HEADER TRANSFERASE 06-DEC-07 3BKB TITLE CRYSTAL STRUCTURE OF HUMAN FELINE SARCOMA VIRAL ONCOGENE HOMOLOGUE (V- TITLE 2 FES) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FES/FPS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 448-822; COMPND 5 SYNONYM: C-FES; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FES, FPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)(R3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS FES, V-FES, FUJINAMI, AVIAN SARCOMA, VIRAL, ONCOGENE, FELINE SARCOMA KEYWDS 2 VIRUS, SGC, STRUCTURAL GENOMICS CONSORTIUM, ATP-BINDING, KINASE, KEYWDS 3 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTO-ONCOGENE, SH2 DOMAIN, KEYWDS 4 TRANSFERASE, TYROSINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,E.SALAH,O.FEDOROV,C.COOPER,E.UGOCHUKWU,A.C.W.PIKE, AUTHOR 2 F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,S.KNAPP,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 3BKB 1 REMARK SEQADV REVDAT 4 13-JUL-11 3BKB 1 VERSN REVDAT 3 24-FEB-09 3BKB 1 VERSN REVDAT 2 16-SEP-08 3BKB 1 JRNL REVDAT 1 25-DEC-07 3BKB 0 JRNL AUTH P.FILIPPAKOPOULOS,M.KOFLER,O.HANTSCHEL,G.D.GISH,F.GREBIEN, JRNL AUTH 2 E.SALAH,P.NEUDECKER,L.E.KAY,B.E.TURK,G.SUPERTI-FURGA, JRNL AUTH 3 T.PAWSON,S.KNAPP JRNL TITL STRUCTURAL COUPLING OF SH2-KINASE DOMAINS LINKS FES AND ABL JRNL TITL 2 SUBSTRATE RECOGNITION AND KINASE ACTIVATION JRNL REF CELL(CAMBRIDGE,MASS.) V. 134 793 2008 JRNL REFN ISSN 0092-8674 JRNL PMID 18775312 JRNL DOI 10.1016/J.CELL.2008.07.047 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2312 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3209 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2927 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.693 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.016 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; 0.001 ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.532 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; 1.118 ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 5.941 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;33.042 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ;12.098 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ;12.284 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.105 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.006 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; 0.001 ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; 0.204 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; 0.202 ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; 0.177 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; 0.085 ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; 0.158 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; 0.078 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; 0.265 ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; 0.178 ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; 3.545 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; 0.942 ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 449 A 550 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8640 34.2910 20.5380 REMARK 3 T TENSOR REMARK 3 T11: -0.0950 T22: -0.0732 REMARK 3 T33: -0.0658 T12: 0.0010 REMARK 3 T13: -0.0469 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.8256 L22: 1.6921 REMARK 3 L33: 5.3905 L12: 0.4588 REMARK 3 L13: 0.3504 L23: 0.3646 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.0400 S13: -0.0305 REMARK 3 S21: -0.0194 S22: -0.1026 S23: -0.0684 REMARK 3 S31: 0.1125 S32: -0.0302 S33: 0.0962 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 551 A 650 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0510 31.0950 48.8260 REMARK 3 T TENSOR REMARK 3 T11: -0.1552 T22: -0.1260 REMARK 3 T33: -0.0569 T12: 0.0012 REMARK 3 T13: -0.0112 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.4802 L22: 1.0903 REMARK 3 L33: 1.0345 L12: 0.2066 REMARK 3 L13: 0.0380 L23: -0.0073 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: 