data_3BFM # _entry.id 3BFM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BFM pdb_00003bfm 10.2210/pdb3bfm/pdb RCSB RCSB045459 ? ? WWPDB D_1000045459 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 377806 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3BFM _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-11-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of biotin protein ligase-like protein of unknown function (YP_612389.1) from Silicibacter sp. TM1040 at 1.70 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3BFM _cell.length_a 86.760 _cell.length_b 36.560 _cell.length_c 71.000 _cell.angle_alpha 90.000 _cell.angle_beta 99.280 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BFM _symmetry.Int_Tables_number 5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Biotin protein ligase-like protein of unknown function' 25386.656 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer syn 'NONAETHYLENE GLYCOL' 414.488 1 ? ? ? ? 4 water nat water 18.015 169 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SETITFPPL(MSE)TGEAAGPGQDPFDLACQKAELGVDAGLVVYELGTDVLRAALVLAPEVPLAKA(MSE)A (MSE)LPVCGVGFQNALGALAPPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPD ETALYAEGCADVAAPRLLESWARHCLHWINRWDEGELETIHGEWRGLAHG(MSE)GEARTEAGRSGTFLGVDEDFG (MSE)LLRDETTTHLIPLTTVLVQD ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSETITFPPLMTGEAAGPGQDPFDLACQKAELGVDAGLVVYELGTDVLRAALVLAPEVPLAKAMAMLPVCGVGFQNALG ALAPPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALYAEGCADVAAPRLL ESWARHCLHWINRWDEGELETIHGEWRGLAHGMGEARTEAGRSGTFLGVDEDFGMLLRDETTTHLIPLTTVLVQD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 377806 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 GLU n 1 5 THR n 1 6 ILE n 1 7 THR n 1 8 PHE n 1 9 PRO n 1 10 PRO n 1 11 LEU n 1 12 MSE n 1 13 THR n 1 14 GLY n 1 15 GLU n 1 16 ALA n 1 17 ALA n 1 18 GLY n 1 19 PRO n 1 20 GLY n 1 21 GLN n 1 22 ASP n 1 23 PRO n 1 24 PHE n 1 25 ASP n 1 26 LEU n 1 27 ALA n 1 28 CYS n 1 29 GLN n 1 30 LYS n 1 31 ALA n 1 32 GLU n 1 33 LEU n 1 34 GLY n 1 35 VAL n 1 36 ASP n 1 37 ALA n 1 38 GLY n 1 39 LEU n 1 40 VAL n 1 41 VAL n 1 42 TYR n 1 43 GLU n 1 44 LEU n 1 45 GLY n 1 46 THR n 1 47 ASP n 1 48 VAL n 1 49 LEU n 1 50 ARG n 1 51 ALA n 1 52 ALA n 1 53 LEU n 1 54 VAL n 1 55 LEU n 1 56 ALA n 1 57 PRO n 1 58 GLU n 1 59 VAL n 1 60 PRO n 1 61 LEU n 1 62 ALA n 1 63 LYS n 1 64 ALA n 1 65 MSE n 1 66 ALA n 1 67 MSE n 1 68 LEU n 1 69 PRO n 1 70 VAL n 1 71 CYS n 1 72 GLY n 1 73 VAL n 1 74 GLY n 1 75 PHE n 1 76 GLN n 1 77 ASN n 1 78 ALA n 1 79 LEU n 1 80 GLY n 1 81 ALA n 1 82 LEU n 1 83 ALA n 1 84 PRO n 1 85 PRO n 1 86 GLU n 1 87 VAL n 1 88 ALA n 1 89 VAL n 1 90 HIS n 1 91 LEU n 1 92 ASP n 1 93 TRP n 1 94 ASN n 1 95 GLY n 1 96 ALA n 1 97 LEU n 1 98 ARG n 1 99 ILE n 1 100 ASN n 1 101 GLY n 1 102 ALA n 1 103 ARG n 1 104 CYS n 1 105 GLY n 1 106 ARG n 1 107 LEU n 1 108 ARG n 1 109 ILE n 1 110 ALA n 1 111 ALA n 1 112 SER n 1 113 THR n 1 114 ASP n 1 115 ASP n 1 116 PRO n 1 117 ASP n 1 118 THR n 1 119 GLN n 1 120 PRO n 1 121 ASP n 1 122 TRP n 1 123 LEU n 1 124 VAL n 1 125 VAL n 1 126 GLY n 1 127 LEU n 1 128 ASP n 1 129 LEU n 1 130 PRO n 1 131 LEU n 1 132 TRP n 1 133 PRO n 1 134 GLU n 1 135 GLY n 1 136 ASP n 1 137 GLY n 1 138 GLY n 1 139 GLU n 1 140 THR n 1 141 PRO n 1 142 ASP n 1 143 GLU n 1 144 THR n 1 145 ALA n 1 146 LEU n 1 147 TYR n 1 148 ALA n 1 149 GLU n 1 150 GLY n 1 151 CYS n 1 152 ALA n 1 153 ASP n 1 154 VAL n 1 155 ALA n 1 156 ALA n 1 157 PRO n 1 158 ARG n 1 159 LEU n 1 160 LEU n 1 161 GLU n 1 162 SER n 1 163 TRP n 1 164 ALA n 1 165 ARG n 1 166 HIS n 1 167 CYS n 1 168 LEU n 1 169 HIS n 1 170 TRP n 1 171 ILE n 1 172 ASN n 1 173 ARG n 1 174 TRP n 1 175 ASP n 1 176 GLU n 1 177 GLY n 1 178 GLU n 1 179 LEU n 1 180 GLU n 1 181 THR n 1 182 ILE n 1 183 HIS n 1 184 GLY n 1 185 GLU n 1 186 TRP n 1 187 ARG n 1 188 GLY n 1 189 LEU n 1 190 ALA n 1 191 HIS n 1 192 GLY n 1 193 MSE n 1 194 GLY n 1 195 GLU n 1 196 ALA n 1 197 ARG n 1 198 THR n 1 199 GLU n 1 200 ALA n 1 201 GLY n 1 202 ARG n 1 203 SER n 1 204 GLY n 1 205 THR n 1 206 PHE n 1 207 LEU n 1 208 GLY n 1 209 VAL n 1 210 ASP n 1 211 GLU n 1 212 ASP n 1 213 PHE n 1 214 GLY n 1 215 MSE n 1 216 LEU n 1 217 LEU n 1 218 ARG n 1 219 ASP n 1 220 GLU n 1 221 THR n 1 222 THR n 1 223 THR n 1 224 HIS n 1 225 LEU n 1 226 ILE n 1 227 PRO n 1 228 LEU n 1 229 THR n 1 230 THR n 1 231 VAL n 1 232 LEU n 1 233 VAL n 1 234 GLN n 1 235 