data_3BKT # _entry.id 3BKT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BKT pdb_00003bkt 10.2210/pdb3bkt/pdb RCSB RCSB045643 ? ? WWPDB D_1000045643 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BKF 'zn-bound c-terminal domain of NikR' unspecified PDB 3BKU 'Apo c-terminal domain of NikR' unspecified # _pdbx_database_status.entry_id 3BKT _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Phillips, C.M.' 1 'Schreiter, E.R.' 2 'Drennan, C.L.' 3 # _citation.id primary _citation.title 'Structural Basis of the Metal Specificity for Nickel Regulatory Protein NikR.' _citation.journal_abbrev Biochemistry _citation.journal_volume 47 _citation.page_first 1938 _citation.page_last 1946 _citation.year 2008 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18193897 _citation.pdbx_database_id_DOI 10.1021/bi702006h # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Phillips, C.M.' 1 ? primary 'Schreiter, E.R.' 2 ? primary 'Guo, Y.' 3 ? primary 'Wang, S.C.' 4 ? primary 'Zamble, D.B.' 5 ? primary 'Drennan, C.L.' 6 ? # _cell.length_a 45.949 _cell.length_b 78.442 _cell.length_c 81.460 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3BKT _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3BKT _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nickel-responsive regulator' 9724.845 4 ? ? ? ? 2 non-polymer syn 'COPPER (II) ION' 63.546 4 ? ? ? ? 3 water nat water 18.015 171 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQ CLPKED ; _entity_poly.pdbx_seq_one_letter_code_can ;HGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQ CLPKED ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 GLY n 1 3 THR n 1 4 GLN n 1 5 GLY n 1 6 PHE n 1 7 ALA n 1 8 VAL n 1 9 LEU n 1 10 SER n 1 11 TYR n 1 12 VAL n 1 13 TYR n 1 14 GLU n 1 15 HIS n 1 16 GLU n 1 17 LYS n 1 18 ARG n 1 19 ASP n 1 20 LEU n 1 21 ALA n 1 22 SER n 1 23 ARG n 1 24 ILE n 1 25 VAL n 1 26 SER n 1 27 THR n 1 28 GLN n 1 29 HIS n 1 30 HIS n 1 31 HIS n 1 32 HIS n 1 33 ASP n 1 34 LEU n 1 35 SER n 1 36 VAL n 1 37 ALA n 1 38 THR n 1 39 LEU n 1 40 HIS n 1 41 VAL n 1 42 HIS n 1 43 ILE n 1 44 ASN n 1 45 HIS n 1 46 ASP n 1 47 ASP n 1 48 CYS n 1 49 LEU n 1 50 GLU n 1 51 ILE n 1 52 ALA n 1 53 VAL n 1 54 LEU n 1 55 LYS n 1 56 GLY n 1 57 ASP n 1 58 MET n 1 59 GLY n 1 60 ASP n 1 61 VAL n 1 62 GLN n 1 63 HIS n 1 64 PHE n 1 65 ALA n 1 66 ASP n 1 67 ASP n 1 68 VAL n 1 69 ILE n 1 70 ALA n 1 71 GLN n 1 72 ARG n 1 73 GLY n 1 74 VAL n 1 75 ARG n 1 76 HIS n 1 77 GLY n 1 78 HIS n 1 79 LEU n 1 80 GLN n 1 81 CYS n 1 82 LEU n 1 83 PRO n 1 84 LYS n 1 85 GLU n 1 86 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene nikR _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NIKR_ECOLI _struct_ref.pdbx_db_accession P0A6Z6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;HGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQ CLPKED ; _struct_ref.pdbx_align_begin 48 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BKT A 1 ? 86 ? P0A6Z6 48 ? 133 ? 48 133 2 1 3BKT B 1 ? 86 ? P0A6Z6 48 ? 133 ? 48 133 3 1 3BKT C 1 ? 86 ? P0A6Z6 48 ? 133 ? 48 133 4 1 3BKT D 1 ? 86 ? P0A6Z6 48 ? 133 ? 48 133 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3BKT _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 34.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.2M Na Tartrate, 20% PEG 3350, pH 8.0, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2004-02-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 8-BM' _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 8-BM # _reflns.entry_id 3BKT _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 50.000 _reflns.number_obs 46684 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_netI_over_sigmaI 16.900 _reflns.pdbx_chi_squared 1.135 _reflns.percent_possible_obs 97.900 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 47685 _reflns.pdbx_Rsym_value 0.057 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.263 _reflns_shell.meanI_over_sigI_obs 5.3 _reflns_shell.pdbx_Rsym_value 0.254 _reflns_shell.pdbx_chi_squared 1.313 _reflns_shell.pdbx_redundancy 6.