0.0239 S13: 0.0464 REMARK 3 S21: -0.0741 S22: 0.0342 S23: 0.1087 REMARK 3 S31: -0.0867 S32: -0.0156 S33: 0.0199 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 651 A 821 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0430 12.4610 62.1680 REMARK 3 T TENSOR REMARK 3 T11: -0.1380 T22: -0.1468 REMARK 3 T33: -0.0661 T12: -0.0140 REMARK 3 T13: 0.0196 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.1786 L22: 1.4201 REMARK 3 L33: 1.0393 L12: -0.3829 REMARK 3 L13: -0.2793 L23: 0.1588 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: -0.0941 S13: -0.1091 REMARK 3 S21: 0.1600 S22: -0.0132 S23: 0.1387 REMARK 3 S31: 0.0964 S32: -0.0233 S33: 0.0333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98074 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 43.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : 0.12800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : 0.78700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: AN ENSEMBLE OF THREE KINASE DOMAINS FROM THE PDB REMARK 200 ENTRIES 2HYY, 2G2I, 2G2H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA2SO4, 0.1M BIS-TRIS-PROPANE, REMARK 280 20% PEG 3350, 10% ETHYLENE GLYCOL, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.70550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.70550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.70550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 1 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO4 A 1 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 446 REMARK 465 MET A 447 REMARK 465 ILE A 448 REMARK 465 ARG A 822 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 472 CD OE1 OE2 REMARK 470 GLN A 486 CG CD OE1 NE2 REMARK 470 LYS A 488 CG CD CE NZ REMARK 470 GLN A 489 CG CD OE1 NE2 REMARK 470 GLU A 490 CG CD OE1 OE2 REMARK 470 LYS A 539 CE NZ REMARK 470 LYS A 540 CE NZ REMARK 470 GLU A 565 CD OE1 OE2 REMARK 470 GLU A 594 CG CD OE1 OE2 REMARK 470 LYS A 629 NZ REMARK 470 ARG A 656 NE CZ NH1 NH2 REMARK 470 GLN A 662 CD OE1 NE2 REMARK 470 GLU A 693 OE1 OE2 REMARK 470 ARG A 720 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 795 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1184 O HOH A 1194 2.17 REMARK 500 O HOH A 945 O HOH A 1055 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 682 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 682 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 515 -91.60 -109.41 REMARK 500 ARG A 682 -9.40 76.66 REMARK 500 ASP A 701 71.71 38.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 823 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 824 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 825 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STU A 826 DBREF 3BKB A 448 822 UNP P07332 FES_HUMAN 448 822 SEQADV 3BKB SER A 446 UNP P07332 EXPRESSION TAG SEQADV 3BKB MET A 447 UNP P07332 EXPRESSION TAG SEQRES 1 A 377 SER MET ILE PRO GLU VAL GLN LYS PRO LEU HIS GLU GLN SEQRES 2 A 377 LEU TRP TYR HIS GLY ALA ILE PRO ARG ALA GLU VAL ALA SEQRES 3 A 377 GLU LEU LEU VAL HIS SER GLY ASP PHE LEU VAL ARG GLU SEQRES 4 A 377 SER GLN GLY LYS GLN GLU TYR VAL LEU SER VAL LEU TRP SEQRES 5 A 377 ASP GLY LEU PRO ARG HIS PHE ILE ILE GLN SER LEU ASP SEQRES 6 A 377 ASN LEU TYR ARG LEU GLU GLY GLU GLY PHE PRO SER ILE SEQRES 7 A 377 PRO LEU LEU ILE ASP HIS LEU LEU SER THR GLN GLN PRO SEQRES 8 A 377 LEU THR LYS LYS SER GLY VAL VAL LEU HIS ARG ALA VAL SEQRES 9 A 377 PRO LYS ASP LYS TRP VAL LEU ASN HIS GLU ASP LEU VAL SEQRES 10 A 377 LEU GLY GLU GLN ILE GLY ARG GLY ASN PHE GLY GLU VAL SEQRES 11 A 377 PHE SER GLY ARG LEU ARG ALA ASP ASN THR LEU VAL ALA SEQRES 12 A 377 VAL LYS SER CYS ARG GLU THR LEU PRO PRO ASP LEU LYS SEQRES 13 A 377 ALA LYS PHE LEU GLN GLU ALA ARG ILE LEU LYS GLN TYR SEQRES 14 A 377 SER HIS PRO ASN ILE VAL ARG LEU ILE GLY VAL CYS THR SEQRES 15 A 377 GLN LYS GLN PRO ILE TYR ILE VAL MET GLU LEU VAL GLN SEQRES 16 A 377 GLY GLY ASP PHE LEU THR PHE LEU ARG THR GLU GLY ALA SEQRES 17 A 377 ARG LEU ARG VAL LYS THR