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Silicibacter _entity_src_gen.pdbx_gene_src_gene 'YP_612389.1, TM1040_0394' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain TM1040 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Silicibacter sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 292414 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q1GJN9_SILST _struct_ref.pdbx_db_accession Q1GJN9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSETITFPPLMTGEAAGPGQDPFDLACQKAELGVDAGLVVYELGTDVLRAALVLAPEVPLAKAMAMLPVCGVGFQNALGA LAPPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALYAEGCADVAAPRLLE SWARHCLHWINRWDEGELETIHGEWRGLAHGMGEARTEAGRSGTFLGVDEDFGMLLRDETTTHLIPLTTVLVQD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BFM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 235 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q1GJN9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 234 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 234 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3BFM _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q1GJN9 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2PE non-polymer . 'NONAETHYLENE GLYCOL' ? 'C18 H38 O10' 414.488 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3BFM # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 0.2M Ca(OAc)2, 40.0% PEG 400, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.details 'Adjustable focusing mirrors in K-B geometry' _diffrn_detector.pdbx_collection_date 2007-10-26 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91840 1.0 2 0.97953 1.0 3 0.97939 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_wavelength_list '0.91840, 0.97953, 0.97939' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 3BFM _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 29.553 _reflns.number_obs 24223 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_netI_over_sigmaI 7.080 _reflns.percent_possible_obs 97.500 _reflns.B_iso_Wilson_estimate 21.03 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 3.33 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.70 1.80 11773 ? 7112 0.532 1.6 ? ? ? ? ? 95.10 1 1 1.80 1.90 10241 ? 5818 0.447 2.3 ? ? ? ? ? 97.20 2 1 1.90 2.00 8293 ? 4702 0.328 3.5 ? ? ? ? ? 97.40 3 1 2.00 2.07 4988 ? 2805 0.258 4.5 ? ? ? ? ? 97.90 4 1 2.07 2.15 4957 ? 2788 0.199 5.6 ? ? ? ? ? 97.80 5 1 2.15 2.25 5148 ? 2929 0.166 6.4 ? ? ? ? ? 98.60 6 1 2.25 2.37 5101 ? 2887 0.135 7.2 ? ? ? ? ? 98.20 7 1 2.37 2.52 5080 ? 2866 0.104 8.5 ? ? ? ? ? 98.60 8 1 2.52 2.71 4966 ? 2816 0.079 9.7 ? ? ? ? ? 98.50 9 1 2.71 2.99 5087 ? 2972 0.063 11.4 ? ? ? ? ? 98.50 10 1 2.99 3.42 4907 ? 2824 0.051 13.7 ? ? ? ? ? 98.50 11 1 3.42 4.30 5047 ? 2859 0.046 15.8 ? ? ? ? ? 98.50 12 1 4.30 29.553 5152 ? 2861 0.037 17.0 ? ? ? ? ? 97.30 13 1 # _refine.entry_id 3BFM _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 29.553 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.780 _refine.ls_number_reflns_obs 24219 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. THE LOOP BETWEEN RESIDUES 134-138 HAS POOR DENSITY. 4. CALCIUM IONS AND PEG 400 (2PE) ARE PRESENT IN THE CRYSTALLIZATION/CRYO CONDITIONS. ; _refine.ls_R_factor_obs 0.182 _refine.ls_R_factor_R_work 0.179 _refine.ls_R_factor_R_free 0.226 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1211 _refine.B_iso_mean 20.605 _refine.aniso_B[1][1] 0.030 _refine.aniso_B[2][2] -0.440 _refine.aniso_B[3][3] 0.640 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.710 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.pdbx_overall_ESU_R 0.111 _refine.pdbx_overall_ESU_R_Free 0.114 _refine.overall_SU_ML 0.083 _refine.overall_SU_B 2.515 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1704 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 169 _refine_hist.number_atoms_total 1887 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 29.553 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1803 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1189 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2477 1.458 1.978 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2912 0.931 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 245 5.641 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 70 32.898 23.429 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 266 13.139 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 15.230 