data_3BKD # _entry.id 3BKD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BKD pdb_00003bkd 10.2210/pdb3bkd/pdb RCSB RCSB045627 ? ? WWPDB D_1000045627 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-07-29 4 'Structure model' 1 3 2024-04-03 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Refinement description' 10 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' database_PDB_caveat 3 3 'Structure model' entity 4 3 'Structure model' pdbx_chem_comp_identifier 5 3 'Structure model' pdbx_entity_nonpoly 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site 8 3 'Structure model' struct_site_gen 9 4 'Structure model' chem_comp 10 4 'Structure model' chem_comp_atom 11 4 'Structure model' chem_comp_bond 12 4 'Structure model' database_2 13 4 'Structure model' pdbx_initial_refinement_model 14 4 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.mon_nstd_flag' 2 3 'Structure model' '_chem_comp.name' 3 3 'Structure model' '_chem_comp.type' 4 3 'Structure model' '_entity.pdbx_description' 5 3 'Structure model' '_pdbx_entity_nonpoly.name' 6 3 'Structure model' '_struct_conn.pdbx_dist_value' 7 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 20 4 'Structure model' '_chem_comp.pdbx_synonyms' 21 4 'Structure model' '_database_2.pdbx_DOI' 22 4 'Structure model' '_database_2.pdbx_database_accession' 23 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 24 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 25 4 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'BOG A 302 HAS WRONG CHIRALITY AT ATOM C1' 2 'BOG A 302 HAS WRONG CHIRALITY AT ATOM C2' 3 'BOG A 302 HAS WRONG CHIRALITY AT ATOM C4' 4 'BOG A 302 HAS WRONG CHIRALITY AT ATOM C5' 5 'BOG B 301 HAS WRONG CHIRALITY AT ATOM C1' 6 'BOG B 301 HAS WRONG CHIRALITY AT ATOM C2' 7 'BOG B 301 HAS WRONG CHIRALITY AT ATOM C4' 8 'BOG B 301 HAS WRONG CHIRALITY AT ATOM C5' 9 'BOG C 303 HAS WRONG CHIRALITY AT ATOM C1' 10 'BOG C 303 HAS WRONG CHIRALITY AT ATOM C2' 11 'BOG C 303 HAS WRONG CHIRALITY AT ATOM C4' 12 'BOG C 303 HAS WRONG CHIRALITY AT ATOM C5' 13 'BOG E 702 HAS WRONG CHIRALITY AT ATOM C1' 14 'BOG E 702 HAS WRONG CHIRALITY AT ATOM C2' 15 'BOG E 702 HAS WRONG CHIRALITY AT ATOM C4' 16 'BOG E 702 HAS WRONG CHIRALITY AT ATOM C5' 17 'BOG G 701 HAS WRONG CHIRALITY AT ATOM C1' 18 'BOG G 701 HAS WRONG CHIRALITY AT ATOM C2' 19 'BOG G 701 HAS WRONG CHIRALITY AT ATOM C4' 20 'BOG G 701 HAS WRONG CHIRALITY AT ATOM C5' 21 'BOG G 703 HAS WRONG CHIRALITY AT ATOM C1' 22 'BOG G 703 HAS WRONG CHIRALITY AT ATOM C2' 23 'BOG G 703 HAS WRONG CHIRALITY AT ATOM C4' 24 'BOG G 703 HAS WRONG CHIRALITY AT ATOM C5' # _pdbx_database_status.entry_id 3BKD _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-06 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stouffer, A.L.' 1 'Acharya, R.' 2 'Salom, D.' 3 # _citation.id primary _citation.title 'Structural basis for the function and inhibition of an influenza virus proton channel' _citation.journal_abbrev Nature _citation.journal_volume 451 _citation.page_first 596 _citation.page_last 599 _citation.year 2008 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18235504 _citation.pdbx_database_id_DOI 10.1038/nature06528 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stouffer, A.L.' 1 ? primary 'Acharya, R.' 2 ? primary 'Salom, D.' 3 ? primary 'Levine, A.S.' 4 ? primary 'Di Costanzo, L.' 5 ? primary 'Soto, C.S.' 6 ? primary 'Tereshko, V.' 7 ? primary 'Nanda, V.' 8 ? primary 'Stayrook, S.' 9 ? primary 'DeGrado, W.F.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Transmembrane Domain of Matrix protein M2' 2793.236 8 ? ? 'residues 22-46' ? 2 non-polymer man 'octyl beta-D-glucopyranoside' 292.369 6 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 6 ? ? ? ? 5 water nat water 18.015 39 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'SSDPLVVAASI(MSE)GILHLILWILDRL(NH2)' _entity_poly.pdbx_seq_one_letter_code_can SSDPLVVAASIMGILHLILWILDRLX _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'octyl beta-D-glucopyranoside' BOG 3 'CHLORIDE ION' CL 4 'DI(HYDROXYETHYL)ETHER' PEG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 ASP n 1 4 PRO n 1 5 LEU n 1 6 VAL n 1 7 VAL n 1 8 ALA n 1 9 ALA n 1 10 SER n 1 11 ILE n 1 12 MSE n 1 13 GLY n 1 14 ILE n 1 15 LEU n 1 16 HIS n 1 17 LEU n 1 18 ILE n 1 19 LEU n 1 20 TRP n 1 21 ILE n 1 22 LEU n 1 23 ASP n 1 24 ARG n 1 25 LEU n 1 26 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized; Transmembrane domain of M2 protein from Influenza A virus' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BOG D-saccharide n 'octyl