HEADER TRANSCRIPTION 11-DEC-07 3BLQ TITLE CRYSTAL STRUCTURE OF HUMAN CDK9/CYCLINT1 IN COMPLEX WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN KINASE 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-330; COMPND 5 SYNONYM: CYCLIN-DEPENDENT KINASE 9, SERINE/THREONINE-PROTEIN KINASE COMPND 6 PITALRE, C-2K, CELL DIVISION CYCLE 2-LIKE PROTEIN KINASE 4; COMPND 7 EC: 2.7.11.22, 2.7.11.23; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CYCLIN-T1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 2-259; COMPND 13 SYNONYM: CYCT1, CYCLIN-T; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK9; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULO VIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVL1392; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: CCNT1; SOURCE 17 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 18 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULO VIRUS; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PVL1392 KEYWDS TRANSCRIPTIONAL CDK-CYCLIN COMPLEX, PHOSPHORYLATED, IN COMPLEX WITH KEYWDS 2 ATP, ALTERNATIVE SPLICING, ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, KEYWDS 3 NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, SERINE/THREONINE-PROTEIN KEYWDS 4 KINASE, TRANSCRIPTION REGULATION, TRANSFERASE, ACETYLATION, CELL KEYWDS 5 CYCLE, CELL DIVISION, COILED COIL, HOST-VIRUS INTERACTION, KEYWDS 6 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.BAUMLI,G.LOLLI,E.D.LOWE,L.N.JOHNSON REVDAT 8 20-NOV-24 3BLQ 1 REMARK REVDAT 7 01-NOV-23 3BLQ 1 REMARK REVDAT 6 10-NOV-21 3BLQ 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 3BLQ 1 REMARK REVDAT 4 19-MAY-09 3BLQ 1 REMARK REVDAT 3 24-FEB-09 3BLQ 1 VERSN REVDAT 2 12-AUG-08 3BLQ 1 JRNL REVDAT 1 01-JUL-08 3BLQ 0 JRNL AUTH S.BAUMLI,G.LOLLI,E.D.LOWE,S.TROIANI,L.RUSCONI,A.N.BULLOCK, JRNL AUTH 2 J.E.DEBRECZENI,S.KNAPP,L.N.JOHNSON JRNL TITL THE STRUCTURE OF P-TEFB (CDK9/CYCLIN T1), ITS COMPLEX WITH JRNL TITL 2 FLAVOPIRIDOL AND REGULATION BY PHOSPHORYLATION JRNL REF EMBO J. V. 27 1907 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 18566585 JRNL DOI 10.1038/EMBOJ.2008.121 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5020 - 12.6070 0.82 439 0 0.2290 0.0000 REMARK 3 2 12.6070 - 10.1390 0.93 493 0 0.1340 0.0000 REMARK 3 3 10.1390 - 8.8980 0.93 499 0 0.1230 0.0000 REMARK 3 4 8.8980 - 8.1030 0.95 490 0 0.1280 0.0000 REMARK 3 5 8.1030 - 7.5320 0.93 490 0 0.1480 0.0000 REMARK 3 6 7.5320 - 7.0950 0.95 531 0 0.1580 0.0000 REMARK 3 7 7.0950 - 6.7440 0.95 510 0 0.1700 0.0000 REMARK 3 8 6.7440 - 6.4540 0.91 473 0 0.1800 0.0000 REMARK 3 9 6.4540 - 6.2080 0.95 486 0 0.1770 0.0000 REMARK 3 10 6.2080 - 5.9950 0.95 508 0 0.1750 0.0000 REMARK 3 11 5.9950 - 5.8090 0.94 499 0 0.1600 0.0000 REMARK 3 12 5.8090 - 5.6440 0.94 500 0 0.1630 0.0000 REMARK 3 13 5.6440 - 5.4970 0.96 536 0 0.1700 0.0000 REMARK 3 14 5.4970 - 5.3640 0.95 500 0 0.1400 0.0000 REMARK 3 15 