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 286 0.077 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2045 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 353 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 344 0.216 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1261 0.203 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 869 0.177 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 970 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 120 0.153 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 6 0.055 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 10 0.190 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 20 0.237 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 19 0.217 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 1 0.006 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1200 2.140 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 477 0.560 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1865 3.237 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 701 5.148 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 604 7.548 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.170 _refine_ls_shell.number_reflns_R_work 1659 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.288 _refine_ls_shell.R_factor_R_free 0.316 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 101 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1760 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BFM _struct.title ;Crystal structure of a biotin protein ligase-like protein of unknown function (tm1040_0394) from silicibacter sp. tm1040 at 1.70 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3BFM # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 22 ? LEU A 33 ? ASP A 21 LEU A 32 1 ? 12 HELX_P HELX_P2 2 PRO A 60 ? MSE A 65 ? PRO A 59 MSE A 64 1 ? 6 HELX_P HELX_P3 3 ALA A 66 ? ALA A 83 ? ALA A 65 ALA A 82 1 ? 18 HELX_P HELX_P4 4 ALA A 145 ? GLU A 149 ? ALA A 144 GLU A 148 5 ? 5 HELX_P HELX_P5 5 ALA A 155 ? GLU A 176 ? ALA A 154 GLU A 175 1 ? 22 HELX_P HELX_P6 6 GLU A 178 ? ALA A 190 ? GLU A 177 ALA A 189 1 ? 13 HELX_P HELX_P7 7 PRO A 227 ? LEU A 232 ? PRO A 226 LEU A 231 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 11 C ? ? ? 1_555 A MSE 12 N ? ? A LEU 10 A MSE 11 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale2 covale both ? A MSE 12 C ? ? ? 1_555 A THR 13 N ? ? A MSE 11 A THR 12 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale3 covale both ? A ALA 64 C ? ? ? 1_555 A MSE 65 N ? ? A ALA 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale4 covale both ? A MSE 65 C ? ? ? 1_555 A ALA 66 N ? ? A MSE 64 A ALA 65 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale5 covale both ? A ALA 66 C ? ? ? 1_555 A MSE 67 N ? ? A ALA 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A MSE 67 C ? ? ? 1_555 A LEU 68 N ? ? A MSE 66 A LEU 67 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale7 covale both ? A GLY 192 C ? ? ? 1_555 A MSE 193 N ? ? A GLY 191 A MSE 192 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale8 covale both ? A MSE 193 C ? ? ? 1_555 A GLY 194 N ? ? A MSE 192 A GLY 193 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale9 covale both ? A GLY 214 C ? ? ? 1_555 A MSE 215 N ? ? A GLY 213 A MSE 214 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale10 covale both ? A MSE 215 C ? ? ? 1_555 A LEU 216 N ? ? A MSE 214 A LEU 215 1_555 ? ? ? ? ? ? ? 1.324 ? ? metalc1 metalc ? ? A GLN 21 O ? ? ? 1_555 B CA . CA ? ? A GLN 20 A CA 235 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc2 metalc ? ? A ASP 22 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 21 A CA 235 1_555 ? ? ? ? ? ? ? 2.354 ? ? metalc3 metalc ? ? A ALA 37 O ? ? ? 1_555 C CA . CA ? ? A ALA 36 A CA 236 1_555 ? ? ? ? ? ? ? 2.433 ? ? metalc4 metalc ? ? A GLU 43 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 42 A CA 235 1_555 ? ? ? ? ? ? ? 2.471 ? ? metalc5 metalc ? ? A GLU 43 OE2 ? ? ? 1_555 B CA . CA ? ? A GLU 42 A CA 235 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 235 A HOH 246 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc7 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 235 A HOH 249 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc8 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 235 A HOH 262 1_555 ? ? ? ? ? ? ? 2.454 ? ? metalc9 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 236 A HOH 239 1_555 ? ? ? ? ? ? ? 