HEADER HORMONE/GROWTH FACTOR 05-DEC-07 3BK3 TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF BMP-2 AND THE FIRST VON WILLEBRAND TITLE 2 DOMAIN TYPE C OF CROSSVEINLESS-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BONE MORPHOGENETIC PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BMP-2, BMP-2A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CROSSVEINLESS 2; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: VWC1 CV-2, VWC DOMAIN 1, UNP RESIDUES 28-93; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: BMP2, BMP2A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PN25C109; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 11 ORGANISM_COMMON: ZEBRAFISH; SOURCE 12 GENE: CROSSVEINLESS-2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS TGF-BETA SUPERFAMILY, BMP MODULATOR PROTEINS, CHORDIN, BMP INHIBITOR, KEYWDS 2 CHONDROGENESIS, CLEAVAGE ON PAIR OF BASIC RESIDUES, CYTOKINE, KEYWDS 3 DEVELOPMENTAL PROTEIN, DIFFERENTIATION, GLYCOPROTEIN, GROWTH FACTOR, KEYWDS 4 OSTEOGENESIS, POLYMORPHISM, SECRETED, HORMONE-GROWTH FACTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.D.MUELLER,W.SEBALD,J.-L.ZHANG REVDAT 3 10-NOV-21 3BK3 1 SEQADV REVDAT 2 24-FEB-09 3BK3 1 VERSN REVDAT 1 27-MAY-08 3BK3 0 JRNL AUTH J.-L.ZHANG,L.-Y.QIU,A.KOTZSCH,S.WEIDAUER,L.PATTERSON, JRNL AUTH 2 M.HAMMERSCHMIDT,W.SEBALD,T.D.MUELLER JRNL TITL CRYSTAL STRUCTURE ANALYSIS REVEALS HOW THE CHORDIN FAMILY JRNL TITL 2 MEMBER CROSSVEINLESS 2 BLOCKS BMP-2 RECEPTOR BINDING JRNL REF DEV.CELL V. 14 739 2008 JRNL REFN ISSN 1534-5807 JRNL PMID 18477456 JRNL DOI 10.1016/J.DEVCEL.2008.02.017 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 5.0 REMARK 3 NUMBER OF REFLECTIONS : 13191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 652 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9799, 0.9796, 0.9079 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34200 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AMMONIUM PHOSPHATE, 0.1M TRIS PH REMARK 280 7.5, 8% GLYCEROL, 5% SUCROSE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.87500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 41.87500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.92500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.87500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.96250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.87500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.88750 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.87500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.87500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.92500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 41.87500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 104.88750 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 41.87500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 34.96250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -41.87500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 34.96250 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 9 REMARK 465 LEU A 10 REMARK 465 GLN B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 HIS B 4 REMARK 465 LYS B 5 REMARK 