beta-D-glucopyranoside' 'Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside' 'C14 H28 O6' 292.369 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-octylglucoside # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 22 22 SER SER A . n A 1 2 SER 2 23 23 SER SER A . n A 1 3 ASP 3 24 24 ASP ASP A . n A 1 4 PRO 4 25 25 PRO PRO A . n A 1 5 LEU 5 26 26 LEU LEU A . n A 1 6 VAL 6 27 27 VAL VAL A . n A 1 7 VAL 7 28 28 VAL VAL A . n A 1 8 ALA 8 29 29 ALA ALA A . n A 1 9 ALA 9 30 30 ALA ALA A . n A 1 10 SER 10 31 31 SER SER A . n A 1 11 ILE 11 32 32 ILE ILE A . n A 1 12 MSE 12 33 33 MSE MSE A . n A 1 13 GLY 13 34 34 GLY GLY A . n A 1 14 ILE 14 35 35 ILE ILE A . n A 1 15 LEU 15 36 36 LEU LEU A . n A 1 16 HIS 16 37 37 HIS HIS A . n A 1 17 LEU 17 38 38 LEU LEU A . n A 1 18 ILE 18 39 39 ILE ILE A . n A 1 19 LEU 19 40 40 LEU LEU A . n A 1 20 TRP 20 41 41 TRP TRP A . n A 1 21 ILE 21 42 42 ILE ILE A . n A 1 22 LEU 22 43 43 LEU LEU A . n A 1 23 ASP 23 44 44 ASP ASP A . n A 1 24 ARG 24 45 45 ARG ARG A . n A 1 25 LEU 25 46 46 LEU LEU A . n A 1 26 NH2 26 47 47 NH2 NH2 A . n B 1 1 SER 1 22 22 SER SER B . n B 1 2 SER 2 23 23 SER SER B . n B 1 3 ASP 3 24 24 ASP ASP B . n B 1 4 PRO 4 25 25 PRO PRO B . n B 1 5 LEU 5 26 26 LEU LEU B . n B 1 6 VAL 6 27 27 VAL VAL B . n B 1 7 VAL 7 28 28 VAL VAL B . n B 1 8 ALA 8 29 29 ALA ALA B . n B 1 9 ALA 9 30 30 ALA ALA B . n B 1 10 SER 10 31 31 SER SER B . n B 1 11 ILE 11 32 32 ILE ILE B . n B 1 12 MSE 12 33 33 MSE MSE B . n B 1 13 GLY 13 34 34 GLY GLY B . n B 1 14 ILE 14 35 35 ILE ILE B . n B 1 15 LEU 15 36 36 LEU LEU B . n B 1 16 HIS 16 37 37 HIS HIS B . n B 1 17 LEU 17 38 38 LEU LEU B . n B 1 18 ILE 18 39 39 ILE ILE B . n B 1 19 LEU 19 40 40 LEU LEU B . n B 1 20 TRP 20 41 41 TRP TRP B . n B 1 21 ILE 21 42 42 ILE ILE B . n B 1 22 LEU 22 43 43 LEU LEU B . n B 1 23 ASP 23 44 44 ASP ASP B . n B 1 24 ARG 24 45 45 ARG ARG B . n B 1 25 LEU 25 46 46 LEU LEU B . n B 1 26 NH2 26 47 47 NH2 NH2 B . n C 1 1 SER 1 22 22 SER SER C . n C 1 2 SER 2 23 23 SER SER C . n C 1 3 ASP 3 24 24 ASP ASP C . n C 1 4 PRO 4 25 25 PRO PRO C . n C 1 5 LEU 5 26 26 LEU LEU C . n C 1 6 VAL 6 27 27 VAL VAL C . n C 1 7 VAL 7 28 28 VAL VAL C . n C 1 8 ALA 8 29 29 ALA ALA C . n C 1 9 ALA 9 30 30 ALA ALA C . n C 1 10 SER 10 31 31 SER SER C . n C 1 11 ILE 11 32 32 ILE ILE C . n C 1 12 MSE 12 33 33 MSE MSE C . n C 1 13 GLY 13 34 34 GLY GLY C . n C 1 14 ILE 14 35 35 ILE ILE C . n C 1 15 LEU 15 36 36 LEU LEU C . n C 1 16 HIS 16 37 37 HIS HIS C . n C 1 17 LEU 17 38 38 LEU LEU C . n C 1 18 ILE 18 39 39 ILE ILE C . n C 1 19 LEU 19 40 40 LEU LEU C . n C 1 20 TRP 20 41 41 TRP TRP C . n C 1 21 ILE 21 42 42 ILE ILE C . n C 1 22 LEU 22 43 43 LEU LEU C . n C 1 23 ASP 23 44 44 ASP ASP C . n C 1 24 ARG 24 45 45 ARG ARG C . n C 1 25 LEU 25 46 46 LEU LEU C . n C 1 26 NH2 26 47 47 NH2 NH2 C . n D 1 1 SER 1 22 22 SER SER D . n D 1 2 SER 2 23 23 SER SER D . n D 1 3 ASP 3 24 24 ASP ASP D . n D 1 4 PRO 4 25 25 PRO PRO D . n D 1 5 LEU 5 26 26 LEU LEU D . n D 1 6 VAL 6 27 27 VAL VAL D . n D 1 7 VAL 7 28 28 VAL VAL D . n D 1 8 ALA 8 29 29 ALA ALA D . n D 1 9 ALA 9 30 30 ALA ALA D . n D 1 10 SER 10 31 31 SER SER D . n D 1 11 ILE 11 32 32 ILE ILE D . n D 1 12 MSE 12 33 33 MSE MSE D . n D 1 13 GLY 13 34 34 GLY GLY D . n D 1 14 ILE 14 35 35 ILE ILE D . n D 1 15 LEU 15 36 36 LEU LEU D . n D 1 16 HIS 16 37 37 HIS HIS D . n D 1 17 LEU 17 38 38 LEU LEU D . n D 1 18 ILE 18 39 39 ILE ILE D . n D 1 19 LEU 19 40 40 LEU LEU D . n D 1 20 TRP 20 41 41 TRP TRP D . n D 1 21 ILE 21 42 42 ILE ILE D . n D 1 22 LEU 22 43 43 LEU LEU D . n D 1 23 ASP 23 44 44 ASP ASP D . n D 1 24 ARG 24 45 45 ARG ARG D . n D 1 25 LEU 25 46 46 LEU LEU D . n D 1 26 NH2 26 47 47 NH2 NH2 D . n E 1 1 SER 1 22 22 SER SER E . n E 1 2 SER 2 23 23 SER SER E . n E 1 3 ASP 3 24 24 ASP ASP E . n E 1 4 PRO 4 25 25 PRO PRO E . n E 1 5 LEU 5 26 26 LEU LEU E . n E 1 6 VAL 6 27 27 VAL VAL E . n E 1 7 VAL 7 28 28 VAL VAL E . n E 1 8 ALA 8 29 29 ALA ALA E . n E 1 9 ALA 9 30 30 ALA ALA E . n E 1 10 SER 10 31 31 SER SER E . n E 1 11 ILE 11 32 32 ILE ILE E . n E 1 12 MSE 12 33 33 MSE MSE E . n E 1 13 GLY 13 34 34 GLY GLY E . n E 1 14 ILE 14 35 35 ILE ILE E . n E 1 15 LEU 15 36 36 LEU LEU E . n E 1 16 HIS 16 37 37 HIS HIS E . n E 1 17 LEU 17 38 38 LEU LEU E . n E 1 18 ILE 18 39 39 ILE ILE E . n E 1 19 LEU 19 40 40 LEU LEU E . n E 1 20 TRP 20 41 41 TRP TRP E . n E 1 21 ILE 21 42 42 ILE ILE E . n E 1 22 LEU 22 43 43 LEU LEU E . n E 1 23 ASP 23 44 44 ASP ASP E . n E 1 24 ARG 24 45 45 ARG ARG E . n E 1 25 LEU 25 46 46 LEU LEU E . n E 1 26 NH2 26 47 47 NH2 NH2 E . n F 1 1 SER 1 22 22 SER SER F . n F 1 