2.447 ? ? metalc10 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 236 A HOH 242 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc11 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 236 A HOH 270 1_555 ? ? ? ? ? ? ? 2.456 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 13 ? ALA A 16 ? THR A 12 ALA A 15 A 2 LEU A 39 ? LEU A 44 ? LEU A 38 LEU A 43 A 3 VAL A 48 ? LEU A 55 ? VAL A 47 LEU A 54 A 4 LEU A 123 ? PRO A 130 ? LEU A 122 PRO A 129 A 5 ALA A 102 ? ALA A 111 ? ALA A 101 ALA A 110 A 6 ALA A 96 ? ILE A 99 ? ALA A 95 ILE A 98 A 7 VAL A 89 ? LEU A 91 ? VAL A 88 LEU A 90 B 1 ALA A 196 ? GLU A 199 ? ALA A 195 GLU A 198 B 2 ARG A 202 ? VAL A 209 ? ARG A 201 VAL A 208 B 3 MSE A 215 ? ARG A 218 ? MSE A 214 ARG A 217 B 4 THR A 223 ? ILE A 226 ? THR A 222 ILE A 225 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 13 ? N THR A 12 O VAL A 40 ? O VAL A 39 A 2 3 N GLU A 43 ? N GLU A 42 O ARG A 50 ? O ARG A 49 A 3 4 N LEU A 55 ? N LEU A 54 O LEU A 123 ? O LEU A 122 A 4 5 O GLY A 126 ? O GLY A 125 N ARG A 108 ? N ARG A 107 A 5 6 O ALA A 102 ? O ALA A 101 N ILE A 99 ? N ILE A 98 A 6 7 O ARG A 98 ? O ARG A 97 N HIS A 90 ? N HIS A 89 B 1 2 N GLU A 199 ? N GLU A 198 O ARG A 202 ? O ARG A 201 B 2 3 N GLY A 208 ? N GLY A 207 O LEU A 216 ? O LEU A 215 B 3 4 N LEU A 217 ? N LEU A 216 O HIS A 224 ? O HIS A 223 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 235 ? 6 'BINDING SITE FOR RESIDUE CA A 235' AC2 Software A CA 236 ? 8 'BINDING SITE FOR RESIDUE CA A 236' AC3 Software A 2PE 237 ? 6 'BINDING SITE FOR RESIDUE 2PE A 237' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLN A 21 ? GLN A 20 . ? 1_555 ? 2 AC1 6 ASP A 22 ? ASP A 21 . ? 1_555 ? 3 AC1 6 GLU A 43 ? GLU A 42 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH A 246 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 249 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 262 . ? 1_555 ? 7 AC2 8 ALA A 37 ? ALA A 36 . ? 1_555 ? 8 AC2 8 ALA A 37 ? ALA A 36 . ? 2_656 ? 9 AC2 8 HOH E . ? HOH A 239 . ? 2_656 ? 10 AC2 8 HOH E . ? HOH A 239 . ? 1_555 ? 11 AC2 8 HOH E . ? HOH A 242 . ? 2_656 ? 12 AC2 8 HOH E . ? HOH A 242 . ? 1_555 ? 13 AC2 8 HOH E . ? HOH A 270 . ? 2_656 ? 14 AC2 8 HOH E . ? HOH A 270 . ? 1_555 ? 15 AC3 6 GLU A 15 ? GLU A 14 . ? 1_555 ? 16 AC3 6 ALA A 16 ? ALA A 15 . ? 1_555 ? 17 AC3 6 TYR A 42 ? TYR A 41 . ? 1_555 ? 18 AC3 6 LEU A 216 ? LEU A 215 . ? 3_545 ? 19 AC3 6 HOH E . ? HOH A 311 . ? 1_555 ? 20 AC3 6 HOH E . ? HOH A 406 . ? 1_555 ? # _atom_sites.entry_id 3BFM _atom_sites.fract_transf_matrix[1][1] 0.011526 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001883 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027352 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014271 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 SER 3 2 ? ? ? A . n A 1 4 GLU 4 3 ? ? ? A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 PHE 8 7 7 PHE PHE A . n A 1 9 PRO 9 8 8 PRO PRO A . n A 1 10 PRO 10 9 9 PRO PRO A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 MSE 12 11 11 MSE MSE A . n A 1 13 THR 13 12 12 THR THR A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 GLN 21 20 20 GLN GLN A . n A 1 22 ASP 22 21 21 ASP ASP A . n A 1 23 PRO 23 22 22 PRO PRO A . n A 1 24 PHE 24 23 23 PHE PHE A . n A 1 25 ASP 25 24 24 ASP ASP A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 CYS 28 27 27 CYS CYS A . n A 1 29 GLN 29 28 28 GLN GLN A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 VAL 35 34 34 VAL VAL A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 GLY 38 37 37 GLY GLY A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 VAL 40 39 39 VAL VAL A . n A 1 41 VAL 41 40 40 VAL VAL A . n A 1 42 TYR 42 41 41 TYR TYR A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 THR 46 45 45 THR THR A . n A 1 47 ASP 47 46 46 ASP ASP A . n A 1 48 VAL 48 47 47 VAL VAL A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 ARG 50 49 49 ARG ARG A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 ALA 52 51 51 ALA ALA A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 VAL 54 53 53 VAL VAL A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 PRO 57 56 56 PRO PRO A . n A 1 58 GLU 58 57 57 GLU GLU A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 PRO 60 59 59 PRO PRO A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 LYS 63 62 62 LYS LYS A . n A 1 64 ALA 64 63 63 ALA ALA A . n A 1 65 