5.3640 - 5.2420 0.95 462 0 0.1700 0.0000 REMARK 3 16 5.2420 - 5.1310 0.96 564 0 0.1410 0.0000 REMARK 3 17 5.1310 - 5.0290 0.92 475 0 0.1400 0.0000 REMARK 3 18 5.0290 - 4.9350 0.95 481 0 0.1280 0.0000 REMARK 3 19 4.9350 - 4.8470 0.94 549 0 0.1360 0.0000 REMARK 3 20 4.8470 - 4.7650 0.95 444 0 0.1190 0.0000 REMARK 3 21 4.7650 - 4.6890 0.93 529 0 0.1390 0.0000 REMARK 3 22 4.6890 - 4.6170 0.93 505 0 0.1230 0.0000 REMARK 3 23 4.6170 - 4.5490 0.95 474 0 0.1370 0.0000 REMARK 3 24 4.5490 - 4.4850 0.95 539 0 0.1240 0.0000 REMARK 3 25 4.4850 - 4.4250 0.96 518 0 0.1290 0.0000 REMARK 3 26 4.4250 - 4.3670 0.94 455 0 0.1430 0.0000 REMARK 3 27 4.3670 - 4.3130 0.96 555 0 0.1270 0.0000 REMARK 3 28 4.3130 - 4.2610 0.93 497 0 0.1340 0.0000 REMARK 3 29 4.2610 - 4.2120 0.96 489 0 0.1420 0.0000 REMARK 3 30 4.2120 - 4.1650 0.95 495 0 0.1250 0.0000 REMARK 3 31 4.1650 - 4.1200 0.96 531 0 0.1300 0.0000 REMARK 3 32 4.1200 - 4.0760 0.93 497 0 0.1600 0.0000 REMARK 3 33 4.0760 - 4.0350 0.95 442 0 0.1320 0.0000 REMARK 3 34 4.0350 - 3.9950 0.94 563 0 0.1290 0.0000 REMARK 3 35 3.9950 - 3.9570 0.93 483 0 0.1550 0.0000 REMARK 3 36 3.9570 - 3.9200 0.96 523 0 0.1490 0.0000 REMARK 3 37 3.9200 - 3.8840 0.95 462 0 0.1530 0.0000 REMARK 3 38 3.8840 - 3.8500 0.92 503 0 0.1560 0.0000 REMARK 3 39 3.8500 - 3.8170 0.95 513 0 0.1530 0.0000 REMARK 3 40 3.8170 - 3.7850 0.95 521 0 0.1590 0.0000 REMARK 3 41 3.7850 - 3.7540 0.95 461 0 0.1580 0.0000 REMARK 3 42 3.7540 - 3.7240 0.97 556 0 0.1670 0.0000 REMARK 3 43 3.7240 - 3.6950 0.92 498 0 0.1530 0.0000 REMARK 3 44 3.6950 - 3.6670 0.93 507 0 0.1790 0.0000 REMARK 3 45 3.6670 - 3.6390 0.95 486 0 0.1480 0.0000 REMARK 3 46 3.6390 - 3.6130 0.95 476 0 0.1580 0.0000 REMARK 3 47 3.6130 - 3.5870 0.96 520 0 0.1630 0.0000 REMARK 3 48 3.5870 - 3.5620 0.95 584 0 0.1710 0.0000 REMARK 3 49 3.5620 - 3.5380 0.91 428 0 0.1760 0.0000 REMARK 3 50 3.5380 - 3.5140 0.91 493 0 0.1800 0.0000 REMARK 3 51 3.5140 - 3.4910 0.91 441 0 0.1730 0.0000 REMARK 3 52 3.4910 - 3.4680 0.94 546 0 0.1770 0.0000 REMARK 3 53 3.4680 - 3.4460 0.97 512 0 0.1860 0.0000 REMARK 3 54 3.4460 - 3.4250 0.94 532 0 0.1800 0.0000 REMARK 3 55 3.4250 - 3.4040 0.96 483 0 0.1790 0.0000 REMARK 3 56 3.4040 - 3.3840 0.94 478 0 0.1950 0.0000 REMARK 3 57 3.3840 - 3.3640 0.93 504 0 0.2080 0.0000 REMARK 3 58 3.3640 - 3.3450 0.94 530 0 0.1970 0.0000 REMARK 3 59 3.3450 - 3.3260 0.95 501 0 0.1930 0.0000 REMARK 3 60 3.3260 - 3.3070 0.96 468 0 0.2180 0.0000 REMARK 3 61 3.3070 - 3.2890 0.94 475 0 0.2190 0.0000 REMARK 3 62 3.2890 - 3.2710 0.95 547 0 0.1960 0.0000 REMARK 3 63 3.2710 - 3.2540 0.96 526 0 0.1940 0.0000 REMARK 3 64 3.2540 - 3.2370 0.95 502 0 0.2160 0.0000 REMARK 3 65 3.2370 - 3.2200 0.95 502 0 0.2070 0.0000 REMARK 3 66 3.2200 - 3.2040 0.95 475 0 0.1990 0.0000 REMARK 3 67 3.2040 - 3.1880 0.94 503 0 0.2270 0.0000 REMARK 3 68 3.1880 - 3.1720 0.93 509 0 0.2240 0.0000 REMARK 3 69 3.1720 - 3.1570 0.95 494 0 0.2060 0.0000 REMARK 3 70 