HEADER TRANSFERASE/SPLICING 18-NOV-07 3BEG TITLE CRYSTAL STRUCTURE OF SR PROTEIN KINASE 1 COMPLEXED TO ITS SUBSTRATE TITLE 2 ASF/SF2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE SRPK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN OF SRPK1; UNP RESIDUES 229-426, 645-826; COMPND 5 SYNONYM: SERINE/ARGININE-RICH PROTEIN-SPECIFIC KINASE 1, SR-PROTEIN- COMPND 6 SPECIFIC KINASE 1, SFRS PROTEIN KINASE 1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SPLICING FACTOR, ARGININE/SERINE-RICH 1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 105-219; COMPND 13 SYNONYM: PRE-MRNA-SPLICING FACTOR SF2, P33 SUBUNIT, ALTERNATIVE- COMPND 14 SPLICING FACTOR 1, ASF-1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SRPK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: SFRS1, ASF, SF2, SF2P33; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PRSET KEYWDS KINASE, SR PROTEIN KINASE, SR PROTEIN, PRE-MRNA SPLICING, ATP- KEYWDS 2 BINDING, CHROMOSOME PARTITION, DIFFERENTIATION, MRNA PROCESSING, KEYWDS 3 NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, SERINE/THREONINE- KEYWDS 4 PROTEIN KINASE, TRANSFERASE, METHYLATION, RNA-BINDING, SPLICEOSOME, KEYWDS 5 TRANSFERASE-SPLICING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NGO,K.GIANG,S.CHAKRABARTI,C.-T.MA,N.HUYNH,J.HAGOPIAN, AUTHOR 2 P.C.DORRESTEIN,X.-D.FU,J.A.ADAMS,G.GHOSH REVDAT 8 21-FEB-24 3BEG 1 REMARK SEQADV LINK REVDAT 7 25-OCT-17 3BEG 1 REMARK REVDAT 6 23-AUG-17 3BEG 1 SOURCE REMARK REVDAT 5 10-SEP-14 3BEG 1 JRNL REVDAT 4 13-JUL-11 3BEG 1 VERSN REVDAT 3 24-FEB-09 3BEG 1 VERSN REVDAT 2 08-APR-08 3BEG 1 AUTHOR REVDAT 1 01-APR-08 3BEG 0 JRNL AUTH J.C.NGO,K.GIANG,S.CHAKRABARTI,C.-T.MA,N.HUYNH,J.HAGOPIAN, JRNL AUTH 2 P.C.DORRESTEIN,X.-D.FU,J.A.ADAMS,G.GHOSH JRNL TITL A SLIDING DOCKING INTERACTION IS ESSENTIAL FOR SEQUENTIAL JRNL TITL 2 AND PROCESSIVE PHOSPHORYLATION OF AN SR PROTEIN BY SRPK1 JRNL REF MOL.CELL V. 29 563 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18342604 JRNL DOI 10.1016/J.MOLCEL.2007.12.017 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 13153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 707 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.4150 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.4570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.41000 REMARK 3 B22 (A**2) : -3.21000 REMARK 3 B33 (A**2) : 9.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.462 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.351 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.222 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3524 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4790 ; 1.493 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 6.887 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;37.618 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 579 ;22.165 ;15.026 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.493 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2634 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1701 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2376 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 104 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.235 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2209 ; 0.405 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3465 ; 0.752 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1505 ; 0.998 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1325 ; 1.696 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 