MSE 65 64 64 MSE MSE A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 MSE 67 66 66 MSE MSE A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 PRO 69 68 68 PRO PRO A . n A 1 70 VAL 70 69 69 VAL VAL A . n A 1 71 CYS 71 70 70 CYS CYS A . n A 1 72 GLY 72 71 71 GLY GLY A . n A 1 73 VAL 73 72 72 VAL VAL A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 PHE 75 74 74 PHE PHE A . n A 1 76 GLN 76 75 75 GLN GLN A . n A 1 77 ASN 77 76 76 ASN ASN A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 ALA 81 80 80 ALA ALA A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 PRO 84 83 83 PRO PRO A . n A 1 85 PRO 85 84 84 PRO PRO A . n A 1 86 GLU 86 85 85 GLU GLU A . n A 1 87 VAL 87 86 86 VAL VAL A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 VAL 89 88 88 VAL VAL A . n A 1 90 HIS 90 89 89 HIS HIS A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 ASP 92 91 91 ASP ASP A . n A 1 93 TRP 93 92 92 TRP TRP A . n A 1 94 ASN 94 93 93 ASN ASN A . n A 1 95 GLY 95 94 94 GLY GLY A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 ILE 99 98 98 ILE ILE A . n A 1 100 ASN 100 99 99 ASN ASN A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 ARG 103 102 102 ARG ARG A . n A 1 104 CYS 104 103 103 CYS CYS A . n A 1 105 GLY 105 104 104 GLY GLY A . n A 1 106 ARG 106 105 105 ARG ARG A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 ARG 108 107 107 ARG ARG A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 ALA 110 109 109 ALA ALA A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 THR 113 112 112 THR THR A . n A 1 114 ASP 114 113 113 ASP ASP A . n A 1 115 ASP 115 114 114 ASP ASP A . n A 1 116 PRO 116 115 115 PRO PRO A . n A 1 117 ASP 117 116 116 ASP ASP A . n A 1 118 THR 118 117 117 THR THR A . n A 1 119 GLN 119 118 118 GLN GLN A . n A 1 120 PRO 120 119 119 PRO PRO A . n A 1 121 ASP 121 120 120 ASP ASP A . n A 1 122 TRP 122 121 121 TRP TRP A . n A 1 123 LEU 123 122 122 LEU LEU A . n A 1 124 VAL 124 123 123 VAL VAL A . n A 1 125 VAL 125 124 124 VAL VAL A . n A 1 126 GLY 126 125 125 GLY GLY A . n A 1 127 LEU 127 126 126 LEU LEU A . n A 1 128 ASP 128 127 127 ASP ASP A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 PRO 130 129 129 PRO PRO A . n A 1 131 LEU 131 130 130 LEU LEU A . n A 1 132 TRP 132 131 131 TRP TRP A . n A 1 133 PRO 133 132 132 PRO PRO A . n A 1 134 GLU 134 133 133 GLU GLU A . n A 1 135 GLY 135 134 134 GLY GLY A . n A 1 136 ASP 136 135 135 ASP ASP A . n A 1 137 GLY 137 136 136 GLY GLY A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 GLU 139 138 138 GLU GLU A . n A 1 140 THR 140 139 139 THR THR A . n A 1 141 PRO 141 140 140 PRO PRO A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 GLU 143 142 142 GLU GLU A . n A 1 144 THR 144 143 143 THR THR A . n A 1 145 ALA 145 144 144 ALA ALA A . n A 1 146 LEU 146 145 145 LEU LEU A . n A 1 147 TYR 147 146 146 TYR TYR A . n A 1 148 ALA 148 147 147 ALA ALA A . n A 1 149 GLU 149 148 148 GLU GLU A . n A 1 150 GLY 150 149 149 GLY GLY A . n A 1 151 CYS 151 150 150 CYS CYS A . n A 1 152 ALA 152 151 151 ALA ALA A . n A 1 153 ASP 153 152 152 ASP ASP A . n A 1 154 VAL 154 153 153 VAL VAL A . n A 1 155 ALA 155 154 154 ALA ALA A . n A 1 156 ALA 156 155 155 ALA ALA A . n A 1 157 PRO 157 156 156 PRO PRO A . n A 1 158 ARG 158 157 157 ARG ARG A . n A 1 159 LEU 159 158 158 LEU LEU A . n A 1 160 LEU 160 159 159 LEU LEU A . n A 1 161 GLU 161 160 160 GLU GLU A . n A 1 162 SER 162 161 161 SER SER A . n A 1 163 TRP 163 162 162 TRP TRP A . n A 1 164 ALA 164 163 163 ALA ALA A . n A 1 165 ARG 165 164 164 ARG ARG A . n A 1 166 HIS 166 165 165 HIS HIS A . n A 1 167 CYS 167 166 166 CYS CYS A . n A 1 168 LEU 168 167 167 LEU LEU A . n A 1 169 HIS 169 168 168 HIS HIS A . n A 1 170 TRP 170 169 169 TRP TRP A . n A 1 171 ILE 171 170 170 ILE ILE A . n A 1 172 ASN 172 171 171 ASN ASN A . n A 1 173 ARG 173 172 172 ARG ARG A . n A 1 174 TRP 174 173 173 TRP TRP A . n A 1 175 ASP 175 174 174 ASP ASP A . n A 1 176 GLU 176 175 175 GLU GLU A . n A 1 177 GLY 177 176 176 GLY GLY A . n A 1 178 GLU 178 177 177 GLU GLU A . n A 1 179 LEU 179 178 178 LEU LEU A . n A 1 180 GLU 180 179 179 GLU GLU A . n A 1 181 THR 181 180 180 THR THR A . n A 1 182 ILE 182 181 181 ILE ILE A . n A 1 183 HIS 183 182 182 HIS HIS A . n A 1 184 GLY 184 183 183 GLY GLY A . n A 1 185 GLU 185 184 184 GLU GLU A . n A 1 186 TRP 186 185 185 TRP TRP A . n A 1 187 ARG 187 186 186 ARG ARG A . n A 1 188 GLY 188 187 187 GLY GLY