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4006 _reflns_shell.percent_possible_all 85.20 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3BKT _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 15.170 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.940 _refine.ls_number_reflns_obs 46629 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_R_work 0.196 _refine.ls_R_factor_R_free 0.227 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 2360 _refine.B_iso_mean 16.047 _refine.aniso_B[1][1] 0.040 _refine.aniso_B[2][2] -0.020 _refine.aniso_B[3][3] -0.010 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.pdbx_overall_ESU_R 0.115 _refine.pdbx_overall_ESU_R_Free 0.088 _refine.overall_SU_ML 0.054 _refine.overall_SU_B 3.108 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct . _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0.00 _refine.ls_number_reflns_all 46684 _refine.ls_R_factor_all 0.198 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'The tetramer of nickel-bound c-terminal domain of NikR, 1Q5Y' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2618 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 171 _refine_hist.number_atoms_total 2793 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 15.170 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2689 0.011 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1650 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3669 1.346 1.894 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 4060 0.877 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 343 5.878 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 140 34.752 24.286 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 419 14.148 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9 17.066 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 419 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 3083 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 534 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 526 0.209 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1647 0.187 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1240 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1402 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 151 0.179 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 5 0.040 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 20 0.159 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 41 0.183 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 8 0.219 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1722 1.403 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 682 0.527 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2681 2.105 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1059 2.808 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 982 3.800 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 4676 2.663 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 175 6.882 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 4267 3.062 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.541 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 82.540 _refine_ls_shell.number_reflns_R_work 2713 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.220 _refine_ls_shell.R_factor_R_free 0.299 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 138 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2851 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BKT _struct.title 'Copper-bound C-terminal Domain of NikR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BKT _struct_keywords.text ;NikR, nickel regulatory protein, transcription factor, beta sandwich, DNA-binding, Metal-binding, Repressor, Transcription regulation, METAL BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 17 ? HIS A 31 ? LYS A 64 HIS A 78 1 ? 15 HELX_P HELX_P2 2 MET A 58 ? ALA A 70 ? MET A 105 ALA A 117 1 ? 13 HELX_P HELX_P3 3 ARG B 18 ? HIS B 31 ? ARG B 65 HIS B 78 1 ? 14 HELX_P HELX_P4 4 MET B 58 ? ALA B 70 ? MET B 105 ALA B 117 1 ? 13 HELX_P HELX_P5 5 LYS C 17 ? HIS C 31 ? LYS C 64 HIS C 78 1 ? 15 HELX_P HELX_P6 6 ASP C 57 ? ALA C 70 ? ASP C 104 ALA C 117 1 ? 14 HELX_P HELX_P7 7 LEU D 20 ? HIS D 30 ? LEU D 67 HIS D 77 1 ? 11 HELX_P HELX_P8 8 MET D 58 ? ALA D 70 ? MET D 105 ALA D 117 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E CU . CU ? ? ? 1_555 A HIS 40 NE2 ? ? A CU 2 A HIS 87 1_555 ? ? ? ? ? ? ? 2.007 ? ? metalc2 metalc ? ? E CU . CU ? ? ? 1_555 A HIS 42 ND1 ? ? A CU 2 A HIS 89 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc3 metalc ? ? E CU . CU ? ? ? 1_555 C HIS 29 NE2 ? ? A CU 2 C HIS 76 1_555 ? ? ? ? ? ? ? 1.991 ? ? metalc4 metalc ? ? A HIS 29 NE2 ? ? ? 1_555 G CU . CU ? ? A HIS 76 C CU 1 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc5 metalc ? ? F CU . CU ? ? ? 1_555 B HIS 40 NE2 ? ? B CU 4 B HIS 87 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc6 metalc ? ? F CU . CU ? ? ? 1_555 B HIS 42 ND1 ? ? B CU 4 B HIS 89 1_555 ? ? ? ? ? ? ? 2.240 ? ? metalc7 metalc ? ? F CU . CU ? ? ? 1_555 D HIS 29 NE2 ? ? B CU 4 D HIS 76 1_555 ? ? ? ? ? ? ? 