235 REMARK 3 RESIDUE RANGE : A 475 A 655 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6990 19.3520 67.0490 REMARK 3 T TENSOR REMARK 3 T11: -0.5405 T22: -0.2792 REMARK 3 T33: 0.1513 T12: -0.2138 REMARK 3 T13: -0.1509 T23: 0.0992 REMARK 3 L TENSOR REMARK 3 L11: 2.9965 L22: 4.7521 REMARK 3 L33: 3.9376 L12: -0.1199 REMARK 3 L13: 0.2915 L23: -2.2512 REMARK 3 S TENSOR REMARK 3 S11: 0.1496 S12: -0.1388 S13: 0.4192 REMARK 3 S21: 0.6916 S22: -0.5407 S23: -0.6615 REMARK 3 S31: -0.1928 S32: 0.2348 S33: 0.3911 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 121 B 196 REMARK 3 RESIDUE RANGE : B 201 B 210 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6030 14.0060 63.5140 REMARK 3 T TENSOR REMARK 3 T11: -0.5933 T22: -0.1136 REMARK 3 T33: 0.3906 T12: -0.0067 REMARK 3 T13: -0.0655 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 3.0508 L22: 7.8326 REMARK 3 L33: 3.9088 L12: 3.5088 REMARK 3 L13: -3.2072 L23: -4.9344 REMARK 3 S TENSOR REMARK 3 S11: 0.2912 S12: 0.1356 S13: 0.4501 REMARK 3 S21: 0.1370 S22: 0.2166 S23: 1.0542 REMARK 3 S31: -0.2179 S32: -0.2049 S33: -0.5077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13862 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 0.2M SODIUM REMARK 280 ACETATE, 5% ETHANOL, 15% PEGMME 5000, PH 5.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.70300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.76250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.77700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.70300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.76250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.77700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.70300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.76250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.77700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.70300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.76250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 96.77700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 58 REMARK 465 PRO A 59 REMARK 465 ASN A 60 REMARK 465 ASP A 61 REMARK 465 TYR A 62 REMARK 465 CYS A 63 REMARK 465 LYS A 64 REMARK 465 GLY A 65 REMARK 465 GLY A 66 REMARK 465 TYR A 67 REMARK 465 HIS A 68 REMARK 465 THR A 236 REMARK 465 GLU A 237 REMARK 465 TRP A 238 REMARK 465 GLN A 239 REMARK 465 ARG A 240 REMARK 465 SER A 241 REMARK 465 GLY A 242 REMARK 465 ALA A 243 REMARK 465 PRO A 244 REMARK 465 PRO A 245 REMARK 465 PRO A 246 REMARK 465 SER A 247 REMARK 465 GLY A 248 REMARK 465 SER A 249 REMARK 465 ALA A 250 REMARK 465 VAL A 251 REMARK 465 SER A 252 REMARK 465 THR A 253 REMARK 465 ALA A 254 REMARK 465 PRO A 255 REMARK 465 ALA A 473 REMARK 465 THR A 474 REMARK 465 GLY B 105 REMARK 465 GLY B 106 REMARK 465 ALA B 107 REMARK 465 PRO B 108 REMARK 465 ARG B 109 REMARK 465 GLY B 110 REMARK 465 ARG B 111 REMARK 465 TYR B 112 REMARK 465 GLY B 113 REMARK 465 PRO B 114 REMARK 465 PRO B 115 REMARK 465 SER B 116 REMARK 465 ARG B 117 REMARK 465 ARG B 118 REMARK 465 SER B 119 REMARK 465 GLU B 120 REMARK 465 PRO B 197 REMARK 465 ARG B 198 REMARK 465 SER B 199 REMARK 465 PRO B 200 REMARK 465 SER B 211 REMARK 465 ARG B 212 REMARK 465 SER B 213 REMARK 465 ARG B 214 REMARK 465 SER B 215 REMARK 465 ARG B 216 REMARK 465 SER B 217 REMARK 465 ARG B 218 REMARK 465 SER B 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 98 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 98 CZ3 CH2 REMARK 470 GLN A 101 CG CD OE1 NE2 REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 