A . n A 1 189 LEU 189 188 188 LEU LEU A . n A 1 190 ALA 190 189 189 ALA ALA A . n A 1 191 HIS 191 190 190 HIS HIS A . n A 1 192 GLY 192 191 191 GLY GLY A . n A 1 193 MSE 193 192 192 MSE MSE A . n A 1 194 GLY 194 193 193 GLY GLY A . n A 1 195 GLU 195 194 194 GLU GLU A . n A 1 196 ALA 196 195 195 ALA ALA A . n A 1 197 ARG 197 196 196 ARG ARG A . n A 1 198 THR 198 197 197 THR THR A . n A 1 199 GLU 199 198 198 GLU GLU A . n A 1 200 ALA 200 199 199 ALA ALA A . n A 1 201 GLY 201 200 200 GLY GLY A . n A 1 202 ARG 202 201 201 ARG ARG A . n A 1 203 SER 203 202 202 SER SER A . n A 1 204 GLY 204 203 203 GLY GLY A . n A 1 205 THR 205 204 204 THR THR A . n A 1 206 PHE 206 205 205 PHE PHE A . n A 1 207 LEU 207 206 206 LEU LEU A . n A 1 208 GLY 208 207 207 GLY GLY A . n A 1 209 VAL 209 208 208 VAL VAL A . n A 1 210 ASP 210 209 209 ASP ASP A . n A 1 211 GLU 211 210 210 GLU GLU A . n A 1 212 ASP 212 211 211 ASP ASP A . n A 1 213 PHE 213 212 212 PHE PHE A . n A 1 214 GLY 214 213 213 GLY GLY A . n A 1 215 MSE 215 214 214 MSE MSE A . n A 1 216 LEU 216 215 215 LEU LEU A . n A 1 217 LEU 217 216 216 LEU LEU A . n A 1 218 ARG 218 217 217 ARG ARG A . n A 1 219 ASP 219 218 218 ASP ASP A . n A 1 220 GLU 220 219 219 GLU GLU A . n A 1 221 THR 221 220 220 THR THR A . n A 1 222 THR 222 221 221 THR THR A . n A 1 223 THR 223 222 222 THR THR A . n A 1 224 HIS 224 223 223 HIS HIS A . n A 1 225 LEU 225 224 224 LEU LEU A . n A 1 226 ILE 226 225 225 ILE ILE A . n A 1 227 PRO 227 226 226 PRO PRO A . n A 1 228 LEU 228 227 227 LEU LEU A . n A 1 229 THR 229 228 228 THR THR A . n A 1 230 THR 230 229 229 THR THR A . n A 1 231 VAL 231 230 230 VAL VAL A . n A 1 232 LEU 232 231 231 LEU LEU A . n A 1 233 VAL 233 232 232 VAL VAL A . n A 1 234 GLN 234 233 233 GLN GLN A . n A 1 235 ASP 235 234 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 235 1 CA CA A . C 2 CA 1 236 2 CA CA A . D 3 2PE 1 237 3 2PE 2PE A . E 4 HOH 1 238 4 HOH HOH A . E 4 HOH 2 239 5 HOH HOH A . E 4 HOH 3 240 6 HOH HOH A . E 4 HOH 4 241 7 HOH HOH A . E 4 HOH 5 242 8 HOH HOH A . E 4 HOH 6 243 9 HOH HOH A . E 4 HOH 7 244 10 HOH HOH A . E 4 HOH 8 245 11 HOH HOH A . E 4 HOH 9 246 12 HOH HOH A . E 4 HOH 10 247 13 HOH HOH A . E 4 HOH 11 248 14 HOH HOH A . E 4 HOH 12 249 15 HOH HOH A . E 4 HOH 13 250 16 HOH HOH A . E 4 HOH 14 251 17 HOH HOH A . E 4 HOH 15 252 18 HOH HOH A . E 4 HOH 16 253 19 HOH HOH A . E 4 HOH 17 254 20 HOH HOH A . E 4 HOH 18 255 21 HOH HOH A . E 4 HOH 19 256 22 HOH HOH A . E 4 HOH 20 257 23 HOH HOH A . E 4 HOH 21 258 24 HOH HOH A . E 4 HOH 22 259 25 HOH HOH A . E 4 HOH 23 260 26 HOH HOH A . E 4 HOH 24 261 27 HOH HOH A . E 4 HOH 25 262 28 HOH HOH A . E 4 HOH 26 263 29 HOH HOH A . E 4 HOH 27 264 30 HOH HOH A . E 4 HOH 28 265 31 HOH HOH A . E 4 HOH 29 266 32 HOH HOH A . E 4 HOH 30 267 33 HOH HOH A . E 4 HOH 31 268 34 HOH HOH A . E 4 HOH 32 269 35 HOH HOH A . E 4 HOH 33 270 36 HOH HOH A . E 4 HOH 34 271 37 HOH HOH A . E 4 HOH 35 272 38 HOH HOH A . E 4 HOH 36 273 39 HOH HOH A . E 4 HOH 37 274 40 HOH HOH A . E 4 HOH 38 275 41 HOH HOH A . E 4 HOH 39 276 42 HOH HOH A . E 4 HOH 40 277 43 HOH HOH A . E 4 HOH 41 278 44 HOH HOH A . E 4 HOH 42 279 45 HOH HOH A . E 4 HOH 43 280 46 HOH HOH A . E 4 HOH 44 281 47 HOH HOH A . E 4 HOH 45 282 48 HOH HOH A . E 4 HOH 46 283 49 HOH HOH A . E 4 HOH 47 284 50 HOH HOH A . E 4 HOH 48 285 51 HOH HOH A . E 4 HOH 49 286 52 HOH HOH A . E 4 HOH 50 287 53 HOH HOH A . E 4 HOH 51 288 54 HOH HOH A . E 4 HOH 52 289 55 HOH HOH A . E 4 HOH 53 290 56 HOH HOH A . E 4 HOH 54 291 57 HOH HOH A . E 4 HOH 55 292 58 HOH HOH A . E 4 HOH 56 293 59 HOH HOH A . E 4 HOH 57 294 60 HOH HOH A . E 4 HOH 58 295 61 HOH HOH A . E 4 HOH 59 296 62 HOH HOH A . E 4 HOH 60 297 63 HOH HOH A . E 4 HOH 61 298 64 HOH HOH A . E 4 HOH 62 299 65 HOH HOH A . E 4 HOH 63 300 66 HOH HOH A . E 4 HOH 64 301 67 HOH HOH A . E 4 HOH 65 302 68 HOH HOH A . E 4 HOH 66 303 69 HOH HOH A . E 4 HOH 67 304 70 HOH HOH A . E 4 HOH 68 305 71 HOH HOH A . E 4 HOH 69 306 72 HOH HOH A . E 4 HOH 70 307 73 HOH HOH A . E 4 HOH 71 308 74 HOH HOH A . E 4 HOH 72 309 75 HOH HOH A . E 4 HOH 73 310 76 HOH HOH A . E 4 HOH 74 311 77 HOH HOH A . E 4 HOH 75 312 78 HOH HOH A . E 4 HOH 76 313 79 HOH HOH A . E 4 HOH 77 314 80 HOH HOH A . E 4 HOH 78 315 81 HOH HOH A . E 4 HOH 79 316 82 HOH HOH A . E 4 HOH 80 317 83 HOH HOH A . E 4 HOH 81 318 84 HOH HOH A . E 4 HOH 82 319 85 HOH HOH A . E 4 HOH 83 320 86 HOH HOH A . E 4 HOH 84 321 87 HOH