1.956 ? ? metalc8 metalc ? ? B HIS 29 NE2 ? ? ? 1_555 H CU . CU ? ? B HIS 76 D CU 3 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc9 metalc ? ? G CU . CU ? ? ? 1_555 C HIS 40 NE2 ? ? C CU 1 C HIS 87 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc10 metalc ? ? H CU . CU ? ? ? 1_555 D HIS 40 NE2 ? ? D CU 3 D HIS 87 1_555 ? ? ? ? ? ? ? 2.025 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 75 ? PRO A 83 ? ARG A 122 PRO A 130 A 2 GLN A 4 ? GLU A 14 ? GLN A 51 GLU A 61 A 3 ASP A 47 ? ASP A 57 ? ASP A 94 ASP A 104 A 4 SER A 35 ? HIS A 42 ? SER A 82 HIS A 89 A 5 SER C 35 ? HIS C 42 ? SER C 82 HIS C 89 A 6 ASP C 47 ? GLY C 56 ? ASP C 94 GLY C 103 A 7 GLY C 5 ? GLU C 14 ? GLY C 52 GLU C 61 A 8 ARG C 75 ? PRO C 83 ? ARG C 122 PRO C 130 B 1 ARG B 75 ? PRO B 83 ? ARG B 122 PRO B 130 B 2 GLN B 4 ? GLU B 14 ? GLN B 51 GLU B 61 B 3 ASP B 47 ? ASP B 57 ? ASP B 94 ASP B 104 B 4 SER B 35 ? HIS B 42 ? SER B 82 HIS B 89 B 5 SER D 35 ? HIS D 42 ? SER D 82 HIS D 89 B 6 ASP D 47 ? ASP D 57 ? ASP D 94 ASP D 104 B 7 GLN D 4 ? GLU D 14 ? GLN D 51 GLU D 61 B 8 VAL D 74 ? PRO D 83 ? VAL D 121 PRO D 130 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 75 ? O ARG A 122 N VAL A 12 ? N VAL A 59 A 2 3 N TYR A 13 ? N TYR A 60 O CYS A 48 ? O CYS A 95 A 3 4 O VAL A 53 ? O VAL A 100 N VAL A 36 ? N VAL A 83 A 4 5 N THR A 38 ? N THR A 85 O HIS C 40 ? O HIS C 87 A 5 6 N VAL C 36 ? N VAL C 83 O VAL C 53 ? O VAL C 100 A 6 7 O ALA C 52 ? O ALA C 99 N LEU C 9 ? N LEU C 56 A 7 8 N PHE C 6 ? N PHE C 53 O LEU C 82 ? O LEU C 129 B 1 2 O LEU B 82 ? O LEU B 129 N PHE B 6 ? N PHE B 53 B 2 3 N LEU B 9 ? N LEU B 56 O ALA B 52 ? O ALA B 99 B 3 4 O VAL B 53 ? O VAL B 100 N VAL B 36 ? N VAL B 83 B 4 5 N THR B 38 ? N THR B 85 O HIS D 40 ? O HIS D 87 B 5 6 N VAL D 36 ? N VAL D 83 O VAL D 53 ? O VAL D 100 B 6 7 O CYS D 48 ? O CYS D 95 N TYR D 13 ? N TYR D 60 B 7 8 N VAL D 12 ? N VAL D 59 O ARG D 75 ? O ARG D 122 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CU 2 ? 4 'BINDING SITE FOR RESIDUE CU A 2' AC2 Software B CU 4 ? 5 'BINDING SITE FOR RESIDUE CU B 4' AC3 Software C CU 1 ? 5 'BINDING SITE FOR RESIDUE CU C 1' AC4 Software D CU 3 ? 5 'BINDING SITE FOR RESIDUE CU D 3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 40 ? HIS A 87 . ? 1_555 ? 2 AC1 4 HIS A 42 ? HIS A 89 . ? 1_555 ? 3 AC1 4 CYS A 48 ? CYS A 95 . ? 1_555 ? 4 AC1 4 HIS C 29 ? HIS C 76 . ? 1_555 ? 5 AC2 5 HIS B 40 ? HIS B 87 . ? 1_555 ? 6 AC2 5 HIS B 42 ? HIS B 89 . ? 1_555 ? 7 AC2 5 CYS B 48 ? CYS B 95 . ? 1_555 ? 8 AC2 5 VAL D 25 ? VAL D 72 . ? 1_555 ? 9 AC2 5 HIS D 29 ? HIS D 76 . ? 1_555 ? 10 AC3 5 VAL A 25 ? VAL A 72 . ? 1_555 ? 11 AC3 5 HIS A 29 ? HIS A 76 . ? 1_555 ? 12 AC3 5 HIS C 40 ? HIS C 87 . ? 1_555 ? 13 AC3 5 HIS C 42 ? HIS C 89 . ? 1_555 ? 14 AC3 5 CYS C 48 ? CYS C 95 . ? 1_555 ? 15 AC4 5 VAL B 25 ? VAL B 72 . ? 1_555 ? 16 AC4 5 HIS B 29 ? HIS B 76 . ? 1_555 ? 17 AC4 5 HIS D 40 ? HIS D 87 . ? 1_555 ? 18 AC4 5 HIS D 42 ? HIS D 89 . ? 1_555 ? 19 AC4 5 CYS D 48 ? CYS D 95 . ? 1_555 ? # _atom_sites.entry_id 3BKT _atom_sites.fract_transf_matrix[1][1] 0.021763 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012748 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012276 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CU N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 48 ? ? ? A . n A 1 2 GLY 2 49 ? ? ? A . n A 1 3 THR 3 50 50 THR THR A . n A 1 4 GLN 4 51 51 GLN GLN A . n A 1 5 GLY 5 52 52 GLY GLY A . n A 1 6 PHE 6 53 53 PHE PHE A . n A 1 7 ALA 7 54 54 ALA ALA A . n A 1 8 VAL 8 55 55 VAL VAL A . n A 1 9 LEU 9 56 56 LEU LEU A . n A 1 10 SER 10 57 57 SER SER A . n A 1 11 TYR 11 58 58 TYR TYR A . n A 1 12 VAL 12 59 59 VAL VAL A . n A 1 13 TYR 13 60 60 TYR TYR A . n A 1 14 GLU 14 61 61 GLU GLU A . n A 1 15 HIS 15 62 62 HIS HIS A . n A 1 16 GLU 16 63 63 GLU GLU A . n A 1 17 LYS 17 64 64 LYS LYS A . n A 1 18 ARG 18 65 65 ARG ARG A . n A 1 19 ASP 19 66 66 ASP ASP A . n A 1 20 LEU 20 67 67 LEU LEU A . n A 1 21 ALA 21 68 68 ALA ALA A . n A 1 22 SER 22 69 69 SER SER A . n A 1 23 ARG 23 70 70 ARG ARG A . n A 1 24 ILE 24 71 71 ILE ILE A . n A 1 25 VAL 25 72 72 VAL VAL A . n A 1 26 SER 26 73 73 SER SER A . n A 1 27 THR 27 74 74 THR THR A . n A 1 28 GLN 28 75 75 GLN GLN A . n A 1 29 HIS 29 76 76 HIS HIS A . n A 1 30 HIS 30 77 77 HIS HIS A . n A 1 31 HIS 31 78 78 HIS HIS A . n A 1 32 HIS 32 79 79 HIS HIS A . n A 1 33 ASP 33 80 80 ASP ASP A . n A 1 34 LEU 34 81 81 LEU LEU A . n A 1 35 SER 35 82 82 SER SER A . n A 1 36 VAL 36 83 83 VAL VAL A . n A 1 37 ALA 37 84 84 ALA ALA A . n A 1 38 THR 38 85 85 THR THR A . n A 1 39 LEU 39 86 86 