2 SER 2 23 23 SER SER F . n F 1 3 ASP 3 24 24 ASP ASP F . n F 1 4 PRO 4 25 25 PRO PRO F . n F 1 5 LEU 5 26 26 LEU LEU F . n F 1 6 VAL 6 27 27 VAL VAL F . n F 1 7 VAL 7 28 28 VAL VAL F . n F 1 8 ALA 8 29 29 ALA ALA F . n F 1 9 ALA 9 30 30 ALA ALA F . n F 1 10 SER 10 31 31 SER SER F . n F 1 11 ILE 11 32 32 ILE ILE F . n F 1 12 MSE 12 33 33 MSE MSE F . n F 1 13 GLY 13 34 34 GLY GLY F . n F 1 14 ILE 14 35 35 ILE ILE F . n F 1 15 LEU 15 36 36 LEU LEU F . n F 1 16 HIS 16 37 37 HIS HIS F . n F 1 17 LEU 17 38 38 LEU LEU F . n F 1 18 ILE 18 39 39 ILE ILE F . n F 1 19 LEU 19 40 40 LEU LEU F . n F 1 20 TRP 20 41 41 TRP TRP F . n F 1 21 ILE 21 42 42 ILE ILE F . n F 1 22 LEU 22 43 43 LEU LEU F . n F 1 23 ASP 23 44 44 ASP ASP F . n F 1 24 ARG 24 45 45 ARG ARG F . n F 1 25 LEU 25 46 46 LEU LEU F . n F 1 26 NH2 26 47 47 NH2 NH2 F . n G 1 1 SER 1 22 22 SER SER G . n G 1 2 SER 2 23 23 SER SER G . n G 1 3 ASP 3 24 24 ASP ASP G . n G 1 4 PRO 4 25 25 PRO PRO G . n G 1 5 LEU 5 26 26 LEU LEU G . n G 1 6 VAL 6 27 27 VAL VAL G . n G 1 7 VAL 7 28 28 VAL VAL G . n G 1 8 ALA 8 29 29 ALA ALA G . n G 1 9 ALA 9 30 30 ALA ALA G . n G 1 10 SER 10 31 31 SER SER G . n G 1 11 ILE 11 32 32 ILE ILE G . n G 1 12 MSE 12 33 33 MSE MSE G . n G 1 13 GLY 13 34 34 GLY GLY G . n G 1 14 ILE 14 35 35 ILE ILE G . n G 1 15 LEU 15 36 36 LEU LEU G . n G 1 16 HIS 16 37 37 HIS HIS G . n G 1 17 LEU 17 38 38 LEU LEU G . n G 1 18 ILE 18 39 39 ILE ILE G . n G 1 19 LEU 19 40 40 LEU LEU G . n G 1 20 TRP 20 41 41 TRP TRP G . n G 1 21 ILE 21 42 42 ILE ILE G . n G 1 22 LEU 22 43 43 LEU LEU G . n G 1 23 ASP 23 44 44 ASP ASP G . n G 1 24 ARG 24 45 45 ARG ARG G . n G 1 25 LEU 25 46 46 LEU LEU G . n G 1 26 NH2 26 47 47 NH2 NH2 G . n H 1 1 SER 1 22 22 SER SER H . n H 1 2 SER 2 23 23 SER SER H . n H 1 3 ASP 3 24 24 ASP ASP H . n H 1 4 PRO 4 25 25 PRO PRO H . n H 1 5 LEU 5 26 26 LEU LEU H . n H 1 6 VAL 6 27 27 VAL VAL H . n H 1 7 VAL 7 28 28 VAL VAL H . n H 1 8 ALA 8 29 29 ALA ALA H . n H 1 9 ALA 9 30 30 ALA ALA H . n H 1 10 SER 10 31 31 SER SER H . n H 1 11 ILE 11 32 32 ILE ILE H . n H 1 12 MSE 12 33 33 MSE MSE H . n H 1 13 GLY 13 34 34 GLY GLY H . n H 1 14 ILE 14 35 35 ILE ILE H . n H 1 15 LEU 15 36 36 LEU LEU H . n H 1 16 HIS 16 37 37 HIS HIS H . n H 1 17 LEU 17 38 38 LEU LEU H . n H 1 18 ILE 18 39 39 ILE ILE H . n H 1 19 LEU 19 40 40 LEU LEU H . n H 1 20 TRP 20 41 41 TRP TRP H . n H 1 21 ILE 21 42 42 ILE ILE H . n H 1 22 LEU 22 43 43 LEU LEU H . n H 1 23 ASP 23 44 44 ASP ASP H . n H 1 24 ARG 24 45 45 ARG ARG H . n H 1 25 LEU 25 46 46 LEU LEU H . n H 1 26 NH2 26 47 47 NH2 NH2 H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 BOG 1 302 302 BOG BOG A . J 3 CL 1 101 101 CL CL A . K 4 PEG 1 401 401 PEG PEG A . L 4 PEG 1 803 803 PEG PEG A . M 2 BOG 1 301 301 BOG BOG B . N 4 PEG 1 402 402 PEG PEG B . O 4 PEG 1 403 403 PEG PEG B . P 2 BOG 1 303 303 BOG BOG C . Q 2 BOG 1 702 702 BOG BOG E . R 3 CL 1 501 501 CL CL E . S 4 PEG 1 801 801 PEG PEG E . T 4 PEG 1 802 802 PEG PEG E . U 2 BOG 1 701 701 BOG BOG G . V 2 BOG 1 703 703 BOG BOG G . W 5 HOH 1 804 205 HOH HOH A . W 5 HOH 2 805 207 HOH HOH A . W 5 HOH 3 806 210 HOH HOH A . W 5 HOH 4 807 216 HOH HOH A . W 5 HOH 5 808 221 HOH HOH A . W 5 HOH 6 809 613 HOH HOH A . X 5 HOH 1 404 203 HOH HOH B . X 5 HOH 2 405 209 HOH HOH B . X 5 HOH 3 406 211 HOH HOH B . X 5 HOH 4 407 215 HOH HOH B . Y 5 HOH 1 304 202 HOH HOH C . Y 5 HOH 2 305 206 HOH HOH C . Y 5 HOH 3 306 212 HOH HOH C . Y 5 HOH 4 307 218 HOH HOH C . Z 5 HOH 1 48 201 HOH HOH D . Z 5 HOH 2 49 204 HOH HOH D . Z 5 HOH 3 50 208 HOH HOH D . Z 5 HOH 4 51 213 HOH HOH D . Z 5 HOH 5 52 217 HOH HOH D . Z 5 HOH 6 53 219 HOH HOH D . Z 5 HOH 7 54 220 HOH HOH D . AA 5 HOH 1 803 214 HOH HOH E . AA 5 HOH 2 804 601 HOH HOH E . AA 5 HOH 3 805 607 HOH HOH E . AA 5 HOH 4 806 610 HOH HOH E . AA 5 HOH 5 807 615 HOH HOH E . AA 5 HOH 6 808 618 HOH HOH E . BA 5 HOH 1 48 603 HOH HOH F . BA 5 HOH 2 49 609 HOH HOH F . BA 5 HOH 3 50 617 HOH HOH F . CA 5 HOH 1 704 602 HOH HOH G . CA 5 HOH 2 705 605 HOH HOH G . CA 5 HOH 3 706 606 HOH HOH G . CA 5 HOH 4 707 614 HOH HOH G . DA 5 HOH 1 48 604 HOH HOH H . DA 5 HOH 2 49 608 HOH HOH H . DA 5 HOH 3 50 611 HOH HOH H . DA 5 HOH 4 51 612 HOH HOH H . DA 5 HOH 5 52 616 HOH HOH H . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3BKD _cell.length_a 38.753 _cell.length_b 56.557 _cell.length_c 56.009 _cell.angle_alpha 90.00 _cell.angle_beta 103.53 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BKD _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 4 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 3BKD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_percent_sol 53.