3.1570 - 3.1420 0.94 529 0 0.1920 0.0000 REMARK 3 71 3.1420 - 3.1270 0.93 511 0 0.2380 0.0000 REMARK 3 72 3.1270 - 3.1120 0.94 495 0 0.2180 0.0000 REMARK 3 73 3.1120 - 3.0980 0.96 480 0 0.2350 0.0000 REMARK 3 74 3.0980 - 3.0840 0.95 490 0 0.2100 0.0000 REMARK 3 75 3.0840 - 3.0700 0.92 532 0 0.2200 0.0000 REMARK 3 76 3.0700 - 3.0570 0.94 470 0 0.2530 0.0000 REMARK 3 77 3.0570 - 3.0430 0.94 522 0 0.2330 0.0000 REMARK 3 78 3.0430 - 3.0300 0.95 488 0 0.2480 0.0000 REMARK 3 79 3.0300 - 3.0180 0.93 545 0 0.2300 0.0000 REMARK 3 80 3.0180 - 3.0050 0.97 490 0 0.2350 0.0000 REMARK 3 81 3.0050 - 2.9930 0.94 447 0 0.2630 0.0000 REMARK 3 82 2.9930 - 2.9800 0.94 531 0 0.2460 0.0000 REMARK 3 83 2.9800 - 2.9680 0.94 495 0 0.2790 0.0000 REMARK 3 84 2.9680 - 2.9570 0.94 513 0 0.2490 0.0000 REMARK 3 85 2.9570 - 2.9450 0.92 487 0 0.2580 0.0000 REMARK 3 86 2.9450 - 2.9340 0.93 511 0 0.2620 0.0000 REMARK 3 87 2.9340 - 2.9220 0.96 511 0 0.2680 0.0000 REMARK 3 88 2.9220 - 2.9110 0.95 470 0 0.2660 0.0000 REMARK 3 89 2.9110 - 2.9000 0.95 517 0 0.2520 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 47.84 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05600 REMARK 3 B22 (A**2) : -1.05600 REMARK 3 B33 (A**2) : 2.11300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 NULL REMARK 3 ANGLE : 0.745 NULL REMARK 3 CHIRALITY : 0.055 NULL REMARK 3 PLANARITY : 0.003 NULL REMARK 3 DIHEDRAL : 11.205 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 46.8817 -17.5246 -1.5063 REMARK 3 T TENSOR REMARK 3 T11: 0.3306 T22: 0.2130 REMARK 3 T33: 0.4583 T12: -0.0056 REMARK 3 T13: -0.0935 T23: 0.0706 REMARK 3 L TENSOR REMARK 3 L11: 1.4354 L22: 1.2988 REMARK 3 L33: 2.6247 L12: -0.0773 REMARK 3 L13: 0.2117 L23: 0.4837 REMARK 3 S TENSOR REMARK 3 S11: 0.2677 S12: 0.0668 S13: -0.6278 REMARK 3 S21: 0.2104 S22: -0.1728 S23: -0.1872 REMARK 3 S31: 0.7499 S32: 0.1817 S33: -0.0962 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 21.4156 3.4648 -20.4795 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.3008 REMARK 3 T33: 0.2741 T12: -0.0113 REMARK 3 T13: -0.0270 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 2.1487 L22: 1.1302 REMARK 3 L33: 1.2323 L12: -0.4348 REMARK 3 L13: -0.1180 L23: 0.2001 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.2440 S13: 0.2651 REMARK 3 S21: 0.0105 S22: 0.0855 S23: -0.2873 REMARK 3 S31: -0.0902 S32: 0.1227 S33: -0.1151 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BLQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 32.