LEU LEU A . n A 1 40 HIS 40 87 87 HIS HIS A . n A 1 41 VAL 41 88 88 VAL VAL A . n A 1 42 HIS 42 89 89 HIS HIS A . n A 1 43 ILE 43 90 90 ILE ILE A . n A 1 44 ASN 44 91 91 ASN ASN A . n A 1 45 HIS 45 92 92 HIS HIS A . n A 1 46 ASP 46 93 93 ASP ASP A . n A 1 47 ASP 47 94 94 ASP ASP A . n A 1 48 CYS 48 95 95 CYS CYS A . n A 1 49 LEU 49 96 96 LEU LEU A . n A 1 50 GLU 50 97 97 GLU GLU A . n A 1 51 ILE 51 98 98 ILE ILE A . n A 1 52 ALA 52 99 99 ALA ALA A . n A 1 53 VAL 53 100 100 VAL VAL A . n A 1 54 LEU 54 101 101 LEU LEU A . n A 1 55 LYS 55 102 102 LYS LYS A . n A 1 56 GLY 56 103 103 GLY GLY A . n A 1 57 ASP 57 104 104 ASP ASP A . n A 1 58 MET 58 105 105 MET MET A . n A 1 59 GLY 59 106 106 GLY GLY A . n A 1 60 ASP 60 107 107 ASP ASP A . n A 1 61 VAL 61 108 108 VAL VAL A . n A 1 62 GLN 62 109 109 GLN GLN A . n A 1 63 HIS 63 110 110 HIS HIS A . n A 1 64 PHE 64 111 111 PHE PHE A . n A 1 65 ALA 65 112 112 ALA ALA A . n A 1 66 ASP 66 113 113 ASP ASP A . n A 1 67 ASP 67 114 114 ASP ASP A . n A 1 68 VAL 68 115 115 VAL VAL A . n A 1 69 ILE 69 116 116 ILE ILE A . n A 1 70 ALA 70 117 117 ALA ALA A . n A 1 71 GLN 71 118 118 GLN GLN A . n A 1 72 ARG 72 119 119 ARG ARG A . n A 1 73 GLY 73 120 120 GLY GLY A . n A 1 74 VAL 74 121 121 VAL VAL A . n A 1 75 ARG 75 122 122 ARG ARG A . n A 1 76 HIS 76 123 123 HIS HIS A . n A 1 77 GLY 77 124 124 GLY GLY A . n A 1 78 HIS 78 125 125 HIS HIS A . n A 1 79 LEU 79 126 126 LEU LEU A . n A 1 80 GLN 80 127 127 GLN GLN A . n A 1 81 CYS 81 128 128 CYS CYS A . n A 1 82 LEU 82 129 129 LEU LEU A . n A 1 83 PRO 83 130 130 PRO PRO A . n A 1 84 LYS 84 131 131 LYS LYS A . n A 1 85 GLU 85 132 132 GLU GLU A . n A 1 86 ASP 86 133 ? ? ? A . n B 1 1 HIS 1 48 ? ? ? B . n B 1 2 GLY 2 49 ? ? ? B . n B 1 3 THR 3 50 50 THR THR B . n B 1 4 GLN 4 51 51 GLN GLN B . n B 1 5 GLY 5 52 52 GLY GLY B . n B 1 6 PHE 6 53 53 PHE PHE B . n B 1 7 ALA 7 54 54 ALA ALA B . n B 1 8 VAL 8 55 55 VAL VAL B . n B 1 9 LEU 9 56 56 LEU LEU B . n B 1 10 SER 10 57 57 SER SER B . n B 1 11 TYR 11 58 58 TYR TYR B . n B 1 12 VAL 12 59 59 VAL VAL B . n B 1 13 TYR 13 60 60 TYR TYR B . n B 1 14 GLU 14 61 61 GLU GLU B . n B 1 15 HIS 15 62 62 HIS HIS B . n B 1 16 GLU 16 63 63 GLU GLU B . n B 1 17 LYS 17 64 64 LYS LYS B . n B 1 18 ARG 18 65 65 ARG ARG B . n B 1 19 ASP 19 66 66 ASP ASP B . n B 1 20 LEU 20 67 67 LEU LEU B . n B 1 21 ALA 21 68 68 ALA ALA B . n B 1 22 SER 22 69 69 SER SER B . n B 1 23 ARG 23 70 70 ARG ARG B . n B 1 24 ILE 24 71 71 ILE ILE B . n B 1 25 VAL 25 72 72 VAL VAL B . n B 1 26 SER 26 73 73 SER SER B . n B 1 27 THR 27 74 74 THR THR B . n B 1 28 GLN 28 75 75 GLN GLN B . n B 1 29 HIS 29 76 76 HIS HIS B . n B 1 30 HIS 30 77 77 HIS HIS B . n B 1 31 HIS 31 78 78 HIS HIS B . n B 1 32 HIS 32 79 79 HIS HIS B . n B 1 33 ASP 33 80 80 ASP ASP B . n B 1 34 LEU 34 81 81 LEU LEU B . n B 1 35 SER 35 82 82 SER SER B . n B 1 36 VAL 36 83 83 VAL VAL B . n B 1 37 ALA 37 84 84 ALA ALA B . n B 1 38 THR 38 85 85 THR THR B . n B 1 39 LEU 39 86 86 LEU LEU B . n B 1 40 HIS 40 87 87 HIS HIS B . n B 1 41 VAL 41 88 88 VAL VAL B . n B 1 42 HIS 42 89 89 HIS HIS B . n B 1 43 ILE 43 90 90 ILE ILE B . n B 1 44 ASN 44 91 91 ASN ASN B . n B 1 45 HIS 45 92 92 HIS HIS B . n B 1 46 ASP 46 93 93 ASP ASP B . n B 1 47 ASP 47 94 94 ASP ASP B . n B 1 48 CYS 48 95 95 CYS CYS B . n B 1 49 LEU 49 96 96 LEU LEU B . n B 1 50 GLU 50 97 97 GLU GLU B . n B 1 51 ILE 51 98 98 ILE ILE B . n B 1 52 ALA 52 99 99 ALA ALA B . n B 1 53 VAL 53 100 100 VAL VAL B . n B 1 54 LEU 54 101 101 LEU LEU B . n B 1 55 LYS 55 102 102 LYS LYS B . n B 1 56 GLY 56 103 103 GLY GLY B . n B 1 57 ASP 57 104 104 ASP ASP B . n B 1 58 MET 58 105 105 MET MET B . n B 1 59 GLY 59 106 106 GLY GLY B . n B 1 60 ASP 60 107 107 ASP ASP B . n B 1 61 VAL 61 108 108 VAL VAL B . n B 1 62 GLN 62 109 109 GLN GLN B . n B 1 63 HIS 63 110 110 HIS HIS B . n B 1 64 PHE 64 111 111 PHE PHE B . n B 1 65 ALA 65 112 112 ALA ALA B . n B 1 66 ASP 66 113 113 ASP ASP B . n B 1 67 ASP 67 114 114 ASP ASP B . n B 1 68 VAL 68 115 115 VAL VAL B . n B 1 69 ILE 69 116 116 ILE ILE B . n B 1 70 ALA 70 117 117 ALA ALA B . n B 1 71 GLN 71 118 118 GLN GLN B . n B 1 72 ARG 72 119 119 ARG ARG B . n B 1 73 GLY 73 120 120 GLY GLY B . n B 1 74 VAL 74 121 121 VAL VAL B . n B 1 75 ARG 75 122 122 ARG ARG B . n B 1 76 HIS 76 123 123 HIS HIS B . n B 1 77 GLY 77 124 124 GLY GLY B . n B 1 78 HIS 78 125 125 HIS HIS B . n B 1 79 LEU 79 126 126 LEU LEU B . n B 1 80 GLN 80 127 127 GLN GLN B . n B 1 81 CYS 81 128 128 CYS CYS B . n B 1 82 LEU 82 129 129 LEU LEU B . n B 1 83 PRO 83 130 130 PRO PRO B . n B 1 84 LYS 84 131 131 LYS LYS B . n B 1 85 GLU 85 132 132 GLU GLU B . n B 1 86 ASP 86 133 ? ? ? B . n C 1 1 HIS 1 48 ? ? ? C . n C 1 2 GLY 2 49 ? ? ? C . n C 1 3 THR 3 50 ? ? ? C . n C 1 4 GLN 4 51 51 GLN GLN C . n C 1 5 GLY 5 52 52 GLY GLY C . n C 1 6 PHE 6 53 53 PHE PHE C . n C 1 7 ALA 7 54 54 ALA ALA C . n C 1 8 VAL 8 55 55 VAL VAL C . n C 1 9 LEU 9 56 56 LEU LEU C . n C 1 10 SER 10 57 57 SER SER C . n C 1 11 TYR 11 58 58 TYR TYR C . n C 1 12 VAL 12 59 59 VAL VAL C . n C 1 13 TYR 13 60 60 TYR TYR C . n C 1 14 GLU 14 61 61 GLU GLU C . n C 1 15 HIS 15 62 62 HIS HIS C . n C 1 16 GLU 16 63 63 GLU GLU C . n C 1 17 LYS 17 64 64 LYS LYS C . n C 1 18 ARG 18 65 65 ARG ARG C . n C 1 19 ASP 19 66 66 ASP ASP C . n C 1 20 LEU 20 67 67 LEU LEU C . n C 1 21 ALA 21 68 68 ALA ALA C . n C 1 22 SER 22 69 69 SER SER C . n C 1 23 ARG 23 70 70 ARG ARG C . n C 1 24 ILE 24 71 71 ILE ILE C . n C 1 25 VAL 25 72 72 VAL VAL C . n C 1 26 SER 26 73 73 SER SER C . n C 1 27 THR 27 74 74 THR THR C . n C 1 28 GLN 28 75 75 GLN GLN C . n C 1 29 HIS 29 76 76 HIS HIS C . n C 1 30 HIS 30 77 77 HIS HIS C . n C 1 31 HIS 31 78 78 HIS HIS C . n C 1 32 HIS 32 79 79 HIS HIS C . n C 1 33 ASP 33 80 80 ASP ASP C . n C 1 34 LEU 34 81 81 LEU LEU C . n C 1 35 SER 35 82 82 SER SER C . n C 1 36 VAL 36 83 83 VAL VAL C . n C 1 37 ALA 37 84 84 ALA ALA C . n C 1 38 THR 38 85 85 THR THR C . n C 1 39 LEU 39 86 86 LEU LEU C . n C 1 40 HIS 40 87 87 HIS HIS C . n C 1 41 VAL 41 88 88 VAL VAL C . n C 1 42 HIS 42 89 89 HIS HIS C . n C 1 43 ILE 43 90 90 ILE ILE C . n C 1 44 ASN 44 91 91 ASN ASN C . n C 1 45 HIS 45 92 92 HIS HIS C . n C 1 46 ASP 46 93 93 ASP ASP C . n C 1 47 ASP 47 94 94 ASP ASP C . n C 1 48 CYS 48 95 95 CYS CYS C . n C 1 49 LEU 49 96 96 LEU LEU C . n C 1 50 GLU 50 97 97 GLU GLU C . n C 1 51 ILE 51 98 98 ILE ILE C . n C 1 52 ALA 52 99 99 ALA ALA C . n C 1 53 VAL 53 100 100 VAL VAL C . n C 1 54 LEU 54 101 101 LEU LEU C . n C 1 55 LYS 55 102 102 LYS LYS C . n C 1 56 GLY 56 103 103 GLY GLY C . n C 1 57 ASP 57 104 104 ASP ASP C . n C 1 58 MET 58 105 105 MET MET C . n C 1 59 GLY 59 106 106 GLY GLY C . n C 1 60 ASP 60 107 107 ASP ASP C . n C 1 61 VAL 61 108 108 VAL VAL C . n C 1 62 GLN 62 109 109 GLN GLN C . n C 1 63 HIS 63 110 110 HIS HIS C . n C 1 64 PHE 64 111 111 PHE PHE C . n C 1 65 ALA 65 112 112 ALA ALA C . n C 1 66 ASP 66 113 113 ASP ASP C . n C 1 67 ASP 67 114 114 ASP ASP C . n C 1 68 VAL 68 115 115 VAL VAL C . n C 1 69 ILE 69 116 116 ILE ILE C . n C 1 70 ALA 70 117 117 ALA ALA C . n C 1 71 GLN 71 118 118 GLN GLN C . n C 1 72 ARG 72 119 119 ARG ARG C . n C 1 73 GLY 73 120 120 GLY GLY C . n C 1 74 VAL 74 121 121 VAL VAL C . n C 1 75 ARG 75 122 122 ARG ARG C . n C 1 76 HIS 76 123 123 HIS HIS C . n C 1 77 GLY 77 124 124 GLY GLY C . n C 1 78 HIS 78 125 125 HIS HIS C . n C 1 79 LEU 79 126 126 LEU LEU C . n C 1 80 GLN 80 127 127 GLN GLN C . n C 1 81 CYS 81 128 128 CYS CYS C . n C 1 82 LEU 82 129 129 LEU LEU C . n C 1 83 PRO 83 130 130 PRO PRO C . n C 1 84 LYS 84 131 131 LYS LYS C . n C 1 85 GLU 85 132 132 GLU GLU C . n C 1 86 ASP 86 133 ? ? ? C . n D 1 1 HIS 1 48 ? ? ? D . n D 1 2 GLY 2 49 ? ? ? D . n D 1 3 THR 3 50 50 THR THR D . n D 1 4 GLN 4 51 51 GLN GLN D . n D 1 5 GLY 5 52 52 GLY GLY D . n D 1 6 PHE 6 53 53 PHE PHE D . n D 1 7 ALA 7 54 54 ALA ALA D . n D 1 8 VAL 8 55 55 VAL VAL D . n D 1 9 LEU 9 56 56 LEU LEU D . n D 1 10 SER 10 57 57 SER SER D . n D 1 11 TYR 11 58 58 TYR TYR D . n D 1 12 VAL 12 59 59 VAL VAL D . n D 1 13 TYR 13 60 60 TYR TYR D . n D 1 14 GLU 14 61 61 GLU GLU D . n D 1 15 HIS 15 62 62 HIS HIS D . n D 1 16 GLU 16 63 63 GLU GLU D . n D 1 17 LYS 17 64 ? ? ? D . n D 1 18 ARG 18 65 ? ? ? D . n D 1 19 ASP 19 66 ? ? ? D . n D 1 20 LEU 20 67 67 LEU LEU D . n D 1 21 ALA 21 68 68 ALA ALA D . n D 1 22 SER 22 69 69 SER SER D . n D 1 23 ARG 23 70 70 ARG ARG D . n D 1 24 ILE 24 71 71 ILE ILE D . n D 1 25 VAL 25 72 72 VAL VAL D . n D 1 26 SER 26 73 73 SER SER D . n D 1 27 THR 27 74 74 THR THR D . n D 1 28 GLN 28 75 75 GLN GLN D . n D 1 29 HIS 29 76 76 HIS HIS D . n D 1 30 HIS 30 77 77 HIS HIS D . n D 1 31 HIS 31 78 78 HIS HIS D . n D 1 32 HIS 32 79 79 HIS HIS D . n D 1 33 ASP 33 80 80 ASP ASP D . n D 1 34 LEU 34 81 81 LEU LEU D . n D 1 35 SER 35 82 82 SER SER D . n D 1 36 VAL 36 83 83 VAL VAL D . n D 1 37 ALA 37 84 84 ALA ALA D . n D 1 38 THR 38 85 85 THR THR D . n D 1 39 LEU 39 86 86 LEU LEU D . n D 1 40 HIS 40 87 87 HIS HIS D . n D 1 41 VAL 41 88 88 VAL VAL D . n D 1 42 HIS 42 89 89 HIS HIS D . n D 1 43 ILE 43 90 90 ILE ILE D . n D 1 44 ASN 44 91 91 ASN ASN D . n D 1 45 HIS 45 92 92 HIS HIS D . n D 1 46 ASP 46 93 93 ASP ASP D . n D 1 47 ASP 47 94 