93 TRP VAL LEU LEU LEU ASP SER ASN ASP PRO ASN LEU ASP SEQRES 7 B 93 ARG VAL THR ILE ILE GLU SER ILE ASN LYS ALA LYS LYS SEQRES 8 B 93 LEU MSE MODRES 3BEE MSE A 166 MET SELENOMETHIONINE MODRES 3BEE MSE A 235 MET SELENOMETHIONINE MODRES 3BEE MSE B 166 MET SELENOMETHIONINE MODRES 3BEE MSE B 235 MET SELENOMETHIONINE HET MSE A 166 8 HET MSE A 235 8 HET MSE B 166 8 HET MSE B 235 8 HET EDO A 301 4 HET EDO A 302 4 HET EDO B 303 4 HET EDO A 304 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *103(H2 O) HELIX 1 1 THR A 147 LEU A 161 1 15 HELIX 2 2 THR A 167 GLU A 181 1 15 HELIX 3 3 ASN A 184 SER A 198 1 15 HELIX 4 4 ARG A 200 ASP A 213 1 14 HELIX 5 5 ASP A 220 MSE A 235 1 16 HELIX 6 6 THR B 147 HIS B 162 1 16 HELIX 7 7 THR B 167 GLU B 181 1 15 HELIX 8 8 ASN B 184 SER B 198 1 15 HELIX 9 9 ARG B 200 LEU B 212 1 13 HELIX 10 10 ASP B 220 MSE B 235 1 16 LINK C ALA A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N THR A 167 1555 1555 1.33 LINK C LEU A 234 N MSE A 235 1555 1555 1.33 LINK C ALA B 165 N MSE B 166 1555 1555 1.33 LINK C MSE B 166 N THR B 167 1555 1555 1.33 LINK C LEU B 234 N MSE B 235 1555 1555 1.34 SITE 1 AC1 4 THR A 167 ASP A 168 GLU A 169 LYS B 232 SITE 1 AC2 4 ASN A 193 TRP A 208 SER A 227 GLN B 164 SITE 1 AC3 4 HOH A 101 TYR A 160 LEU A 212 ASP A 213 SITE 1 AC4 7 HOH A 90 ASP A 168 GLU A 169 LEU A 172 SITE 2 AC4 7 ILE B 225 ASN B 229 LYS B 232 CRYST1 82.383 82.383 74.342 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012138 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012138 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013451 0.00000