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.51200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 3BLH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 20% PEG 1000, 0.5M NACL, REMARK 280 4MM TCEP, 2MM AMPPNP, 2.4MM MGCL2, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 86.56500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.97833 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.88000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 86.56500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 49.97833 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.88000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 86.56500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 49.97833 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.88000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 99.95665 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 63.76000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 99.95665 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 63.76000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 99.95665 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 63.76000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 ASP A 6 REMARK 465 LYS A 88 REMARK 465 ALA A 89 REMARK 465 SER A 90 REMARK 465 PRO A 91 REMARK 465 TYR A 92 REMARK 465 ASN A 93 REMARK 465 ARG A 94 REMARK 465 CYS A 95 REMARK 465 LYS A 96 REMARK 465 GLY A 97 REMARK 465 LEU A 176 REMARK 465 ALA A 177 REMARK 465 LYS A 178 REMARK 465 ASN A 179 REMARK 465 SER A 180 REMARK 465 GLN A 181 REMARK 465 PRO A 182 REMARK 465 LYS A 269 REMARK 465 GLY A 270 REMARK 465 GLN A 271 REMARK 465 LYS A 272 REMARK 465 ARG A 273 REMARK 465 LYS A 274 REMARK 465 GLY A 326 REMARK 465 MET A 327 REMARK 465 LEU A 328 REMARK 465 SER A 329 REMARK 465 THR A 330 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 5 REMARK 465 LYS B 6 REMARK 465 ASN B 7 REMARK 465 ASN B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 10 51.35 -145.63 REMARK 500 PRO A 11 -37.75 -38.94 REMARK 500 LYS A 18 -47.58 -27.85 REMARK 500 ALA A 23 143.39 173.32 REMARK 500 GLU A 53 -54.62 -133.23 REMARK 500 VAL A 79 139.43 -34.64 REMARK 500 ARG A 86 -163.22 -124.76 REMARK 500 ASP A 167 82.78 61.72 REMARK 500 VAL A 190 129.25 75.14 REMARK 500 ARG A 204 14.77 -140.30 REMARK 500 ASN A 232 -34.04 -134.89 REMARK 500 GLN A 243 34.56 -82.00 REMARK 500 LEU A 244 -42.30 -147.82 REMARK 500 PRO A 250 -9.79 -56.96 REMARK 500 PRO A 254 116.82 -37.02 REMARK 500 ASN A 258 -31.74 -35.66 REMARK 500 LEU A 261 5.87 -60.31 REMARK 500 LEU A 265 82.83 82.93 REMARK 500 ARG A 284 -59.23 75.65 REMARK 500 LEU A 296 54.14 -93.28 REMARK 500 ASP B 30 144.80 -38.41 REMARK 500 ILE B 72 -44.17 -130.29 REMARK 500 THR B 121 3.18 -62.02 REMARK 500 LEU B 163 21.66 -75.79 REMARK 500 VAL B 164 12.75 -140.52 REMARK 500 ARG B 165 60.36 37.69 REMARK 500 SER B 215 154.83 -45.72 REMARK 500 VAL B 225 -32.15 -135.73 REMARK 500 ASN B 250 -9.11 66.