94 ASP ASP D . n D 1 48 CYS 48 95 95 CYS CYS D . n D 1 49 LEU 49 96 96 LEU LEU D . n D 1 50 GLU 50 97 97 GLU GLU D . n D 1 51 ILE 51 98 98 ILE ILE D . n D 1 52 ALA 52 99 99 ALA ALA D . n D 1 53 VAL 53 100 100 VAL VAL D . n D 1 54 LEU 54 101 101 LEU LEU D . n D 1 55 LYS 55 102 102 LYS LYS D . n D 1 56 GLY 56 103 103 GLY GLY D . n D 1 57 ASP 57 104 104 ASP ASP D . n D 1 58 MET 58 105 105 MET MET D . n D 1 59 GLY 59 106 106 GLY GLY D . n D 1 60 ASP 60 107 107 ASP ASP D . n D 1 61 VAL 61 108 108 VAL VAL D . n D 1 62 GLN 62 109 109 GLN GLN D . n D 1 63 HIS 63 110 110 HIS HIS D . n D 1 64 PHE 64 111 111 PHE PHE D . n D 1 65 ALA 65 112 112 ALA ALA D . n D 1 66 ASP 66 113 113 ASP ASP D . n D 1 67 ASP 67 114 114 ASP ASP D . n D 1 68 VAL 68 115 115 VAL VAL D . n D 1 69 ILE 69 116 116 ILE ILE D . n D 1 70 ALA 70 117 117 ALA ALA D . n D 1 71 GLN 71 118 118 GLN GLN D . n D 1 72 ARG 72 119 119 ARG ARG D . n D 1 73 GLY 73 120 120 GLY GLY D . n D 1 74 VAL 74 121 121 VAL VAL D . n D 1 75 ARG 75 122 122 ARG ARG D . n D 1 76 HIS 76 123 123 HIS HIS D . n D 1 77 GLY 77 124 124 GLY GLY D . n D 1 78 HIS 78 125 125 HIS HIS D . n D 1 79 LEU 79 126 126 LEU LEU D . n D 1 80 GLN 80 127 127 GLN GLN D . n D 1 81 CYS 81 128 128 CYS CYS D . n D 1 82 LEU 82 129 129 LEU LEU D . n D 1 83 PRO 83 130 130 PRO PRO D . n D 1 84 LYS 84 131 131 LYS LYS D . n D 1 85 GLU 85 132 ? ? ? D . n D 1 86 ASP 86 133 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CU 1 2 2 CU CU A . F 2 CU 1 4 4 CU CU B . G 2 CU 1 1 1 CU CU C . H 2 CU 1 3 3 CU CU D . I 3 HOH 1 134 3 HOH HOH A . I 3 HOH 2 135 4 HOH HOH A . I 3 HOH 3 136 13 HOH HOH A . I 3 HOH 4 137 14 HOH HOH A . I 3 HOH 5 138 17 HOH HOH A . I 3 HOH 6 139 19 HOH HOH A . I 3 HOH 7 140 23 HOH HOH A . I 3 HOH 8 141 24 HOH HOH A . I 3 HOH 9 142 25 HOH HOH A . I 3 HOH 10 143 27 HOH HOH A . I 3 HOH 11 144 39 HOH HOH A . I 3 HOH 12 145 41 HOH HOH A . I 3 HOH 13 146 43 HOH HOH A . I 3 HOH 14 147 46 HOH HOH A . I 3 HOH 15 148 47 HOH HOH A . I 3 HOH 16 149 60 HOH HOH A . I 3 HOH 17 150 64 HOH HOH A . I 3 HOH 18 151 65 HOH HOH A . I 3 HOH 19 152 70 HOH HOH A . I 3 HOH 20 153 71 HOH HOH A . I 3 HOH 21 154 77 HOH HOH A . I 3 HOH 22 155 78 HOH HOH A . I 3 HOH 23 156 79 HOH HOH A . I 3 HOH 24 157 82 HOH HOH A . I 3 HOH 25 158 83 HOH HOH A . I 3 HOH 26 159 85 HOH HOH A . I 3 HOH 27 160 94 HOH HOH A . I 3 HOH 28 161 98 HOH HOH A . I 3 HOH 29 162 102 HOH HOH A . I 3 HOH 30 163 105 HOH HOH A . I 3 HOH 31 164 107 HOH HOH A . I 3 HOH 32 165 108 HOH HOH A . I 3 HOH 33 166 112 HOH HOH A . I 3 HOH 34 167 117 HOH HOH A . I 3 HOH 35 168 118 HOH HOH A . I 3 HOH 36 169 119 HOH HOH A . I 3 HOH 37 170 122 HOH HOH A . I 3 HOH 38 171 124 HOH HOH A . I 3 HOH 39 172 134 HOH HOH A . I 3 HOH 40 173 138 HOH HOH A . I 3 HOH 41 174 147 HOH HOH A . I 3 HOH 42 175 161 HOH HOH A . I 3 HOH 43 176 162 HOH HOH A . I 3 HOH 44 177 163 HOH HOH A . I 3 HOH 45 178 165 HOH HOH A . J 3 HOH 1 134 2 HOH HOH B . J 3 HOH 2 135 7 HOH HOH B . J 3 HOH 3 136 8 HOH HOH B . J 3 HOH 4 137 15 HOH HOH B . J 3 HOH 5 138 16 HOH HOH B . J 3 HOH 6 139 20 HOH HOH B . J 3 HOH 7 140 21 HOH HOH B . J 3 HOH 8 141 22 HOH HOH B . J 3 HOH 9 142 30 HOH HOH B . J 3 HOH 10 143 34 HOH HOH B . J 3 HOH 11 144 36 HOH HOH B . J 3 HOH 12 145 40 HOH HOH B . J 3 HOH 13 146 45 HOH HOH B . J 3 HOH 14 147 48 HOH HOH B . J 3 HOH 15 148 50 HOH HOH B . J 3 HOH 16 149 51 HOH HOH B . J 3 HOH 17 150 53 HOH HOH B . J 3 HOH 18 151 54 HOH HOH B . J 3 HOH 19 152 56 HOH HOH B . J 3 HOH 20 153 57 HOH HOH B . J 3 HOH 21 154 67 HOH HOH B . J 3 HOH 22 155 72 HOH HOH B . J 3 HOH 23 156 76 HOH HOH B . J 3 HOH 24 157 80 HOH HOH B . J 3 HOH 25 158 81 HOH HOH B . J 3 HOH 26 159 88 HOH HOH B . J 3 HOH 27 160 91 HOH HOH B . J 3 HOH 28 161 103 HOH HOH B . J 3 HOH 29 162 106 HOH HOH B . J 3 HOH 30 163 109 HOH HOH B . J 3 HOH 31 164 111 HOH HOH B . J 3 HOH 32 165 114 HOH HOH B . J 3 HOH 33 166 115 HOH HOH B . J 3 HOH 34 167 116 HOH HOH B . J 3 HOH 35 168 126 HOH HOH B . J 3 HOH 36 169 128 HOH HOH B . J 3 HOH 37 170 129 HOH HOH B . J 3 HOH 38 171 130 HOH HOH B . J 3 HOH 39 172 132 HOH HOH B . J 3 HOH 40 173 135 HOH HOH B . J 3 HOH 41 174 137 HOH HOH B . J 3 HOH 42 175 141 HOH HOH B . J 3 HOH 43 176 142 HOH HOH B . J 3 HOH 44 177 144 HOH HOH B . J 3 HOH 45 178 145 HOH HOH B . J 3 HOH 46 179 151 HOH HOH B . J 3 HOH 47 180 152 HOH HOH B . J 3 HOH 48 181 154 HOH HOH B . J 3 HOH 49 182 156 HOH HOH B . J 3 HOH 50 183 157 HOH HOH B . J 3 HOH 51 184 160 HOH HOH B . J 3 HOH 52 185 170 HOH HOH B . K 3 HOH 1 134 1 HOH HOH C . K 3 HOH 2 135 6 HOH HOH C . K 3 HOH 3 136 10 HOH HOH C . K 3 HOH 4 137 18 