HOH A . E 4 HOH 85 322 88 HOH HOH A . E 4 HOH 86 323 89 HOH HOH A . E 4 HOH 87 324 90 HOH HOH A . E 4 HOH 88 325 91 HOH HOH A . E 4 HOH 89 326 92 HOH HOH A . E 4 HOH 90 327 93 HOH HOH A . E 4 HOH 91 328 94 HOH HOH A . E 4 HOH 92 329 95 HOH HOH A . E 4 HOH 93 330 96 HOH HOH A . E 4 HOH 94 331 97 HOH HOH A . E 4 HOH 95 332 98 HOH HOH A . E 4 HOH 96 333 99 HOH HOH A . E 4 HOH 97 334 100 HOH HOH A . E 4 HOH 98 335 101 HOH HOH A . E 4 HOH 99 336 102 HOH HOH A . E 4 HOH 100 337 103 HOH HOH A . E 4 HOH 101 338 104 HOH HOH A . E 4 HOH 102 339 105 HOH HOH A . E 4 HOH 103 340 106 HOH HOH A . E 4 HOH 104 341 107 HOH HOH A . E 4 HOH 105 342 108 HOH HOH A . E 4 HOH 106 343 109 HOH HOH A . E 4 HOH 107 344 110 HOH HOH A . E 4 HOH 108 345 111 HOH HOH A . E 4 HOH 109 346 112 HOH HOH A . E 4 HOH 110 347 113 HOH HOH A . E 4 HOH 111 348 114 HOH HOH A . E 4 HOH 112 349 115 HOH HOH A . E 4 HOH 113 350 116 HOH HOH A . E 4 HOH 114 351 117 HOH HOH A . E 4 HOH 115 352 118 HOH HOH A . E 4 HOH 116 353 119 HOH HOH A . E 4 HOH 117 354 120 HOH HOH A . E 4 HOH 118 355 121 HOH HOH A . E 4 HOH 119 356 122 HOH HOH A . E 4 HOH 120 357 123 HOH HOH A . E 4 HOH 121 358 124 HOH HOH A . E 4 HOH 122 359 125 HOH HOH A . E 4 HOH 123 360 126 HOH HOH A . E 4 HOH 124 361 127 HOH HOH A . E 4 HOH 125 362 128 HOH HOH A . E 4 HOH 126 363 129 HOH HOH A . E 4 HOH 127 364 130 HOH HOH A . E 4 HOH 128 365 131 HOH HOH A . E 4 HOH 129 366 132 HOH HOH A . E 4 HOH 130 367 133 HOH HOH A . E 4 HOH 131 368 134 HOH HOH A . E 4 HOH 132 369 135 HOH HOH A . E 4 HOH 133 370 136 HOH HOH A . E 4 HOH 134 371 137 HOH HOH A . E 4 HOH 135 372 138 HOH HOH A . E 4 HOH 136 373 139 HOH HOH A . E 4 HOH 137 374 140 HOH HOH A . E 4 HOH 138 375 141 HOH HOH A . E 4 HOH 139 376 142 HOH HOH A . E 4 HOH 140 377 143 HOH HOH A . E 4 HOH 141 378 144 HOH HOH A . E 4 HOH 142 379 145 HOH HOH A . E 4 HOH 143 380 146 HOH HOH A . E 4 HOH 144 381 147 HOH HOH A . E 4 HOH 145 382 148 HOH HOH A . E 4 HOH 146 383 149 HOH HOH A . E 4 HOH 147 384 150 HOH HOH A . E 4 HOH 148 385 151 HOH HOH A . E 4 HOH 149 386 152 HOH HOH A . E 4 HOH 150 387 153 HOH HOH A . E 4 HOH 151 388 154 HOH HOH A . E 4 HOH 152 389 155 HOH HOH A . E 4 HOH 153 390 156 HOH HOH A . E 4 HOH 154 391 157 HOH HOH A . E 4 HOH 155 392 158 HOH HOH A . E 4 HOH 156 393 159 HOH HOH A . E 4 HOH 157 394 160 HOH HOH A . E 4 HOH 158 395 161 HOH HOH A . E 4 HOH 159 396 162 HOH HOH A . E 4 HOH 160 397 163 HOH HOH A . E 4 HOH 161 398 164 HOH HOH A . E 4 HOH 162 399 165 HOH HOH A . E 4 HOH 163 400 166 HOH HOH A . E 4 HOH 164 401 167 HOH HOH A . E 4 HOH 165 402 168 HOH HOH A . E 4 HOH 166 403 169 HOH HOH A . E 4 HOH 167 404 170 HOH HOH A . E 4 HOH 168 405 171 HOH HOH A . E 4 HOH 169 406 172 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 12 A MSE 11 ? MET SELENOMETHIONINE 2 A MSE 65 A MSE 64 ? MET SELENOMETHIONINE 3 A MSE 67 A MSE 66 ? MET SELENOMETHIONINE 4 A MSE 193 A MSE 192 ? MET SELENOMETHIONINE 5 A MSE 215 A MSE 214 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 2130 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 75.3105873119 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 70.0707567327 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 236 ? C CA . 2 1 A HOH 239 ? E HOH . 3 1 A HOH 250 ? E HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLN 21 ? A GLN 20 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 OD1 ? A ASP 22 ? A ASP 21 ? 1_555 78.8 ? 2 O ? A GLN 21 ? A GLN 20 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 OE1 ? A GLU 43 ? A GLU 42 ? 1_555 82.8 ? 3 OD1 ? A ASP 22 ? A ASP 21 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 OE1 ? A GLU 43 ? A GLU 42 ? 1_555 84.3 ? 4 O ? A GLN 21 ? A GLN 20 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 OE2 ? A GLU 43 ? A GLU 42 ? 1_555 110.0 ? 5 OD1 ? A ASP 22 ? A ASP 21 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 OE2 ? A GLU 43 ? A GLU 42 ? 1_555 133.3 ? 6 OE1 ? A GLU 43 ? A GLU 42 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 OE2 ? A GLU 43 ? A GLU 42 ? 1_555 53.3 ? 7 O ? A GLN 21 ? A GLN 20 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 246 ? 1_555 164.4 ? 8 OD1 ? A ASP 22 ? A ASP 21 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 246 ? 1_555 86.6 ? 9 OE1 ? A GLU 43 ? A GLU 42 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 246 ? 1_555 101.4 ? 10 OE2 ? A GLU 43 ? A GLU 42 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 246 ? 