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.pdbx_details ;Protein solution: 0.8mM protein, 32mM n-octyl-beta-D-glucopyranoside and 5%v/v xylitol. Reservoir solution: 50mM Tris-Hcl, 500mM MgCl2, 21% PEG 350 MME, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2001-10-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 Channel' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97853 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97853 # _reflns.entry_id 3BKD _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.0 _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 50.0 _reflns.number_all 15355 _reflns.number_obs 14567 _reflns.percent_possible_obs 94.9 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.4 _reflns.B_iso_Wilson_estimate 37.1 _reflns.pdbx_redundancy 3.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 75.1 _reflns_shell.Rmerge_I_obs 0.305 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_redundancy 2.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 777 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BKD _refine.ls_number_reflns_obs 14047 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.05 _refine.ls_percent_reflns_obs 99.32 _refine.ls_R_factor_obs 0.22158 _refine.ls_R_factor_all 0.244 _refine.ls_R_factor_R_work 0.21908 _refine.ls_R_factor_R_free 0.26871 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 747 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.937 _refine.correlation_coeff_Fo_to_Fc_free 0.915 _refine.B_iso_mean 31.117 _refine.aniso_B[1][1] -0.12 _refine.aniso_B[2][2] 2.17 _refine.aniso_B[3][3] -2.07 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.04 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'Amantandine-bound M2TM; G34A mutant' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.230 _refine.pdbx_overall_ESU_R_Free 0.199 _refine.overall_SU_ML 0.135 _refine.overall_SU_B 9.819 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1544 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 164 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 1747 _refine_hist.d_res_high 2.05 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1741 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.348 2.081 ? 2328 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.424 5.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.195 22.000 ? 40 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.966 15.000 ? 294 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.918 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.080 0.200 ? 321 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1032 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.188 0.200 ? 793 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.299 0.200 ? 1216 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.499 0.200 ? 32 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.200 0.200 ? 33 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.202 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.887 1.500 ? 1058 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.147 2.000 ? 1618 'X-RAY DIFFRACTION' ? r_scbond_it 1.662 3.000 ? 799 'X-RAY DIFFRACTION' ? r_scangle_it 2.289 4.500 ? 710 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 A 190 0.27 5.00 'loose positional' 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? 1 B 193 0.37 5.00 'loose positional' 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? 1 C 189 0.29 5.00 'loose positional' 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? 1 D 189 0.32 5.00 'loose positional' 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? 1 A 190 2.76 10.00 'loose thermal' 1 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? 1 B 193 1.29 10.00 'loose thermal' 2 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? 1 C 189 0.87 10.00 'loose thermal' 3 'X-RAY DIFFRACTION' 7 ? ? ? ? ? ? 1 D 189 1.34 10.00 'loose thermal' 4 'X-RAY DIFFRACTION' 8 ? ? ? ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.050 _refine_ls_shell.d_res_low 2.103 _refine_ls_shell.number_reflns_R_work 992 _refine_ls_shell.R_factor_R_work 0.217 _refine_ls_shell.percent_reflns_obs 96.67 _refine_ls_shell.R_factor_R_free 0.243 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 E 2 1 B 2 2 F 3 1 C 3 2 G 4 1 D 4 2 H # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A SER 1 . A NH2 26 . A SER 22 A NH2 47 6 ? 1 2 1 E SER 1 . E NH2 26 . E SER 22 E NH2 47 6 ? 2 1 1 B SER 1 . B NH2 26 . B SER 22 B NH2 47 6 ? 2 2 1 F SER 1 . F NH2 26 . F SER 22 F NH2 47 6 ? 