PHE A 478 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 486 CG CD CE NZ REMARK 470 GLU A 557 CG CD OE1 OE2 REMARK 470 LYS A 575 CG CD CE NZ REMARK 470 ARG A 578 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 579 CG CD CE NZ REMARK 470 LYS A 585 CG CD CE NZ REMARK 470 LYS A 602 CG CD CE NZ REMARK 470 ASN B 121 CG OD1 ND2 REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 ARG B 164 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 165 CG CD CE NZ REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 ARG B 208 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 75 64.29 -118.21 REMARK 500 ARG A 79 -36.35 -140.61 REMARK 500 ARG A 84 149.67 -172.40 REMARK 500 GLN A 101 4.08 -69.53 REMARK 500 LYS A 103 -117.64 -139.05 REMARK 500 LYS A 104 -98.93 -62.83 REMARK 500 ASN A 133 85.08 -154.24 REMARK 500 ASP A 135 89.92 168.35 REMARK 500 VAL A 156 -89.34 -84.50 REMARK 500 CYS A 207 21.95 -148.40 REMARK 500 ARG A 208 41.79 39.61 REMARK 500 THR A 212 -11.76 72.24 REMARK 500 PHE A 478 71.77 -52.08 REMARK 500 LYS A 486 42.55 -81.07 REMARK 500 ASN A 487 -3.48 -140.68 REMARK 500 ALA A 496 -153.39 -114.77 REMARK 500 ASP A 497 76.85 33.98 REMARK 500 GLN A 513 140.92 69.15 REMARK 500 GLN A 516 1.46 -60.83 REMARK 500 ASN A 529 -178.81 177.56 REMARK 500 TYR A 559 -137.26 -134.03 REMARK 500 VAL A 582 5.55 -61.95 REMARK 500 THR A 592 -156.81 -120.42 REMARK 500 LYS A 594 -179.70 -67.90 REMARK 500 LYS A 602 70.34 33.52 REMARK 500 PHE A 629 -49.77 -161.27 REMARK 500 ARG A 641 127.68 -39.91 REMARK 500 ALA A 642 128.69 -28.87 REMARK 500 ARG B 122 47.98 -106.00 REMARK 500 LEU B 128 81.11 52.52 REMARK 500 SER B 131 32.83 163.81 REMARK 500 GLN B 135 -50.55 104.57 REMARK 500 ASP B 146 115.53 -27.66 REMARK 500 VAL B 172 -70.20 -55.62 REMARK 500 HIS B 183 57.62 -61.04 REMARK 500 GLU B 186 -154.43 -174.19 REMARK 500 SER B 205 -166.66 -77.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 183 GLU B 184 146.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 DIPEPTIDE WITH SEQUENCE SEP-ALA REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ALA A 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SEP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 656 DBREF 3BEG A 58 255 UNP Q96SB4 SRPK1_HUMAN 229 426 DBREF 3BEG A 474 655 UNP Q96SB4 SRPK1_HUMAN 645 826 DBREF 3BEG B 105 219 UNP Q07955 SFRS1_HUMAN 105 219 SEQADV 3BEG ALA A 473 LINKER SEQRES 1 A 381 ASP PRO ASN ASP TYR CYS LYS GLY GLY TYR HIS LEU VAL SEQRES 2 A 381 LYS ILE GLY ASP LEU PHE ASN GLY ARG TYR HIS VAL ILE SEQRES 3 A 381 ARG LYS LEU GLY TRP GLY HIS PHE SER THR VAL TRP LEU SEQRES 4 A 381 SER TRP ASP ILE GLN GLY LYS LYS PHE VAL ALA MET LYS SEQRES 5 A 381 VAL VAL LYS SER ALA GLU HIS TYR THR GLU THR ALA LEU SEQRES 6 A 381 ASP GLU ILE ARG LEU LEU LYS SER VAL ARG ASN SER ASP SEQRES 7 A 381 PRO ASN ASP PRO ASN ARG GLU MET VAL VAL GLN LEU LEU SEQRES 8 A 381 ASP ASP PHE LYS ILE SER GLY VAL ASN GLY THR HIS ILE SEQRES 9 A 381 CYS MET VAL PHE GLU VAL LEU GLY HIS HIS LEU LEU LYS SEQRES 10 A 381 TRP ILE ILE LYS SER ASN TYR GLN GLY LEU PRO LEU PRO SEQRES 11 A 381 CYS VAL LYS LYS ILE ILE GLN GLN VAL LEU GLN GLY LEU SEQRES 12 A 381 ASP TYR LEU HIS THR LYS CYS ARG ILE ILE HIS THR ASP SEQRES 13 A 381 ILE LYS PRO GLU ASN ILE LEU LEU SER VAL ASN GLU GLN SEQRES 14 A 381 TYR ILE ARG ARG LEU ALA ALA GLU ALA THR GLU TRP GLN SEQRES 15 A 381 ARG SER GLY ALA PRO PRO PRO SER GLY SER ALA VAL SER SEQRES 16 A 381 THR ALA PRO ALA THR ALA GLY ASN PHE LEU VAL ASN PRO SEQRES 17 A 381 LEU GLU PRO LYS ASN