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 260 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BLH RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN CDK9/CYCLINT1 REMARK 900 RELATED ID: 3BLR RELATED DB: PDB DBREF 3BLQ A 2 330 UNP P50750 CDK9_HUMAN 2 330 DBREF 3BLQ B 2 259 UNP O60563 CCNT1_HUMAN 2 259 SEQADV 3BLQ GLY A 0 UNP P50750 EXPRESSION TAG SEQADV 3BLQ PRO A 1 UNP P50750 EXPRESSION TAG SEQADV 3BLQ GLY B 0 UNP O60563 EXPRESSION TAG SEQADV 3BLQ PRO B 1 UNP O60563 EXPRESSION TAG SEQADV 3BLQ ARG B 77 UNP O60563 GLN 77 ENGINEERED MUTATION SEQADV 3BLQ GLY B 96 UNP O60563 GLU 96 ENGINEERED MUTATION SEQADV 3BLQ LEU B 241 UNP O60563 PHE 241 ENGINEERED MUTATION SEQRES 1 A 331 GLY PRO ALA LYS GLN TYR ASP SER VAL GLU CYS PRO PHE SEQRES 2 A 331 CYS ASP GLU VAL SER LYS TYR GLU LYS LEU ALA LYS ILE SEQRES 3 A 331 GLY GLN GLY THR PHE GLY GLU VAL PHE LYS ALA ARG HIS SEQRES 4 A 331 ARG LYS THR GLY GLN LYS VAL ALA LEU LYS LYS VAL LEU SEQRES 5 A 331 MET GLU ASN GLU LYS GLU GLY PHE PRO ILE THR ALA LEU SEQRES 6 A 331 ARG GLU ILE LYS ILE LEU GLN LEU LEU LYS HIS GLU ASN SEQRES 7 A 331 VAL VAL ASN LEU ILE GLU ILE CYS ARG THR LYS ALA SER SEQRES 8 A 331 PRO TYR ASN ARG CYS LYS GLY SER ILE TYR LEU VAL PHE SEQRES 9 A 331 ASP PHE CYS GLU HIS ASP LEU ALA GLY LEU LEU SER ASN SEQRES 10 A 331 VAL LEU VAL LYS PHE THR LEU SER GLU ILE LYS ARG VAL SEQRES 11 A 331 MET GLN MET LEU LEU ASN GLY LEU TYR TYR ILE HIS ARG SEQRES 12 A 331 ASN LYS ILE LEU HIS ARG ASP MET LYS ALA ALA ASN VAL SEQRES 13 A 331 LEU ILE THR ARG ASP GLY VAL LEU LYS LEU ALA ASP PHE SEQRES 14 A 331 GLY LEU ALA ARG ALA PHE SER LEU ALA LYS ASN SER GLN SEQRES 15 A 331 PRO ASN ARG TYR TPO ASN ARG VAL VAL THR LEU TRP TYR SEQRES 16 A 331 ARG PRO PRO GLU LEU LEU LEU GLY GLU ARG ASP TYR GLY SEQRES 17 A 331 PRO PRO ILE ASP LEU TRP GLY ALA GLY CYS ILE MET ALA SEQRES 18 A 331 GLU MET TRP THR ARG SER PRO ILE MET GLN GLY ASN THR SEQRES 19 A 331 GLU GLN HIS GLN LEU ALA LEU ILE SER GLN LEU CYS GLY SEQRES 20 A 331 SER ILE THR PRO GLU VAL TRP PRO ASN VAL ASP ASN TYR SEQRES 21 A 331 GLU LEU TYR GLU LYS LEU GLU LEU VAL LYS GLY GLN LYS SEQRES 22 A 331 ARG LYS VAL LYS ASP ARG LEU LYS ALA TYR VAL ARG ASP SEQRES 23 A 331 PRO TYR ALA LEU ASP LEU ILE ASP LYS LEU LEU VAL LEU SEQRES 24 A 331 ASP PRO ALA GLN ARG ILE ASP SER ASP ASP ALA LEU ASN SEQRES 25 A 331 HIS ASP PHE PHE TRP SER ASP PRO MET PRO SER ASP LEU SEQRES 26 A 331 LYS GLY MET LEU SER THR SEQRES 1 B 260 GLY PRO GLU GLY GLU ARG LYS ASN ASN ASN LYS ARG TRP SEQRES 2 B 260 TYR PHE THR ARG GLU GLN LEU GLU ASN SER PRO SER ARG SEQRES 3 B 260 ARG PHE GLY VAL ASP PRO ASP LYS GLU LEU SER TYR ARG SEQRES 4 B 260 GLN GLN ALA ALA ASN LEU LEU GLN ASP MET GLY GLN ARG SEQRES 5 B 260 LEU ASN VAL SER GLN LEU THR ILE ASN THR ALA ILE VAL SEQRES 6 B 260 TYR MET HIS ARG PHE TYR MET ILE GLN SER PHE THR ARG SEQRES 7 B 260 PHE PRO GLY ASN SER VAL ALA PRO ALA ALA LEU PHE LEU SEQRES 8 B 260 ALA ALA LYS VAL GLU GLY GLN PRO LYS LYS LEU GLU HIS SEQRES 9 B 260 VAL ILE LYS VAL ALA HIS THR CYS LEU HIS PRO GLN GLU SEQRES 10 B 260 SER LEU PRO ASP THR ARG SER GLU ALA TYR LEU GLN GLN SEQRES 11 B 260 VAL GLN ASP LEU VAL ILE LEU GLU SER ILE ILE LEU GLN SEQRES 12 B 260 THR LEU GLY PHE GLU LEU THR ILE ASP HIS PRO HIS THR SEQRES 13 B 260 HIS VAL VAL LYS CYS THR GLN LEU VAL ARG ALA SER LYS SEQRES 14 B 260 ASP LEU