3 1 1 C SER 1 . C NH2 26 . C SER 22 C NH2 47 6 ? 3 2 1 G SER 1 . G NH2 26 . G SER 22 G NH2 47 6 ? 4 1 1 D SER 1 . D NH2 26 . D SER 22 D NH2 47 6 ? 4 2 1 H SER 1 . H NH2 26 . H SER 22 H NH2 47 6 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? 4 ? # _struct.entry_id 3BKD _struct.title 'High resolution Crystal structure of Transmembrane domain of M2 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BKD _struct_keywords.pdbx_keywords 'VIRAL PROTEIN, MEMBRANE PROTEIN' _struct_keywords.text 'Proton channel, M2TM, Influenza A virus M2 Protein, VIRAL PROTEIN, MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 2 ? J N N 3 ? K N N 4 ? L N N 4 ? M N N 2 ? N N N 4 ? O N N 4 ? P N N 2 ? Q N N 2 ? R N N 3 ? S N N 4 ? T N N 4 ? U N N 2 ? V N N 2 ? W N N 5 ? X N N 5 ? Y N N 5 ? Z N N 5 ? AA N N 5 ? BA N N 5 ? CA N N 5 ? DA N N 5 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9Q0P0_9INFA _struct_ref.pdbx_db_accession Q9Q0P0 _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_seq_one_letter_code SSDPLVVAASIXGILHLILWILDRL _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BKD A 1 ? 25 ? Q9Q0P0 22 ? 46 ? 22 46 2 1 3BKD B 1 ? 25 ? Q9Q0P0 22 ? 46 ? 22 46 3 1 3BKD C 1 ? 25 ? Q9Q0P0 22 ? 46 ? 22 46 4 1 3BKD D 1 ? 25 ? Q9Q0P0 22 ? 46 ? 22 46 5 1 3BKD E 1 ? 25 ? Q9Q0P0 22 ? 46 ? 22 46 6 1 3BKD F 1 ? 25 ? Q9Q0P0 22 ? 46 ? 22 46 7 1 3BKD G 1 ? 25 ? Q9Q0P0 22 ? 46 ? 22 46 8 1 3BKD H 1 ? 25 ? Q9Q0P0 22 ? 46 ? 22 46 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 author_and_software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5750 ? 1 MORE -33 ? 1 'SSA (A^2)' 7710 ? 2 'ABSA (A^2)' 5470 ? 2 MORE -25 ? 2 'SSA (A^2)' 7470 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 E,F,G,H,Q,R,S,T,U,V,AA,BA,CA,DA 2 1 A,B,C,D,I,J,K,L,M,N,O,P,W,X,Y,Z # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 3 ? LEU A 25 ? ASP A 24 LEU A 46 1 ? 23 HELX_P HELX_P2 2 ASP B 3 ? LEU B 25 ? ASP B 24 LEU B 46 1 ? 23 HELX_P HELX_P3 3 ASP C 3 ? LEU C 25 ? ASP C 24 LEU C 46 1 ? 23 HELX_P HELX_P4 4 ASP D 3 ? LEU D 25 ? ASP D 24 LEU D 46 1 ? 23 HELX_P HELX_P5 5 ASP E 3 ? LEU E 25 ? ASP E 24 LEU E 46 1 ? 23 HELX_P HELX_P6 6 ASP F 3 ? LEU F 25 ? ASP F 24 LEU F 46 1 ? 23 HELX_P HELX_P7 7 ASP G 3 ? LEU G 25 ? ASP G 24 LEU G 46 1 ? 23 HELX_P HELX_P8 8 ASP H 3 ? LEU H 25 ? ASP H 24 LEU H 46 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ILE 11 C ? ? ? 1_555 A MSE 12 N ? ? A ILE 32 A MSE 33 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale2 covale both ? A MSE 12 C ? ? ? 1_555 A GLY 13 N ? ? A MSE 33 A GLY 34 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A LEU 25 C ? ? ? 1_555 A NH2 26 N ? ? A LEU 46 A NH2 47 1_555 ? ? ? ? ? ? ? 1.268 ? ? covale4 covale both ? B ILE 11 C ? ? ? 1_555 B MSE 12 N ? ? B ILE 32 B MSE 33 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale5 covale both ? B MSE 12 C ? ? ? 1_555 B GLY 13 N ? ? B MSE 33 B GLY 34 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? B LEU 25 C ? ? ? 1_555 B NH2 26 N ? ? B LEU 46 B NH2 47 1_555 ? ? ? ? ? ? ? 1.264 ? ? covale7 covale both ? C ILE 11 C ? ? ? 1_555 C MSE 12 N ? ? C ILE 32 C MSE 33 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale8 covale both ? C MSE 12 C ? ? ? 1_555 C GLY 13 N ? ? C MSE 33 C GLY 34 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale9 covale both ? C LEU 25 C ? ? ? 1_555 C NH2 26 N ? ? C LEU 46 C NH2 47 1_555 ? ? ? ? ? ? ? 1.262 ? ? covale10 covale both ? D ILE 11 C ? ? ? 1_555 D MSE 12 N ? ? D ILE 32 D MSE 33 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale11 covale both ? D MSE 12 C ? ? ? 1_555 D GLY 13 N ? ? D MSE 33 D GLY 34 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale12 covale both ? D LEU 25 C ? ? ? 1_555 D NH2 26 N ? ? D LEU 46 D NH2 47 1_555 ? ? ? ? ? ? ? 1.260 ? ? covale13 covale both ? E ILE 11 C ? ? ? 1_555 E MSE 12 N ? ? E ILE 32 E MSE 33 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale14 covale both ? E MSE 12 C ? ? ? 1_555 E GLY 13 N ? ? E MSE 33 E GLY 34 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale15 covale both ? E LEU 25 C ? ? ? 1_555 E NH2 26 N ? ? E LEU 46 E NH2 47 1_555 ? ? ? ? ? ? ? 1.268 ? ? covale16 covale both ? F ILE 11 C ? ? ? 1_555 F MSE 12 N ? ? F ILE 32 F MSE 33 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale17 covale both ? F MSE 12 C ? ? ? 1_555 F GLY 13 N ? ? F MSE 33 F GLY 34 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale18 covale both ? F LEU 25 C ? ? ? 1_555 F NH2 26 N ? ? F LEU 46 F NH2 47 1_555 ? ? ? ? ? ? ? 1.266 ? ? covale19 covale both ? G ILE 11 C ? ? ? 