465 GLN B 6 REMARK 465 ARG B 7 REMARK 465 LYS B 8 REMARK 465 ARG B 9 REMARK 465 LEU B 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LYS C 39 CG CD CE NZ REMARK 470 LYS D 39 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 66 CA - CB - CG ANGL. DEV. = -15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 41 170.01 55.25 REMARK 500 GLU A 94 -62.86 -21.78 REMARK 500 GLU A 96 11.73 81.39 REMARK 500 MET B 41 168.14 56.22 REMARK 500 MET B 91 -161.06 -107.89 REMARK 500 GLU B 94 -9.80 -57.60 REMARK 500 LEU C 1 -78.69 33.00 REMARK 500 ASN C 20 -12.85 87.60 REMARK 500 ASN C 33 41.00 71.02 REMARK 500 ALA C 47 119.95 -37.57 REMARK 500 ASN D 20 -9.59 83.83 REMARK 500 ILE D 21 -62.15 -101.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1REW RELATED DB: PDB REMARK 900 HIGH-RESOLUTION STRUCTURE OF THE BINARY COMPLEX OF BMP-2 BOUND TO REMARK 900 ITS HIGH-AFFINITY TYPE I RECEPTOR BMPR-IA REMARK 900 RELATED ID: 2H62 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TERNARY LIGAND-RECEPTOR COMPLEX OF BMP-2 REMARK 900 RELATED ID: 2H64 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TERNARY LIGAND-RECEPTOR COMPLEX OF BMP-2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS COORDINATES IN CHAINS C AND D ARE USED NON-SEQUENTIAL REMARK 999 RESIDUE NUMBERING. SINCE RESIDUE -1 IS A EXPRESSION TAG, IT REMARK 999 HAS BEEN GIVEN A NEGATIVE NUMBER. 0(ZERO) WAS SIMPLY SKIPPED REMARK 999 IN THE NUMBERING. DBREF 3BK3 A 1 114 UNP P12643 BMP2_HUMAN 283 396 DBREF 3BK3 B 1 114 UNP P12643 BMP2_HUMAN 283 396 DBREF 3BK3 C 1 66 UNP Q5D734 Q5D734_DANRE 28 93 DBREF 3BK3 D 1 66 UNP Q5D734 Q5D734_DANRE 28 93 SEQADV 3BK3 MET A 41 UNP P12643 PHE 323 ENGINEERED MUTATION SEQADV 3BK3 MET A 91 UNP P12643 TYR 373 ENGINEERED MUTATION SEQADV 3BK3 MET B 41 UNP P12643 PHE 323 ENGINEERED MUTATION SEQADV 3BK3 MET B 91 UNP P12643 TYR 373 ENGINEERED MUTATION SEQADV 3BK3 TRP C -1 UNP Q5D734 EXPRESSION TAG SEQADV 3BK3 TRP D -1 UNP Q5D734 EXPRESSION TAG SEQRES 1 A 114 GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SER SER SEQRES 2 A 114 CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER ASP VAL SEQRES 3 A 114 GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY TYR HIS SEQRES 4 A 114 ALA MET TYR CYS HIS GLY GLU CYS PRO PHE PRO LEU ALA SEQRES 5 A 114 ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL GLN THR SEQRES 6 A 114 LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS ALA CYS SEQRES 7 A 114 CYS VAL PRO THR GLU LEU SER ALA ILE SER MET LEU MET SEQRES 8 A 114 LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN TYR GLN SEQRES 9 A 114 ASP MET VAL VAL GLU GLY CYS GLY CYS ARG SEQRES 1 B 114 GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SER SER SEQRES 2 B 114 CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER ASP VAL SEQRES 3 B 114 GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY TYR HIS SEQRES 4 B 114 ALA MET TYR CYS HIS GLY GLU CYS PRO PHE PRO LEU ALA SEQRES 5 B 114 ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL GLN THR SEQRES 6 B 114 LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS ALA CYS SEQRES 7 B 114 CYS VAL PRO THR GLU LEU SER ALA ILE SER MET LEU MET SEQRES 8 B 114 LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN TYR GLN SEQRES 9 B 114 ASP MET VAL VAL GLU GLY CYS GLY CYS ARG SEQRES 1 C 67 TRP LEU ILE THR GLY THR GLU ALA SER CYS GLU ASN GLU SEQRES 2 C 67 GLY GLU VAL LEU HIS ILE PRO ASN ILE THR ASP ASN PRO SEQRES 3 C 67 CYS ILE SER CYS VAL CYS LEU ASN GLN LYS ALA GLU CYS SEQRES 4 C 67 LYS GLN GLU LYS CYS ALA PRO LEU ALA GLU ASP CYS ALA SEQRES 5 C 67 LEU VAL VAL LYS GLN THR GLY ALA CYS CYS GLU LYS CYS SEQRES 6 C 67 LYS GLY SEQRES 1 D 67 TRP LEU ILE THR GLY THR GLU ALA SER CYS GLU ASN GLU SEQRES 2 D 67 GLY GLU VAL LEU HIS ILE PRO ASN ILE THR ASP ASN PRO SEQRES 3 D 67 CYS ILE SER CYS VAL CYS LEU ASN GLN LYS ALA GLU CYS SEQRES 4 D 67 LYS GLN GLU LYS CYS ALA PRO LEU ALA GLU ASP CYS ALA SEQRES 5 D 67 LEU VAL VAL LYS GLN THR GLY ALA CYS CYS GLU LYS CYS SEQRES 6 D 67 LYS GLY FORMUL 5 HOH *47(H2 O) HELIX 1 1 PHE A 23 GLY A 27 1 5 HELIX 2 2 THR A 58 ASN A 71 1 14 HELIX 3 3 THR B 58 SER B 69 1 12 SHEET 1 A 2 LYS A 15 HIS A 17 0 SHEET 2 A 2 TYR A 42 HIS A 44 -1 O TYR A 42 N HIS A 17 SHEET 1 B 2 TYR A 20 ASP A 22 0 SHEET 2 B 2 GLY A 37 HIS A 39 -1 O TYR A 38 N VAL A 21 SHEET 1 C 4 ILE A 32 ALA A 34 0 SHEET 2 C 4 CYS A 78 LEU A 92 -1 O LEU A 90 N ALA A 34 SHEET 3 C 4 VAL A 98 ARG A 114 -1 O GLY A 110 N THR A 82 SHEET 4 C 4 THR C 5 GLU C 6 -1 O THR C 5 N ASN A 102 SHEET 1 D 2 LYS B 15 HIS B 17 0 SHEET 2 D 2 TYR B 42 HIS B 44 -1 O TYR B 42 N HIS B 17 SHEET 1 E 2 TYR B 20 ASP B 22 0 SHEET 2 E 2 GLY B 37 HIS B 39 -1 O TYR B 38 N VAL B 21 SHEET 1 F 4 ILE B 32 ALA B 34 0 SHEET 2 F 4 CYS B 78 LEU B 92 -1 O LEU B 90 N ALA B 34 SHEET 3 F 4 VAL B 98 ARG B 114 -1 O GLY B 110 N THR B 82 SHEET 4 F 4 GLY D 4 GLU D 6 -1 O THR D 5 N ASN B 102 SHEET 1 G 3 VAL C 15 LEU C 16 0 SHEET 2 G 3 ILE C 27 CYS C 31 -1 O CYS C 29 N LEU C 16 SHEET 3 G 3 ALA C 36 GLN C 40 -1 O GLU C 37 N VAL C 30 SHEET 1 H 2 LEU C 52 VAL C 54 0 SHEET 2 H 2 LYS C 63 GLY C 66 -1 O LYS C 63 N VAL C 54 SHEET 1 I 3 VAL D 15 LEU D 16 0 SHEET 2 I 3 ILE D 27 CYS D 31 -1 O CYS D 29 N LEU D 16 SHEET 3 I 3 ALA D 36 GLN D 40 -1 O LYS D 39 N SER D 28 SHEET 1 J 2 LEU D 52 VAL D 54 0 SHEET 2 J 2 LYS D 63 GLY D 66 -1 O LYS D 65 N LEU D 52 SSBOND 1 CYS A 14 CYS A 79 1555 1555 2.03 SSBOND 2 CYS A 43 CYS A 111 1555 1555 2.04 SSBOND 3 CYS A 47 CYS A 113 1555 1555 2.05 SSBOND 4 CYS A 78 CYS B 78 1555 1555 2.03 SSBOND 5 CYS B 14 CYS B 79 1555 1555 2.03 SSBOND 6 CYS B 43 CYS B 111 1555 1555 2.04 SSBOND 7 CYS B 47 CYS B 113 1555 1555 2.05 SSBOND 8 CYS C 9 CYS C 31 1555 1555 2.04 SSBOND 9 CYS C 26 CYS C 60 1555 1555 2.04 SSBOND 10 CYS C 29 CYS C 38 1555 1555 2.03 SSBOND 11 CYS C 43 CYS C 61 1555 1555 2.03 SSBOND 12 CYS C 50 CYS C 64 1555 1555 2.05 SSBOND 13 CYS D 9 CYS D 31 1555 1555 2.05 SSBOND 14 CYS D 26 CYS D 60 1555 1555 2.04 SSBOND 15 CYS D 29 CYS D 38 1555 1555 2.04 SSBOND 16 CYS D 43 CYS D 61 1555 1555 2.03 SSBOND 17 CYS D 50 CYS D 64 1555 1555 2.06 CISPEP 1 ALA A 34 PRO A 35 0 3.24 CISPEP 2 PHE A 49 PRO A 50 0 -0.70 CISPEP 3 ALA B 34 PRO B 35 0 -5.56 CISPEP 4 PHE B 49 PRO B 50 0 3.10 CRYST1 83.750 83.750 139.850 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011940 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007151 0.00000