ALA GLN THR SER TYR PHE MET ALA THR ASN SER SEQRES 15 B 260 LEU HIS LEU THR THR PHE SER LEU GLN TYR THR PRO PRO SEQRES 16 B 260 VAL VAL ALA CYS VAL CYS ILE HIS LEU ALA CYS LYS TRP SEQRES 17 B 260 SER ASN TRP GLU ILE PRO VAL SER THR ASP GLY LYS HIS SEQRES 18 B 260 TRP TRP GLU TYR VAL ASP ALA THR VAL THR LEU GLU LEU SEQRES 19 B 260 LEU ASP GLU LEU THR HIS GLU LEU LEU GLN ILE LEU GLU SEQRES 20 B 260 LYS THR PRO ASN ARG LEU LYS ARG ILE TRP ASN TRP ARG MODRES 3BLQ TPO A 186 THR PHOSPHOTHREONINE HET TPO A 186 11 HET MG A 331 1 HET ATP A 332 31 HET TRS B 260 8 HETNAM TPO PHOSPHOTHREONINE HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TPO PHOSPHONOTHREONINE HETSYN TRS TRIS BUFFER FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 MG MG 2+ FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 HOH *30(H2 O) HELIX 1 1 GLU A 15 SER A 17 5 3 HELIX 2 2 PRO A 60 LEU A 73 1 14 HELIX 3 3 LEU A 110 ASN A 116 1 7 HELIX 4 4 THR A 122 ASN A 143 1 22 HELIX 5 5 LYS A 151 ALA A 153 5 3 HELIX 6 6 THR A 191 ARG A 195 5 5 HELIX 7 7 PRO A 196 LEU A 201 1 6 HELIX 8 8 PRO A 208 ARG A 225 1 18 HELIX 9 9 THR A 233 GLY A 246 1 14 HELIX 10 10 TYR A 259 LYS A 264 5 6 HELIX 11 11 LEU A 279 ARG A 284 1 6 HELIX 12 12 ASP A 285 LEU A 296 1 12 HELIX 13 13 ASP A 305 HIS A 312 1 8 HELIX 14 14 ASP A 313 TRP A 316 5 4 HELIX 15 15 THR B 15 ASN B 21 1 7 HELIX 16 16 SER B 22 PHE B 27 1 6 HELIX 17 17 ASP B 30 ASN B 53 1 24 HELIX 18 18 SER B 55 TYR B 70 1 16 HELIX 19 19 PRO B 79 GLU B 95 1 17 HELIX 20 20 LYS B 100 HIS B 113 1 14 HELIX 21 21 SER B 123 LEU B 144 1 22 HELIX 22 22 HIS B 152 THR B 161 1 10 HELIX 23 23 SER B 167 THR B 185 1 19 HELIX 24 24 THR B 186 GLN B 190 5 5 HELIX 25 25 THR B 192 SER B 208 1 17 HELIX 26 26 HIS B 220 VAL B 225 5 6 HELIX 27 27 THR B 230 THR B 248 1 19 HELIX 28 28 ASN B 250 TRP B 256 1 7 SHEET 1 A 5 TYR A 19 GLN A 27 0 SHEET 2 A 5 GLU A 32 HIS A 38 -1 O VAL A 33 N ILE A 25 SHEET 3 A 5 LYS A 44 VAL A 50 -1 O LEU A 47 N PHE A 34 SHEET 4 A 5 ILE A 99 ASP A 104 -1 O LEU A 101 N LYS A 48 SHEET 5 A 5 LEU A 81 CYS A 85 -1 N CYS A 85 O TYR A 100 SHEET 1 B 3 HIS A 108 ASP A 109 0 SHEET 2 B 3 VAL A 155 ILE A 157 -1 O ILE A 157 N HIS A 108 SHEET 3 B 3 LEU A 163 LEU A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 C 2 ILE A 145 LEU A 146 0 SHEET 2 C 2 ARG A 172 ALA A 173 -1 O ARG A 172 N LEU A 146 LINK C TYR A 185 N TPO A 186 1555 1555 1.33 LINK C TPO A 186 N ASN A 187 1555 1555 1.33 CISPEP 1 ASP A 318 PRO A 319 0 -2.15 SITE 1 AC1 2 ASN A 154 ASP A 167 SITE 1 AC2 10 GLN A 27 ALA A 46 LYS A 48 PHE A 103 SITE 2 AC2 10 ASP A 104 CYS A 106 ASP A 149 LYS A 151 SITE 3 AC2 10 ASN A 154 ASP A 167 SITE 1 AC3 6 GLN B 46 GLN B 56 THR B 179 ARG B 254 SITE 2 AC3 6 HOH B 271 HOH B 276 CRYST1 173.130 173.130 95.640 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005776 0.003335 0.000000 0.00000 SCALE2 0.000000 0.006670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010456 0.00000