ALA GLU LYS LEU LYS VAL LYS ILE SEQRES 18 A 381 ALA ASP LEU GLY ASN ALA CYS TRP VAL HIS LYS HIS PHE SEQRES 19 A 381 THR GLU ASP ILE GLN THR ARG GLN TYR ARG SER LEU GLU SEQRES 20 A 381 VAL LEU ILE GLY SER GLY TYR ASN THR PRO ALA ASP ILE SEQRES 21 A 381 TRP SER THR ALA CYS MET ALA PHE GLU LEU ALA THR GLY SEQRES 22 A 381 ASP TYR LEU PHE GLU PRO HIS SER GLY GLU GLU TYR THR SEQRES 23 A 381 ARG ASP GLU ASP HIS ILE ALA LEU ILE ILE GLU LEU LEU SEQRES 24 A 381 GLY LYS VAL PRO ARG LYS LEU ILE VAL ALA GLY LYS TYR SEQRES 25 A 381 SER LYS GLU PHE PHE THR LYS LYS GLY ASP LEU LYS HIS SEQRES 26 A 381 ILE THR LYS LEU LYS PRO TRP GLY LEU PHE GLU VAL LEU SEQRES 27 A 381 VAL GLU LYS TYR GLU TRP SER GLN GLU GLU ALA ALA GLY SEQRES 28 A 381 PHE THR ASP PHE LEU LEU PRO MET LEU GLU LEU ILE PRO SEQRES 29 A 381 GLU LYS ARG ALA THR ALA ALA GLU CYS LEU ARG HIS PRO SEQRES 30 A 381 TRP LEU ASN SER SEQRES 1 B 115 GLY GLY ALA PRO ARG GLY ARG TYR GLY PRO PRO SER ARG SEQRES 2 B 115 ARG SER GLU ASN ARG VAL VAL VAL SER GLY LEU PRO PRO SEQRES 3 B 115 SER GLY SER TRP GLN ASP LEU LYS ASP HIS MET ARG GLU SEQRES 4 B 115 ALA GLY ASP VAL CYS TYR ALA ASP VAL TYR ARG ASP GLY SEQRES 5 B 115 THR GLY VAL VAL GLU PHE VAL ARG LYS GLU ASP MET THR SEQRES 6 B 115 TYR ALA VAL ARG LYS LEU ASP ASN THR LYS PHE ARG SER SEQRES 7 B 115 HIS GLU GLY GLU THR ALA TYR ILE ARG VAL LYS VAL ASP SEQRES 8 B 115 GLY PRO ARG SER PRO SER TYR GLY ARG SER ARG SER ARG SEQRES 9 B 115 SER ARG SER ARG SER ARG SER ARG SER ARG SER HET SEP A 1 10 HET ALA A 2 5 HET ANP A 656 31 HETNAM SEP PHOSPHOSERINE HETNAM ALA ALANINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP C3 H8 N O6 P FORMUL 4 ALA C3 H7 N O2 FORMUL 5 ANP C10 H17 N6 O12 P3 HELIX 1 1 ALA A 114 ASN A 133 1 20 HELIX 2 2 HIS A 171 SER A 179 1 9 HELIX 3 3 PRO A 185 CYS A 207 1 23 HELIX 4 4 ASN A 224 ALA A 233 1 10 HELIX 5 5 GLU A 484 ALA A 488 5 5 HELIX 6 6 THR A 514 ARG A 518 5 5 HELIX 7 7 SER A 519 GLY A 525 1 7 HELIX 8 8 THR A 530 GLY A 547 1 18 HELIX 9 9 THR A 560 GLY A 574 1 15 HELIX 10 10 PRO A 577 VAL A 582 1 6 HELIX 11 11 TYR A 586 PHE A 591 1 6 HELIX 12 12 GLY A 607 LYS A 615 1 9 HELIX 13 13 GLU A 621 PHE A 626 1 6 HELIX 14 14 PHE A 626 LEU A 634 1 9 HELIX 15 15 THR A 643 ARG A 649 1 7 HELIX 16 16 HIS A 650 SER A 655 5 6 HELIX 17 17 GLN B 135 ARG B 142 1 8 HELIX 18 18 GLU B 143 GLY B 145 5 3 HELIX 19 19 ARG B 164 ASP B 176 1 13 SHEET 1 A 6 LEU A 75 PHE A 76 0 SHEET 2 A 6 TYR A 80 TRP A 88 -1 O TYR A 80 N PHE A 76 SHEET 3 A 6 SER A 92 ASP A 99 -1 O VAL A 94 N GLY A 87 SHEET 4 A 6 PHE A 105 VAL A 111 -1 O VAL A 106 N SER A 97 SHEET 5 A 6 CYS A 162 PHE A 165 -1 O PHE A 165 N ALA A 107 SHEET 6 A 6 LEU A 147 PHE A 151 -1 N LEU A 148 O VAL A 164 SHEET 1 B 2 ILE A 209 ILE A 210 0 SHEET 2 B 2 CYS A 502 TRP A 503 -1 O CYS A 502 N ILE A 210 SHEET 1 C 2 ILE A 219 LEU A 221 0 SHEET 2 C 2 VAL A 493 ILE A 495 -1 O LYS A 494 N LEU A 220 SHEET 1 D 4 VAL B 147 VAL B 152 0 SHEET 2 D 4 THR B 157 PHE B 162 -1 O VAL B 159 N ASP B 151 SHEET 3 D 4 VAL B 123 GLY B 127 -1 N VAL B 124 O VAL B 160 SHEET 4 D 4 ARG B 191 VAL B 194 -1 O LYS B 193 N VAL B 125 LINK C SEP A 1 N ALA A 2 1555 1555 1.33 SITE 1 AC1 3 ALA A 2 ARG A 515 ARG A 518 SITE 1 AC2 3 ARG A 561 TYR B 149 TYR B 153 SITE 1 AC3 8 LEU A 86 GLY A 89 HIS A 90 PHE A 91 SITE 2 AC3 8 SER A 92 GLU A 166 LEU A 168 ASP A 497 CRYST1 57.406 117.525 193.554 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017420 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008509 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005167 0.00000