1_555 G MSE 12 N ? ? G ILE 32 G MSE 33 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale20 covale both ? G MSE 12 C ? ? ? 1_555 G GLY 13 N ? ? G MSE 33 G GLY 34 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale21 covale both ? G LEU 25 C ? ? ? 1_555 G NH2 26 N ? ? G LEU 46 G NH2 47 1_555 ? ? ? ? ? ? ? 1.268 ? ? covale22 covale both ? H ILE 11 C ? ? ? 1_555 H MSE 12 N ? ? H ILE 32 H MSE 33 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale23 covale both ? H MSE 12 C ? ? ? 1_555 H GLY 13 N ? ? H MSE 33 H GLY 34 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale24 covale both ? H LEU 25 C ? ? ? 1_555 H NH2 26 N ? ? H LEU 46 H NH2 47 1_555 ? ? ? ? ? ? ? 1.262 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA B LEU 26 ? ? CB B LEU 26 ? ? CG B LEU 26 ? ? 130.02 115.30 14.72 2.30 N 2 1 CA B MSE 33 ? ? CB B MSE 33 ? ? CG B MSE 33 ? ? 125.40 113.30 12.10 1.70 N 3 1 CA F LEU 26 ? ? CB F LEU 26 ? ? CG F LEU 26 ? ? 129.44 115.30 14.14 2.30 N 4 1 O F LEU 46 ? ? C F LEU 46 ? ? N F NH2 47 ? ? 110.00 122.70 -12.70 1.60 Y # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 ? A BOG 302 ? 'WRONG HAND' . 2 1 C2 ? A BOG 302 ? 'WRONG HAND' . 3 1 C4 ? A BOG 302 ? 'WRONG HAND' . 4 1 C5 ? A BOG 302 ? 'WRONG HAND' . 5 1 C1 ? B BOG 301 ? 'WRONG HAND' . 6 1 C2 ? B BOG 301 ? 'WRONG HAND' . 7 1 C4 ? B BOG 301 ? 'WRONG HAND' . 8 1 C5 ? B BOG 301 ? 'WRONG HAND' . 9 1 C1 ? C BOG 303 ? 'WRONG HAND' . 10 1 C2 ? C BOG 303 ? 'WRONG HAND' . 11 1 C4 ? C BOG 303 ? 'WRONG HAND' . 12 1 C5 ? C BOG 303 ? 'WRONG HAND' . 13 1 C1 ? E BOG 702 ? 'WRONG HAND' . 14 1 C2 ? E BOG 702 ? 'WRONG HAND' . 15 1 C4 ? E BOG 702 ? 'WRONG HAND' . 16 1 C5 ? E BOG 702 ? 'WRONG HAND' . 17 1 C1 ? G BOG 701 ? 'WRONG HAND' . 18 1 C2 ? G BOG 701 ? 'WRONG HAND' . 19 1 C4 ? G BOG 701 ? 'WRONG HAND' . 20 1 C5 ? G BOG 701 ? 'WRONG HAND' . 21 1 C1 ? G BOG 703 ? 'WRONG HAND' . 22 1 C2 ? G BOG 703 ? 'WRONG HAND' . 23 1 C4 ? G BOG 703 ? 'WRONG HAND' . 24 1 C5 ? G BOG 703 ? 'WRONG HAND' . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 12 A MSE 33 ? MET SELENOMETHIONINE 2 B MSE 12 B MSE 33 ? MET SELENOMETHIONINE 3 C MSE 12 C MSE 33 ? MET SELENOMETHIONINE 4 D MSE 12 D MSE 33 ? MET SELENOMETHIONINE 5 E MSE 12 E MSE 33 ? MET SELENOMETHIONINE 6 F MSE 12 F MSE 33 ? MET SELENOMETHIONINE 7 G MSE 12 G MSE 33 ? MET SELENOMETHIONINE 8 H MSE 12 H MSE 33 ? MET SELENOMETHIONINE # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 0.1479 15.7169 -0.9902 0.0000 -0.0130 0.0320 -0.0100 0.0017 -0.0015 0.1613 0.9080 1.7801 -0.2459 -0.5197 0.5549 0.0721 -0.0472 -0.0138 0.0951 0.0106 -0.0882 -0.1084 0.0771 -0.0826 'X-RAY DIFFRACTION' 2 ? refined 7.0243 11.4201 -28.1435 -0.0018 0.0321 -0.0126 0.0143 -0.0189 0.0073 0.2352 1.0747 2.4881 -0.1010 -0.6726 -0.4743 0.0279 -0.0390 -0.0272 -0.0490 0.0032 0.0477 0.1355 -0.0729 -0.0311 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 22 A 1 A 46 A 25 ? 'X-RAY DIFFRACTION' ? 2 1 B 22 B 1 B 46 B 25 ? 'X-RAY DIFFRACTION' ? 3 1 C 22 C 1 C 46 C 25 ? 'X-RAY DIFFRACTION' ? 4 1 D 22 D 1 D 46 D 25 ? 'X-RAY DIFFRACTION' ? 5 2 E 22 E 1 E 46 E 25 ? 'X-RAY DIFFRACTION' ? 6 2 F 22 F 1 F 46 F 25 ? 'X-RAY DIFFRACTION' ? 7 2 G 22 G 1 G 46 G 25 ? 'X-RAY DIFFRACTION' ? 8 2 H 22 H 1 H 46 H 25 ? 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 BOG C1 C N R 57 BOG O1 O N N 58 BOG C2 C N R 59 BOG O2 O N N 60 BOG C3 C N S 61 BOG O3 O N N 62 BOG C4 C N S 63 BOG O4 O N N 64 BOG C5 C N R 65 BOG O5 O N N 66 BOG C6 C N N 67 BOG O6 O N N 68 BOG "C1'" C N N 69 BOG "C2'" C N N 70 BOG "C3'" C N N 71 BOG "C4'" C N N 72 BOG "C5'" C N N 73 BOG "C6'" C N N 74 BOG "C7'" C N N 75 BOG "C8'" C N N 76 BOG H1 H N N 77 BOG H2 H N N 78 BOG HO2 H N N 79 BOG H3 H N N 80 BOG HO3 H N N 81 BOG H4 H N N 82 BOG HO4 H N N 83 BOG H5 H N N 84 BOG H61 H N N 85 BOG H62 H N N 86 BOG HO6 H N N 87 BOG "H1'1" H N N 88 BOG "H1'2" H N N 89 BOG "H2'1" H N N 90 BOG "H2'2" H N N 91 BOG "H3'1" H N N 92 BOG "H3'2" H N N 93 BOG "H4'1" H N N 94 BOG "H4'2" H N N 95 BOG "H5'1" H N N 96 BOG "H5'2" H N N 97 BOG "H6'1" H N N 98 BOG "H6'2" H N N 99 BOG "H7'1" H N N 100 BOG "H7'2" H N N 101 BOG "H8'1" H N N 102 BOG "H8'2" H N N 103 BOG "H8'3" H N N 104 CL CL CL N N 105 GLY N N N N 106 GLY CA C N N 107 GLY C C N N 108 GLY O O N N 109 GLY OXT O N N 110 GLY H H N N 111 GLY H2 H N N 112 GLY HA2 H N N 113 GLY HA3 H N N 114 GLY HXT H N N 115 HIS N N N N 116 HIS CA C N S 117 HIS C C N N 118 HIS O O N N 119 HIS CB C N N 120 HIS CG C Y N 121 HIS ND1 N Y N 122 HIS CD2 C Y N 123 HIS CE1 C Y N 124 HIS NE2 N Y N 125 HIS OXT O N N 126 HIS H H N N 127 HIS H2 H N N 128 HIS HA H N N 129 HIS HB2 H