LEU LEU GLN MET VAL GLY ASP SEQRES 18 A 377 ALA ALA ALA GLY MET GLU TYR LEU GLU SER LYS CYS CYS SEQRES 19 A 377 ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL THR SEQRES 20 A 377 GLU LYS ASN VAL LEU LYS ILE SER ASP PHE GLY MET SER SEQRES 21 A 377 ARG GLU GLU ALA ASP GLY VAL TYR ALA ALA SER GLY GLY SEQRES 22 A 377 LEU ARG GLN VAL PRO VAL LYS TRP THR ALA PRO GLU ALA SEQRES 23 A 377 LEU ASN TYR GLY ARG TYR SER SER GLU SER ASP VAL TRP SEQRES 24 A 377 SER PHE GLY ILE LEU LEU TRP GLU THR PHE SER LEU GLY SEQRES 25 A 377 ALA SER PRO TYR PRO ASN LEU SER ASN GLN GLN THR ARG SEQRES 26 A 377 GLU PHE VAL GLU LYS GLY GLY ARG LEU PRO CYS PRO GLU SEQRES 27 A 377 LEU CYS PRO ASP ALA VAL PHE ARG LEU MET GLU GLN CYS SEQRES 28 A 377 TRP ALA TYR GLU PRO GLY GLN ARG PRO SER PHE SER THR SEQRES 29 A 377 ILE TYR GLN GLU LEU GLN SER ILE ARG LYS ARG HIS ARG HET SO4 A 1 5 HET SO4 A 2 5 HET SO4 A 3 5 HET EDO A 823 4 HET EDO A 824 4 HET EDO A 825 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO A 7 4 HET EDO A 8 4 HET STU A 826 35 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM STU STAUROSPORINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 EDO 8(C2 H6 O2) FORMUL 13 STU C28 H26 N4 O3 FORMUL 14 HOH *388(H2 O) HELIX 1 1 PRO A 449 LYS A 453 5 5 HELIX 2 2 PRO A 454 GLN A 458 5 5 HELIX 3 3 PRO A 466 LEU A 474 1 9 HELIX 4 4 SER A 522 GLN A 534 1 13 HELIX 5 5 ASN A 557 GLU A 559 5 3 HELIX 6 6 PRO A 597 ALA A 602 1 6 HELIX 7 7 LEU A 605 LYS A 612 1 8 HELIX 8 8 ASP A 643 GLY A 652 1 10 HELIX 9 9 ALA A 653 LEU A 655 5 3 HELIX 10 10 ARG A 656 LYS A 677 1 22 HELIX 11 11 ALA A 685 ARG A 687 5 3 HELIX 12 12 PRO A 723 THR A 727 5 5 HELIX 13 13 ALA A 728 GLY A 735 1 8 HELIX 14 14 SER A 739 SER A 755 1 17 HELIX 15 15 SER A 765 LYS A 775 1 11 HELIX 16 16 PRO A 786 TRP A 797 1 12 HELIX 17 17 GLU A 800 ARG A 804 5 5 HELIX 18 18 SER A 806 ARG A 820 1 15 SHEET 1 A 4 LEU A 500 ILE A 505 0 SHEET 2 A 4 GLU A 490 TRP A 497 -1 N LEU A 493 O PHE A 504 SHEET 3 A 4 ASP A 479 SER A 485 -1 N SER A 485 O GLU A 490 SHEET 4 A 4 ARG A 547 ALA A 548 1 O ARG A 547 N PHE A 480 SHEET 1 B 2 GLN A 507 LEU A 509 0 SHEET 2 B 2 LEU A 512 ARG A 514 -1 O ARG A 514 N GLN A 507 SHEET 1 C 5 LEU A 561 ARG A 569 0 SHEET 2 C 5 GLU A 574 LEU A 580 -1 O SER A 577 N GLY A 564 SHEET 3 C 5 LEU A 586 LYS A 590 -1 O VAL A 589 N PHE A 576 SHEET 4 C 5 TYR A 633 GLU A 637 -1 O MET A 636 N ALA A 588 SHEET 5 C 5 LEU A 622 CYS A 626 -1 N GLY A 624 O VAL A 635 SHEET 1 D 2 CYS A 679 ILE A 680 0 SHEET 2 D 2 ARG A 706 GLU A 707 -1 O ARG A 706 N ILE A 680 SHEET 1 E 2 CYS A 689 VAL A 691 0 SHEET 2 E 2 LEU A 697 ILE A 699 -1 O LYS A 698 N LEU A 690 SHEET 1 F 2 VAL A 712 ALA A 714 0 SHEET 2 F 2 ARG A 736 SER A 738 -1 O TYR A 737 N TYR A 713 CISPEP 1 GLN A 630 PRO A 631 0 -0.50 SITE 1 AC1 3 ARG A 579 ARG A 581 HOH A 964 SITE 1 AC2 4 EDO A 8 ARG A 467 ARG A 483 SER A 485 SITE 1 AC3 9 LYS A 603 ARG A 682 ARG A 706 TYR A 713 SITE 2 AC3 9 ALA A 715 SER A 716 LEU A 719 HOH A1113 SITE 3 AC3 9 HOH A1178 SITE 1 AC4 2 ARG A 609 LYS A 612 SITE 1 AC5 6 VAL A 724 THR A 727 PRO A 729 TRP A 744 SITE 2 AC5 6 THR A 769 HOH A 840 SITE 1 AC6 10 ASP A 683 ALA A 685 ARG A 687 ASN A 688 SITE 2 AC6 10 PRO A 723 TRP A 726 HOH A 832 HOH A 849 SITE 3 AC6 10 HOH A 899 HOH A 982 SITE 1 AC7 6 GLU A 518 ARG A 649 SER A 759 HOH A 880 SITE 2 AC7 6 HOH A1105 HOH A1148 SITE 1 AC8 5 HIS A 558 LEU A 561 TYR A 633 HOH A1097 SITE 2 AC8 5 HOH A1189 SITE 1 AC9 5 ASP A 510 TRP A 751 HOH A1002 HOH A1112 SITE 2 AC9 5 HOH A1204 SITE 1 BC1 2 GLN A 640 HOH A1055 SITE 1 BC2 5 SO4 A 2 ARG A 467 SER A 485 VAL A 492 SITE 2 BC2 5 HIS A 503 SITE 1 BC3 14 ILE A 567 GLY A 568 ARG A 569 ALA A 588 SITE 2 BC3 14 GLU A 607 GLU A 637 LEU A 638 VAL A 639 SITE 3 BC3 14 GLY A 642 ARG A 687 LEU A 690 SER A 700 SITE 4 BC3 14 ASP A 701 HOH A1183 CRYST1 80.404 80.404 131.411 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012437 0.007181 0.000000 0.00000 SCALE2 0.000000 0.014361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007610 0.00000