HOH HOH C . K 3 HOH 5 138 28 HOH HOH C . K 3 HOH 6 139 29 HOH HOH C . K 3 HOH 7 140 32 HOH HOH C . K 3 HOH 8 141 35 HOH HOH C . K 3 HOH 9 142 37 HOH HOH C . K 3 HOH 10 143 42 HOH HOH C . K 3 HOH 11 144 55 HOH HOH C . K 3 HOH 12 145 58 HOH HOH C . K 3 HOH 13 146 61 HOH HOH C . K 3 HOH 14 147 62 HOH HOH C . K 3 HOH 15 148 66 HOH HOH C . K 3 HOH 16 149 68 HOH HOH C . K 3 HOH 17 150 69 HOH HOH C . K 3 HOH 18 151 74 HOH HOH C . K 3 HOH 19 152 75 HOH HOH C . K 3 HOH 20 153 84 HOH HOH C . K 3 HOH 21 154 87 HOH HOH C . K 3 HOH 22 155 90 HOH HOH C . K 3 HOH 23 156 92 HOH HOH C . K 3 HOH 24 157 93 HOH HOH C . K 3 HOH 25 158 96 HOH HOH C . K 3 HOH 26 159 97 HOH HOH C . K 3 HOH 27 160 100 HOH HOH C . K 3 HOH 28 161 104 HOH HOH C . K 3 HOH 29 162 110 HOH HOH C . K 3 HOH 30 163 120 HOH HOH C . K 3 HOH 31 164 121 HOH HOH C . K 3 HOH 32 165 125 HOH HOH C . K 3 HOH 33 166 127 HOH HOH C . K 3 HOH 34 167 131 HOH HOH C . K 3 HOH 35 168 133 HOH HOH C . K 3 HOH 36 169 136 HOH HOH C . K 3 HOH 37 170 139 HOH HOH C . K 3 HOH 38 171 140 HOH HOH C . K 3 HOH 39 172 143 HOH HOH C . K 3 HOH 40 173 149 HOH HOH C . K 3 HOH 41 174 150 HOH HOH C . K 3 HOH 42 175 155 HOH HOH C . K 3 HOH 43 176 158 HOH HOH C . K 3 HOH 44 177 164 HOH HOH C . K 3 HOH 45 178 166 HOH HOH C . K 3 HOH 46 179 167 HOH HOH C . K 3 HOH 47 180 168 HOH HOH C . K 3 HOH 48 181 171 HOH HOH C . L 3 HOH 1 134 5 HOH HOH D . L 3 HOH 2 135 9 HOH HOH D . L 3 HOH 3 136 11 HOH HOH D . L 3 HOH 4 137 12 HOH HOH D . L 3 HOH 5 138 26 HOH HOH D . L 3 HOH 6 139 31 HOH HOH D . L 3 HOH 7 140 33 HOH HOH D . L 3 HOH 8 141 38 HOH HOH D . L 3 HOH 9 142 44 HOH HOH D . L 3 HOH 10 143 49 HOH HOH D . L 3 HOH 11 144 52 HOH HOH D . L 3 HOH 12 145 59 HOH HOH D . L 3 HOH 13 146 63 HOH HOH D . L 3 HOH 14 147 73 HOH HOH D . L 3 HOH 15 148 86 HOH HOH D . L 3 HOH 16 149 89 HOH HOH D . L 3 HOH 17 150 95 HOH HOH D . L 3 HOH 18 151 99 HOH HOH D . L 3 HOH 19 152 101 HOH HOH D . L 3 HOH 20 153 113 HOH HOH D . L 3 HOH 21 154 123 HOH HOH D . L 3 HOH 22 155 146 HOH HOH D . L 3 HOH 23 156 148 HOH HOH D . L 3 HOH 24 157 153 HOH HOH D . L 3 HOH 25 158 159 HOH HOH D . L 3 HOH 26 159 169 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1 A,B,E,F,I,J 3 1 C,D,G,H,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7620 ? 2 'ABSA (A^2)' 1750 ? 3 'ABSA (A^2)' 1640 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 40 ? A HIS 87 ? 1_555 CU ? E CU . ? A CU 2 ? 1_555 ND1 ? A HIS 42 ? A HIS 89 ? 1_555 85.8 ? 2 NE2 ? A HIS 40 ? A HIS 87 ? 1_555 CU ? E CU . ? A CU 2 ? 1_555 NE2 ? C HIS 29 ? C HIS 76 ? 1_555 171.5 ? 3 ND1 ? A HIS 42 ? A HIS 89 ? 1_555 CU ? E CU . ? A CU 2 ? 1_555 NE2 ? C HIS 29 ? C HIS 76 ? 1_555 87.9 ? 4 NE2 ? A HIS 29 ? A HIS 76 ? 1_555 CU ? G CU . ? C CU 1 ? 1_555 NE2 ? C HIS 40 ? C HIS 87 ? 1_555 166.1 ? 5 NE2 ? B HIS 40 ? B HIS 87 ? 1_555 CU ? F CU . ? B CU 4 ? 1_555 ND1 ? B HIS 42 ? B HIS 89 ? 1_555 87.4 ? 6 NE2 ? B HIS 40 ? B HIS 87 ? 1_555 CU ? F CU . ? B CU 4 ? 1_555 NE2 ? D HIS 29 ? D HIS 76 ? 1_555 171.0 ? 7 ND1 ? B HIS 42 ? B HIS 89 ? 1_555 CU ? F CU . ? B CU 4 ? 1_555 NE2 ? D HIS 29 ? D HIS 76 ? 1_555 85.1 ? 8 NE2 ? B HIS 29 ? B HIS 76 ? 1_555 CU ? H CU . ? D CU 3 ? 1_555 NE2 ? D HIS 40 ? D HIS 87 ? 1_555 162.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.value' 15 4 'Structure model' '_struct_conn.pdbx_dist_value' 16 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 5 XFIT . ? ? ? ? 'data reduction' ? ? ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 177 ? ? O B HOH 180 ? ? 2.02 2 1 OD1 C ASP 113 ? ? O C HOH 180 ? ? 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 78 ? ? -101.19 55.96 2 1 LYS B 64 ? ? -68.23 77.42 3 1 ARG B 65 ? ? -147.74 45.56 4 1 VAL B 83 ? ? -95.23 -69.05 5 1 VAL C 83 ? ? -98.07 -67.25 6 1 VAL D 83 ? ? -94.46 -62.73 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ARG _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 65 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 66 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 139.22 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 63 ? CG ? A GLU 16 CG 2 1 Y 1 A GLU 63 ? CD ? A GLU 16 CD 3 1 Y 1 A GLU 63 ? OE1 ? A GLU 16 OE1 4 1 Y 1 A GLU 63 ? OE2 ? A GLU 16 OE2 5 1 Y 1 A ARG 119 ? CG ? A ARG 72 CG 6 1 Y 1 A ARG 119 ? CD ? A ARG 72 CD 7 1 Y 1 A ARG 119 ? NE ? A ARG 72 NE 8 1 Y 1 A ARG 119 ? CZ ? A ARG 72 CZ 9 1 Y 1 A ARG 119 ? NH1 ? A ARG 72 NH1 10 1 Y 1 A ARG 119 ? NH2 ? A ARG 72 NH2 11 1 Y 1 B ARG 65 ? CG ? B ARG 18 CG 12 1 Y 1 B ARG 65 ? CD ? B ARG 18 CD 13 1 Y 1 B ARG 65 ? NE ? B ARG 18 NE 14 1 Y 1 B ARG 65 ? CZ ? B ARG 18 CZ 15 1 Y 1 B ARG 65 ? NH1 ? B ARG 18 NH1 16 1 Y 1 B ARG 65 ? NH2 ? B ARG 18 NH2 17 1 Y 1 B ASP 66 ? CG ? B ASP 19 CG 18 1 Y 1 B ASP 66 ? OD1 ? B ASP 19 OD1 19 1 Y 1 B ASP 66 ? OD2 ? B ASP 19 OD2 20 1 Y 1 B ARG 70 ? CG ? B ARG 23 CG 21 1 Y 1 B ARG 70 ? CD ? B ARG 23 CD 22 1 Y 1 B ARG 70 ? NE ? B ARG 23 NE 23 1 Y 1 B ARG 70 ? CZ ? B ARG 23 CZ 24 1 Y 1 B ARG 70 ? NH1 ? B ARG 23 NH1 25 1 Y 1 B ARG 70 ? NH2 ? B ARG 23 NH2 26 1 Y 1 B ARG 119 ? CG ? B ARG 72 CG 27 1 Y 1 B ARG 119 ? CD ? B ARG 72 CD 28 1 Y 1 B ARG 119 ? NE ? B ARG 72 NE 29 1 Y 1 B ARG 119 ? CZ ? B ARG 72 CZ 30 1 Y 1 B ARG 119 ? NH1 ? B ARG 72 NH1 31 1 Y 1 B ARG 119 ? NH2 ? B ARG 72 NH2 32 1 Y 1 C GLN 51 ? CG ? C GLN 4 CG 33 1 Y 1 C GLN 51 ? CD ? C GLN 4 CD 34 1 Y 1 C GLN 51 ? OE1 ? C GLN 4 OE1 35 1 Y 1 C GLN 51 ? NE2 ? C GLN 4 NE2 36 1 Y 1 D THR 50 ? OG1 ? D THR 3 OG1 37 1 Y 1 D THR 50 ? CG2 ? D THR 3 CG2 38 1 Y 1 D ARG 70 ? CG ? D ARG 23 CG 39 1 Y 1 D ARG 70 ? CD ? D ARG 23 CD 40 1 Y 1 D ARG 70 ? NE ? D ARG 23 NE 41 1 Y 1 D ARG 70 ? CZ ? D ARG 23 CZ 42 1 Y 1 D ARG 70 ? NH1 ? D ARG 23 NH1 43 1 Y 1 D ARG 70 ? NH2 ? D ARG 23 NH2 44 1 Y 1 D HIS 110 ? CG ? D HIS 63 CG 45 1 Y 1 D HIS 110 ? ND1 ? D HIS 63 ND1 46 1 Y 1 D HIS 110 ? CD2 ? D HIS 63 CD2 47 1 Y 1 D HIS 110 ? CE1 ? D HIS 63 CE1 48 1 Y 1 D HIS 110 ? NE2 ? D HIS 63 NE2 49 1 Y 1 D ASP 113 ? CG ? D ASP 66 CG 50 1 Y 1 D ASP 113 ? OD1 ? D ASP 66 OD1 51 1 Y 1 D ASP 113 ? OD2 ? D ASP 66 OD2 52 1 Y 1 D ASP 114 ? CG ? D ASP 67 CG 53 1 Y 1 D ASP 114 ? OD1 ? D ASP 67 OD1 54 1 Y 1 D ASP 114 ? OD2 ? D ASP 67 OD2 55 1 Y 1 D ARG 119 ? CG ? D ARG 72 CG 56 1 Y 1 D ARG 119 ? CD ? D ARG 72 CD 57 1 Y 1 D ARG 119 ? NE ? D ARG 72 NE 58 1 Y 1 D ARG 119 ? CZ ? D ARG 72 CZ 59 1 Y 1 D ARG 119 ? NH1 ? D ARG 72 NH1 60 1 Y 1 D ARG 119 ? NH2 ? D ARG 72 NH2 61 1 Y 1 D LYS 131 ? CG ? D LYS 84 CG 62 1 Y 1 D LYS 131 ? CD ? D LYS 84 CD 63 1 Y 1 D LYS 131 ? CE ? D LYS 84 CE 64 1 Y 1 D LYS 131 ? NZ ? D LYS 84 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 48 ? A HIS 1 2 1 Y 1 A GLY 49 ? A GLY 2 3 1 Y 1 A ASP 133 ? A ASP 86 4 1 Y 1 B HIS 48 ? B HIS 1 5 1 Y 1 B GLY 49 ? B GLY 2 6 1 Y 1 B ASP 133 ? B ASP 86 7 1 Y 1 C HIS 48 ? C HIS 1 8 1 Y 1 C GLY 49 ? C GLY 2 9 1 Y 1 C THR 50 ? C THR 3 10 1 Y 1 C ASP 133 ? C ASP 86 11 1 Y 1 D HIS 48 ? D HIS 1 12 1 Y 1 D GLY 49 ? D GLY 2 13 1 Y 1 D LYS 64 ? D LYS 17 14 1 Y 1 D ARG 65 ? D ARG 18 15 1 Y 1 D ASP 66 ? D ASP 19 16 1 Y 1 D GLU 132 ? D GLU 85 17 1 Y 1 D ASP 133 ? D ASP 86 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CU CU CU N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TYR N N N N 322 TYR CA C N S 323 TYR C C N N 324 TYR O O N N 325 TYR CB C N N 326 TYR CG C Y N 327 TYR CD1 C Y N 328 TYR CD2 C Y N 329 TYR CE1 C Y N 330 TYR CE2 C Y N 331 TYR CZ C Y N 332 TYR OH O N N 333 TYR OXT O N N 334 TYR H H N N 335 TYR H2 H N N 336 TYR HA H N N 337 TYR HB2 H N N 338 TYR HB3 H N N 339 TYR HD1 H N N 340 TYR HD2 H N N 341 TYR HE1 H N N 342 TYR HE2 H N N 343 TYR HH H N N 344 TYR HXT H N N 345 VAL N N N N 346 VAL CA C N S 347 VAL C C N N 348 VAL O O N N 349 VAL CB C N N 350 VAL CG1 C N N 351 VAL CG2 C N N 352 VAL OXT O N N 353 VAL H H N N 354 VAL H2 H N N 355 VAL HA H N N 356 VAL HB H N N 357 VAL HG11 H N N 358 VAL HG12 H N N 359 VAL HG13 H N N 360 VAL HG21 H N N 361 VAL HG22 H N N 362 VAL HG23 H N N 363 VAL HXT H N N 364 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TYR N CA sing N N 306 TYR N H sing N N 307 TYR N H2 sing N N 308 TYR CA C sing N N 309 TYR CA CB sing N N 310 TYR CA HA sing N N 311 TYR C O doub N N 312 TYR C OXT sing N N 313 TYR CB CG sing N N 314 TYR CB HB2 sing N N 315 TYR CB HB3 sing N N 316 TYR CG CD1 doub Y N 317 TYR CG CD2 sing Y N 318 TYR CD1 CE1 sing Y N 319 TYR CD1 HD1 sing N N 320 TYR CD2 CE2 doub Y N 321 TYR CD2 HD2 sing N N 322 TYR CE1 CZ doub Y N 323 TYR CE1 HE1 sing N N 324 TYR CE2 CZ sing Y N 325 TYR CE2 HE2 sing N N 326 TYR CZ OH sing N N 327 TYR OH HH sing N N 328 TYR OXT HXT sing N N 329 VAL N CA sing N N 330 VAL N H sing N N 331 VAL N H2 sing N N 332 VAL CA C sing N N 333 VAL CA CB sing N N 334 VAL CA HA sing N N 335 VAL C O doub N N 336 VAL C OXT sing N N 337 VAL CB CG1 sing N N 338 VAL CB CG2 sing N N 339 VAL CB HB sing N N 340 VAL CG1 HG11 sing N N 341 VAL CG1 HG12 sing N N 342 VAL CG1 HG13 sing N N 343 VAL CG2 HG21 sing N N 344 VAL CG2 HG22 sing N N 345 VAL CG2 HG23 sing N N 346 VAL OXT HXT sing N N 347 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COPPER (II) ION' CU 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Q5Y _pdbx_initial_refinement_model.details 'The tetramer of nickel-bound c-terminal domain of NikR, 1Q5Y' #