N N 130 HIS HB3 H N N 131 HIS HD1 H N N 132 HIS HD2 H N N 133 HIS HE1 H N N 134 HIS HE2 H N N 135 HIS HXT H N N 136 HOH O O N N 137 HOH H1 H N N 138 HOH H2 H N N 139 ILE N N N N 140 ILE CA C N S 141 ILE C C N N 142 ILE O O N N 143 ILE CB C N S 144 ILE CG1 C N N 145 ILE CG2 C N N 146 ILE CD1 C N N 147 ILE OXT O N N 148 ILE H H N N 149 ILE H2 H N N 150 ILE HA H N N 151 ILE HB H N N 152 ILE HG12 H N N 153 ILE HG13 H N N 154 ILE HG21 H N N 155 ILE HG22 H N N 156 ILE HG23 H N N 157 ILE HD11 H N N 158 ILE HD12 H N N 159 ILE HD13 H N N 160 ILE HXT H N N 161 LEU N N N N 162 LEU CA C N S 163 LEU C C N N 164 LEU O O N N 165 LEU CB C N N 166 LEU CG C N N 167 LEU CD1 C N N 168 LEU CD2 C N N 169 LEU OXT O N N 170 LEU H H N N 171 LEU H2 H N N 172 LEU HA H N N 173 LEU HB2 H N N 174 LEU HB3 H N N 175 LEU HG H N N 176 LEU HD11 H N N 177 LEU HD12 H N N 178 LEU HD13 H N N 179 LEU HD21 H N N 180 LEU HD22 H N N 181 LEU HD23 H N N 182 LEU HXT H N N 183 MSE N N N N 184 MSE CA C N S 185 MSE C C N N 186 MSE O O N N 187 MSE OXT O N N 188 MSE CB C N N 189 MSE CG C N N 190 MSE SE SE N N 191 MSE CE C N N 192 MSE H H N N 193 MSE H2 H N N 194 MSE HA H N N 195 MSE HXT H N N 196 MSE HB2 H N N 197 MSE HB3 H N N 198 MSE HG2 H N N 199 MSE HG3 H N N 200 MSE HE1 H N N 201 MSE HE2 H N N 202 MSE HE3 H N N 203 NH2 N N N N 204 NH2 HN1 H N N 205 NH2 HN2 H N N 206 PEG C1 C N N 207 PEG O1 O N N 208 PEG C2 C N N 209 PEG O2 O N N 210 PEG C3 C N N 211 PEG C4 C N N 212 PEG O4 O N N 213 PEG H11 H N N 214 PEG H12 H N N 215 PEG HO1 H N N 216 PEG H21 H N N 217 PEG H22 H N N 218 PEG H31 H N N 219 PEG H32 H N N 220 PEG H41 H N N 221 PEG H42 H N N 222 PEG HO4 H N N 223 PRO N N N N 224 PRO CA C N S 225 PRO C C N N 226 PRO O O N N 227 PRO CB C N N 228 PRO CG C N N 229 PRO CD C N N 230 PRO OXT O N N 231 PRO H H N N 232 PRO HA H N N 233 PRO HB2 H N N 234 PRO HB3 H N N 235 PRO HG2 H N N 236 PRO HG3 H N N 237 PRO HD2 H N N 238 PRO HD3 H N N 239 PRO HXT H N N 240 SER N N N N 241 SER CA C N S 242 SER C C N N 243 SER O O N N 244 SER CB C N N 245 SER OG O N N 246 SER OXT O N N 247 SER H H N N 248 SER H2 H N N 249 SER HA H N N 250 SER HB2 H N N 251 SER HB3 H N N 252 SER HG H N N 253 SER HXT H N N 254 TRP N N N N 255 TRP CA C N S 256 TRP C C N N 257 TRP O O N N 258 TRP CB C N N 259 TRP CG C Y N 260 TRP CD1 C Y N 261 TRP CD2 C Y N 262 TRP NE1 N Y N 263 TRP CE2 C Y N 264 TRP CE3 C Y N 265 TRP CZ2 C Y N 266 TRP CZ3 C Y N 267 TRP CH2 C Y N 268 TRP OXT O N N 269 TRP H H N N 270 TRP H2 H N N 271 TRP HA H N N 272 TRP HB2 H N N 273 TRP HB3 H N N 274 TRP HD1 H N N 275 TRP HE1 H N N 276 TRP HE3 H N N 277 TRP HZ2 H N N 278 TRP HZ3 H N N 279 TRP HH2 H N N 280 TRP HXT H N N 281 VAL N N N N 282 VAL CA C N S 283 VAL C C N N 284 VAL O O N N 285 VAL CB C N N 286 VAL CG1 C N N 287 VAL CG2 C N N 288 VAL OXT O N N 289 VAL H H N N 290 VAL H2 H N N 291 VAL HA H N N 292 VAL HB H N N 293 VAL HG11 H N N 294 VAL HG12 H N N 295 VAL HG13 H N N 296 VAL HG21 H N N 297 VAL HG22 H N N 298 VAL HG23 H N N 299 VAL HXT H N N 300 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 BOG C1 O1 sing N N 54 BOG C1 C2 sing N N 55 BOG C1 O5 sing N N 56 BOG C1 H1 sing N N 57 BOG O1 "C1'" sing N N 58 BOG C2 O2 sing N N 59 BOG C2 C3 sing N N 60 BOG C2 H2 sing N N 61 BOG O2 HO2 sing N N 62 BOG C3 O3 sing N N 63 BOG C3 C4 sing N N 64 BOG C3 H3 sing N N 65 BOG O3 HO3 sing N N 66 BOG C4 O4 sing N N 67 BOG C4 C5 sing N N 68 BOG C4 H4 sing N N 69 BOG O4 HO4 sing N N 70 BOG C5 O5 sing N N 71 BOG C5 C6 sing N N 72 BOG C5 H5 sing N N 73 BOG C6 O6 sing N N 74 BOG C6 H61 sing N N 75 BOG C6 H62 sing N N 76 BOG O6 HO6 sing N N 77 BOG "C1'" "C2'" sing N N 78 BOG "C1'" "H1'1" sing N N 79 BOG "C1'" "H1'2" sing N N 80 BOG "C2'" "C3'" sing N N 81 BOG "C2'" "H2'1" sing N N 82 BOG "C2'" "H2'2" sing N N 83 BOG "C3'" "C4'" sing N N 84 BOG "C3'" "H3'1" sing N N 85 BOG "C3'" "H3'2" sing N N 86 BOG "C4'" "C5'" sing N N 87 BOG "C4'" "H4'1" sing N N 88 BOG "C4'" "H4'2" sing N N 89 BOG "C5'" "C6'" sing N N 90 BOG "C5'" "H5'1" sing N N 91 BOG "C5'" "H5'2" sing N N 92 BOG "C6'" "C7'" sing N N 93 BOG "C6'" "H6'1" sing N N 94 BOG "C6'" "H6'2" sing N N 95 BOG "C7'" "C8'" sing N N 96 BOG "C7'" "H7'1" sing N N 97 BOG "C7'" "H7'2" sing N N 98 BOG "C8'" "H8'1" sing N N 99 BOG "C8'" "H8'2" sing N N 100 BOG "C8'" "H8'3" sing N N 101 GLY N CA sing N N 102 GLY N H sing N N 103 GLY N H2 sing N N 104 GLY CA C sing N N 105 GLY CA HA2 sing N N 106 GLY CA HA3 sing N N 107 GLY C O doub N N 108 GLY C OXT sing N N 109 GLY OXT HXT sing N N 110 HIS N CA sing N N 111 HIS N H sing N N 112 HIS N H2 sing N N 113 HIS CA C sing N N 114 HIS CA CB