HEADER STRUCTURAL PROTEIN/STRUCTURAL PROTEIN 23-NOV-07 3BFQ TITLE CRYSTAL STRUCTURE OF TRUNCATED FIMG (FIMGT) IN COMPLEX WITH THE DONOR TITLE 2 STRAND PEPTIDE OF FIMF (DSF) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FIMG; COMPND 3 CHAIN: G; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 36-167; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN FIMF; COMPND 8 CHAIN: F; COMPND 9 FRAGMENT: SEQUENCE DATABASE RESIDUES 23-37; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI STR. K12 SUBSTR.; SOURCE 3 ORGANISM_TAXID: 316407; SOURCE 4 STRAIN: W3110; SOURCE 5 GENE: FIMG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HM125; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRC99A VECTOR; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 14 ORGANISM_TAXID: 562 KEYWDS INCOMPLETE IG-LIKE FOLD, DONOR STRAND EXCHANGE, CELL PROJECTION, KEYWDS 2 FIMBRIUM, CELL ADHESION, STRUCTURAL PROTEIN-STRUCTURAL PROTEIN KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.EIDAM,G.CAPITANI,M.G.GRUTTER REVDAT 5 20-OCT-21 3BFQ 1 SOURCE REMARK SEQADV LINK REVDAT 4 13-JUL-11 3BFQ 1 VERSN REVDAT 3 24-FEB-09 3BFQ 1 VERSN REVDAT 2 22-APR-08 3BFQ 1 JRNL REVDAT 1 04-MAR-08 3BFQ 0 JRNL AUTH C.PUORGER,O.EIDAM,G.CAPITANI,D.ERILOV,M.G.GRUTTER, JRNL AUTH 2 R.GLOCKSHUBER JRNL TITL INFINITE KINETIC STABILITY AGAINST DISSOCIATION OF JRNL TITL 2 SUPRAMOLECULAR PROTEIN COMPLEXES THROUGH DONOR STRAND JRNL TITL 3 COMPLEMENTATION JRNL REF STRUCTURE V. 16 631 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18400183 JRNL DOI 10.1016/J.STR.2008.01.013 REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELX REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.132 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.132 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 985 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.125 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 20580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1081 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 11505 REMARK 3 NUMBER OF RESTRAINTS : 13930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 ANGLE DISTANCES (A) : 0.027 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.031 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.056 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.073 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90002 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25442 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 22.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS/HCL, PH 8.0, 80 MM NACL, REMARK 280 27.5% PEG 1500, 20 MM COBALT CHLORIDE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 12.25000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR G 75 CB - CG - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 GLN G 85 CB - CG - CD ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO G 1 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS G 45 NE2 REMARK 620 2 HOH G 253 O 89.3 REMARK 620 3 HOH G 254 O 177.7 91.7 REMARK 620 4 HOH G 284 O 89.0 176.2 90.1 REMARK 620 5 HOH G 285 O 89.8 89.4 92.3 87.2 REMARK 620 6 HOH G 286 O 92.5 89.8 85.4 93.7 177.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO G 1 DBREF 3BFQ G 13 144 UNP P08190 FIMG_ECOLI 36 167 DBREF 3BFQ F 1 15 UNP P08189 FIMF_ECOLI 23 37 SEQADV 3BFQ ARG F 15 UNP P08189 GLY 37 ENGINEERED MUTATION SEQRES 1 G 132 ALA LYS PRO CYS THR VAL SER THR THR ASN ALA THR VAL SEQRES 2 G 132 ASP LEU GLY ASP LEU TYR SER PHE SER LEU MET SER ALA SEQRES 3 G 132 GLY ALA ALA SER ALA TRP HIS ASP VAL ALA LEU GLU LEU SEQRES 4 G 132 THR ASN CYS PRO VAL GLY THR SER ARG VAL THR ALA SER SEQRES 5 G 132 PHE SER GLY ALA ALA ASP SER THR GLY TYR TYR LYS ASN SEQRES 6 G 132 GLN GLY THR ALA GLN ASN ILE GLN LEU GLU LEU GLN ASP SEQRES 7 G 132 ASP SER GLY ASN THR LEU ASN THR GLY ALA THR LYS THR SEQRES 8 G 132 VAL GLN VAL ASP ASP SER SER GLN SER ALA HIS PHE PRO SEQRES 9 G 132 LEU GLN VAL ARG ALA LEU THR VAL ASN GLY GLY ALA THR SEQRES 10 G 132 GLN GLY THR ILE GLN ALA VAL ILE SER ILE THR TYR THR SEQRES 11 G 132 TYR SER SEQRES 1 F 15 ALA ASP SER THR ILE THR ILE ARG GLY TYR VAL ARG ASP SEQRES 2 F 15 ASN ARG HET CO G 1 1 HETNAM CO COBALT (II) ION FORMUL 3 CO CO 2+ FORMUL 4 HOH *172(H2 O) HELIX 1 1 PHE G 33 MET G 36 5 4 SHEET 1 A 5 THR G 17 VAL G 18 0 SHEET 2 A 5 HIS G 45 THR G 52 -1 O THR G 52 N THR G 17 SHEET 3 A 5 ALA G 113 LEU G 122 -1 O ALA G 113 N LEU G 51 SHEET 4 A 5 GLN G 85 ASP G 90 -1 N GLN G 85 O LEU G 122 SHEET 5 A 5 TYR G 75 LYS G 76 -1 N TYR G 75 O LEU G 86 SHEET 1 B 5 ASN G 22 TYR G 31 0 SHEET 2 B 5 SER F 3 ARG F 12 1 O THR F 6 N VAL G 25 SHEET 3 B 5 GLY G 131 SER G 144 -1 N GLY G 131 O VAL F 11 SHEET 4 B 5 ARG G 60 SER G 66 -1 N THR G 62 O THR G 142 SHEET 5 B 5 THR G 101 GLN G 105 -1 O LYS G 102 N ALA G 63 SSBOND 1 CYS G 16 CYS G 54 1555 1555 2.06 LINK CO CO G 1 NE2 HIS G 45 1555 1555 2.08 LINK CO CO G 1 O HOH G 253 1555 1555 2.18 LINK CO CO G 1 O HOH G 254 1555 1555 2.14 LINK CO CO G 1 O HOH G 284 1555 1555 1.84 LINK CO CO G 1 O HOH G 285 1555 1555 2.09 LINK CO CO G 1 O HOH G 286 1555 1555 1.98 SITE 1 AC1 1 HIS G 45 CRYST1 48.050 24.500 54.150 90.00 113.77 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020812 0.000000 0.009166 0.00000 SCALE2 0.000000 0.040816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020179 0.00000