1_555 84.1 ? 11 O ? A GLN 21 ? A GLN 20 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 249 ? 1_555 79.2 ? 12 OD1 ? A ASP 22 ? A ASP 21 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 249 ? 1_555 148.6 ? 13 OE1 ? A GLU 43 ? A GLU 42 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 249 ? 1_555 114.7 ? 14 OE2 ? A GLU 43 ? A GLU 42 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 249 ? 1_555 75.7 ? 15 O ? E HOH . ? A HOH 246 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 249 ? 1_555 111.8 ? 16 O ? A GLN 21 ? A GLN 20 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 262 ? 1_555 88.7 ? 17 OD1 ? A ASP 22 ? A ASP 21 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 262 ? 1_555 79.0 ? 18 OE1 ? A GLU 43 ? A GLU 42 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 262 ? 1_555 162.5 ? 19 OE2 ? A GLU 43 ? A GLU 42 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 262 ? 1_555 144.2 ? 20 O ? E HOH . ? A HOH 246 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 262 ? 1_555 83.1 ? 21 O ? E HOH . ? A HOH 249 ? 1_555 CA ? B CA . ? A CA 235 ? 1_555 O ? E HOH . ? A HOH 262 ? 1_555 78.4 ? 22 O ? A ALA 37 ? A ALA 36 ? 1_555 CA ? C CA . ? A CA 236 ? 1_555 O ? E HOH . ? A HOH 239 ? 1_555 76.8 ? 23 O ? A ALA 37 ? A ALA 36 ? 1_555 CA ? C CA . ? A CA 236 ? 1_555 O ? E HOH . ? A HOH 242 ? 1_555 90.6 ? 24 O ? E HOH . ? A HOH 239 ? 1_555 CA ? C CA . ? A CA 236 ? 1_555 O ? E HOH . ? A HOH 242 ? 1_555 76.7 ? 25 O ? A ALA 37 ? A ALA 36 ? 1_555 CA ? C CA . ? A CA 236 ? 1_555 O ? E HOH . ? A HOH 270 ? 1_555 75.7 ? 26 O ? E HOH . ? A HOH 239 ? 1_555 CA ? C CA . ? A CA 236 ? 1_555 O ? E HOH . ? A HOH 270 ? 1_555 141.3 ? 27 O ? E HOH . ? A HOH 242 ? 1_555 CA ? C CA . ? A CA 236 ? 1_555 O ? E HOH . ? A HOH 270 ? 1_555 76.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_conn_type 8 5 'Structure model' struct_ref_seq_dif 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.value' 17 5 'Structure model' '_struct_conn.conn_type_id' 18 5 'Structure model' '_struct_conn.id' 19 5 'Structure model' '_struct_conn.pdbx_dist_value' 20 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 21 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 33 5 'Structure model' '_struct_conn_type.id' 34 5 'Structure model' '_struct_ref_seq_dif.details' 35 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 SHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # _pdbx_entry_details.entry_id 3BFM _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;REMARK 999 REMARK 999 SEQUENCE: THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 103 ? ? -156.27 76.35 2 1 GLU A 177 ? ? -93.08 38.04 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 28 ? CD ? A GLN 29 CD 2 1 Y 1 A GLN 28 ? OE1 ? A GLN 29 OE1 3 1 Y 1 A GLN 28 ? NE2 ? A GLN 29 NE2 4 1 Y 1 A GLU 133 ? CD ? A GLU 134 CD 5 1 Y 1 A GLU 133 ? OE1 ? A GLU 134 OE1 6 1 Y 1 A GLU 133 ? OE2 ? A GLU 134 OE2 7 1 Y 1 A GLU 138 ? CG ? A GLU 139 CG 8 1 Y 1 A GLU 138 ? CD ? A GLU 139 CD 9 1 Y 1 A GLU 138 ? OE1 ? A GLU 139 OE1 10 1 Y 1 A GLU 138 ? OE2 ? A GLU 139 OE2 11 1 Y 1 A ASP 152 ? CG ? A ASP 153 CG 12 1 Y 1 A ASP 152 ? OD1 ? A ASP 153 OD1 13 1 Y 1 A ASP 152 ? OD2 ? A ASP 153 OD2 14 1 Y 1 A GLU 179 ? CD ? A GLU 180 CD 15 1 Y 1 A GLU 179 ? OE1 ? A GLU 180 OE1 16 1 Y 1 A GLU 179 ? OE2 ? A GLU 180 OE2 17 1 Y 1 A GLU 210 ? CD ? A GLU 211 CD 18 1 Y 1 A GLU 210 ? OE1 ? A GLU 211 OE1 19 1 Y 1 A GLU 210 ? OE2 ? A GLU 211 OE2 20 1 Y 1 A GLN 233 ? CD ? A GLN 234 CD 21 1 Y 1 A GLN 233 ? OE1 ? A GLN 234 OE1 22 1 Y 1 A GLN 233 ? NE2 ? A GLN 234 NE2 23 1 N 1 A 2PE 237 ? O13 ? D 2PE 1 O13 24 1 N 1 A 2PE 237 ? C14 ? D 2PE 1 C14 25 1 N 1 A 2PE 237 ? C15 ? D 2PE 1 C15 26 1 N 1 A 2PE 237 ? O16 ? D 2PE 1 O16 27 1 N 1 A 2PE 237 ? C17 ? D 2PE 1 C17 28 1 N 1 A 2PE 237 ? C18 ? D 2PE 1 C18 29 1 N 1 A 2PE 237 ? O19 ? D 2PE 1 O19 30 1 N 1 A 2PE 237 ? C20 ? D 2PE 1 C20 31 1 N 1 A 2PE 237 ? C21 ? D 2PE 1 C21 32 1 N 1 A 2PE 237 ? O22 ? D 2PE 1 O22 33 1 N 1 A 2PE 237 ? C23 ? D 2PE 1 C23 34 1 N 1 A 2PE 237 ? C24 ? D 2PE 1 C24 35 1 N 1 A 2PE 237 ? O25 ? D 2PE 1 O25 36 1 N 1 A 2PE 237 ? C26 ? D 2PE 1 C26 37 1 N 1 A 2PE 237 ? C27 ? D 2PE 1 C27 38 1 N 1 A 2PE 237 ? O28 ? D 2PE 1 O28 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A SER 2 ? A SER 3 4 1 Y 1 A GLU 3 ? A GLU 4 5 1 Y 1 A ASP 234 ? A ASP 235 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'NONAETHYLENE GLYCOL' 2PE 4 water HOH #