sing N N 115 HIS CA HA sing N N 116 HIS C O doub N N 117 HIS C OXT sing N N 118 HIS CB CG sing N N 119 HIS CB HB2 sing N N 120 HIS CB HB3 sing N N 121 HIS CG ND1 sing Y N 122 HIS CG CD2 doub Y N 123 HIS ND1 CE1 doub Y N 124 HIS ND1 HD1 sing N N 125 HIS CD2 NE2 sing Y N 126 HIS CD2 HD2 sing N N 127 HIS CE1 NE2 sing Y N 128 HIS CE1 HE1 sing N N 129 HIS NE2 HE2 sing N N 130 HIS OXT HXT sing N N 131 HOH O H1 sing N N 132 HOH O H2 sing N N 133 ILE N CA sing N N 134 ILE N H sing N N 135 ILE N H2 sing N N 136 ILE CA C sing N N 137 ILE CA CB sing N N 138 ILE CA HA sing N N 139 ILE C O doub N N 140 ILE C OXT sing N N 141 ILE CB CG1 sing N N 142 ILE CB CG2 sing N N 143 ILE CB HB sing N N 144 ILE CG1 CD1 sing N N 145 ILE CG1 HG12 sing N N 146 ILE CG1 HG13 sing N N 147 ILE CG2 HG21 sing N N 148 ILE CG2 HG22 sing N N 149 ILE CG2 HG23 sing N N 150 ILE CD1 HD11 sing N N 151 ILE CD1 HD12 sing N N 152 ILE CD1 HD13 sing N N 153 ILE OXT HXT sing N N 154 LEU N CA sing N N 155 LEU N H sing N N 156 LEU N H2 sing N N 157 LEU CA C sing N N 158 LEU CA CB sing N N 159 LEU CA HA sing N N 160 LEU C O doub N N 161 LEU C OXT sing N N 162 LEU CB CG sing N N 163 LEU CB HB2 sing N N 164 LEU CB HB3 sing N N 165 LEU CG CD1 sing N N 166 LEU CG CD2 sing N N 167 LEU CG HG sing N N 168 LEU CD1 HD11 sing N N 169 LEU CD1 HD12 sing N N 170 LEU CD1 HD13 sing N N 171 LEU CD2 HD21 sing N N 172 LEU CD2 HD22 sing N N 173 LEU CD2 HD23 sing N N 174 LEU OXT HXT sing N N 175 MSE N CA sing N N 176 MSE N H sing N N 177 MSE N H2 sing N N 178 MSE CA C sing N N 179 MSE CA CB sing N N 180 MSE CA HA sing N N 181 MSE C O doub N N 182 MSE C OXT sing N N 183 MSE OXT HXT sing N N 184 MSE CB CG sing N N 185 MSE CB HB2 sing N N 186 MSE CB HB3 sing N N 187 MSE CG SE sing N N 188 MSE CG HG2 sing N N 189 MSE CG HG3 sing N N 190 MSE SE CE sing N N 191 MSE CE HE1 sing N N 192 MSE CE HE2 sing N N 193 MSE CE HE3 sing N N 194 NH2 N HN1 sing N N 195 NH2 N HN2 sing N N 196 PEG C1 O1 sing N N 197 PEG C1 C2 sing N N 198 PEG C1 H11 sing N N 199 PEG C1 H12 sing N N 200 PEG O1 HO1 sing N N 201 PEG C2 O2 sing N N 202 PEG C2 H21 sing N N 203 PEG C2 H22 sing N N 204 PEG O2 C3 sing N N 205 PEG C3 C4 sing N N 206 PEG C3 H31 sing N N 207 PEG C3 H32 sing N N 208 PEG C4 O4 sing N N 209 PEG C4 H41 sing N N 210 PEG C4 H42 sing N N 211 PEG O4 HO4 sing N N 212 PRO N CA sing N N 213 PRO N CD sing N N 214 PRO N H sing N N 215 PRO CA C sing N N 216 PRO CA CB sing N N 217 PRO CA HA sing N N 218 PRO C O doub N N 219 PRO C OXT sing N N 220 PRO CB CG sing N N 221 PRO CB HB2 sing N N 222 PRO CB HB3 sing N N 223 PRO CG CD sing N N 224 PRO CG HG2 sing N N 225 PRO CG HG3 sing N N 226 PRO CD HD2 sing N N 227 PRO CD HD3 sing N N 228 PRO OXT HXT sing N N 229 SER N CA sing N N 230 SER N H sing N N 231 SER N H2 sing N N 232 SER CA C sing N N 233 SER CA CB sing N N 234 SER CA HA sing N N 235 SER C O doub N N 236 SER C OXT sing N N 237 SER CB OG sing N N 238 SER CB HB2 sing N N 239 SER CB HB3 sing N N 240 SER OG HG sing N N 241 SER OXT HXT sing N N 242 TRP N CA sing N N 243 TRP N H sing N N 244 TRP N H2 sing N N 245 TRP CA C sing N N 246 TRP CA CB sing N N 247 TRP CA HA sing N N 248 TRP C O doub N N 249 TRP C OXT sing N N 250 TRP CB CG sing N N 251 TRP CB HB2 sing N N 252 TRP CB HB3 sing N N 253 TRP CG CD1 doub Y N 254 TRP CG CD2 sing Y N 255 TRP CD1 NE1 sing Y N 256 TRP CD1 HD1 sing N N 257 TRP CD2 CE2 doub Y N 258 TRP CD2 CE3 sing Y N 259 TRP NE1 CE2 sing Y N 260 TRP NE1 HE1 sing N N 261 TRP CE2 CZ2 sing Y N 262 TRP CE3 CZ3 doub Y N 263 TRP CE3 HE3 sing N N 264 TRP CZ2 CH2 doub Y N 265 TRP CZ2 HZ2 sing N N 266 TRP CZ3 CH2 sing Y N 267 TRP CZ3 HZ3 sing N N 268 TRP CH2 HH2 sing N N 269 TRP OXT HXT sing N N 270 VAL N CA sing N N 271 VAL N H sing N N 272 VAL N H2 sing N N 273 VAL CA C sing N N 274 VAL CA CB sing N N 275 VAL CA HA sing N N 276 VAL C O doub N N 277 VAL C OXT sing N N 278 VAL CB CG1 sing N N 279 VAL CB CG2 sing N N 280 VAL CB HB sing N N 281 VAL CG1 HG11 sing N N 282 VAL CG1 HG12 sing N N 283 VAL CG1 HG13 sing N N 284 VAL CG2 HG21 sing N N 285 VAL CG2 HG22 sing N N 286 VAL CG2 HG23 sing N N 287 VAL OXT HXT sing N N 288 # _pdbx_initial_refinement_model.accession_code 3C9J _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'Amantandine-bound M2TM; G34A mutant' # _atom_sites.entry_id 3BKD _atom_sites.fract_transf_matrix[1][1] 0.025804 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006209 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017681 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018364 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O SE # loop_