HEADER OXIDOREDUCTASE 14-DEC-07 3BNC TITLE LIPOXYGENASE-1 (SOYBEAN) I553G MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEED LIPOXYGENASE-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-1; COMPND 5 EC: 1.13.11.12; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: LOX1.1, LOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT-7/L-1 KEYWDS DIOXYGENASE, LIPOXYGENASE, METALLOPROTEIN, FATTY ACIDS, FATTY ACID KEYWDS 2 BIOSYNTHESIS, IRON, LIPID SYNTHESIS, METAL-BINDING, OXIDOREDUCTASE, KEYWDS 3 OXYLIPIN BIOSYNTHESIS, ---- EXPDTA X-RAY DIFFRACTION AUTHOR D.R.TOMCHICK REVDAT 5 30-AUG-23 3BNC 1 REMARK REVDAT 4 20-OCT-21 3BNC 1 REMARK SEQADV REVDAT 3 13-JUL-11 3BNC 1 VERSN REVDAT 2 24-FEB-09 3BNC 1 VERSN REVDAT 1 01-APR-08 3BNC 0 JRNL AUTH M.P.MEYER,D.R.TOMCHICK,J.P.KLINMAN JRNL TITL ENZYME STRUCTURE AND DYNAMICS AFFECT HYDROGEN TUNNELING: THE JRNL TITL 2 IMPACT OF A REMOTE SIDE CHAIN (I553) IN SOYBEAN JRNL TITL 3 LIPOXYGENASE-1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 1146 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18216254 JRNL DOI 10.1073/PNAS.0710643105 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.J.KNAPP,J.P.KLINMAN REMARK 1 TITL KINETIC STUDIES OF OXYGEN REACTIVITY IN SOYBEAN REMARK 1 TITL 2 LIPOXYGENASE-1. REMARK 1 REF BIOCHEMISTRY V. 42 11466 2003 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 98058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3067 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6906 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 801 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.43000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.559 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6802 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9257 ; 1.518 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 840 ; 5.643 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 307 ;33.379 ;24.137 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1152 ;12.210 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;14.891 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1014 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5209 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3540 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4749 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 709 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4173 ; 0.855 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6775 ; 1.474 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2629 ; 2.442 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2482 ; 4.015 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): 62.6537 42.7551 1.0853 REMARK 3 T TENSOR REMARK 3 T11: 0.0487 T22: 0.1621 REMARK 3 T33: 0.0777 T12: 0.0160 REMARK 3 T13: 0.0460 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 5.4413 L22: 1.8337 REMARK 3 L33: 0.7503 L12: -2.4484 REMARK 3 L13: 0.5696 L23: 0.4297 REMARK 3 S TENSOR REMARK 3 S11: 0.1899 S12: 0.6844 S13: 0.2665 REMARK 3 S21: -0.1499 S22: -0.2855 S23: -0.1333 REMARK 3 S31: -0.0870 S32: 0.0594 S33: 0.0956 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 57.9735 41.5198 11.9477 REMARK 3 T TENSOR REMARK 3 T11: -0.0057 T22: 0.0933 REMARK 3 T33: 0.0910 T12: -0.0068 REMARK 3 T13: -0.0071 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.6835 L22: 0.8078 REMARK 3 L33: 0.7327 L12: -0.3783 REMARK 3 L13: -0.3212 L23: -0.0631 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: 0.0478 S13: 0.0196 REMARK 3 S21: -0.0873 S22: -0.0454 S23: -0.1433 REMARK 3 S31: 0.0080 S32: 0.1569 S33: 0.0051 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3150 58.3031 12.4781 REMARK 3 T TENSOR REMARK 3 T11: 0.0197 T22: 0.0104 REMARK 3 T33: 0.0229 T12: -0.0163 REMARK 3 T13: 0.0139 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.5538 L22: 0.0513 REMARK 3 L33: 0.3758 L12: -0.1183 REMARK 3 L13: 0.3831 L23: -0.0282 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: 0.0084 S13: 0.1404 REMARK 3 S21: -0.0331 S22: -0.0193 S23: -0.0910 REMARK 3 S31: -0.0906 S32: 0.0361 S33: 0.0199 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 377 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2846 44.3508 6.8433 REMARK 3 T TENSOR REMARK 3 T11: -0.0172 T22: -0.0143 REMARK 3 T33: -0.0492 T12: 0.0009 REMARK 3 T13: -0.0066 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.6853 L22: 1.0139 REMARK 3 L33: 0.3068 L12: 0.0266 REMARK 3 L13: 0.0204 L23: 0.1323 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.0014 S13: -0.0052 REMARK 3 S21: -0.0019 S22: -0.0496 S23: -0.1017 REMARK 3 S31: 0.0091 S32: -0.0338 S33: 0.0419 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 378 A 457 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9665 38.5793 19.4631 REMARK 3 T TENSOR REMARK 3 T11: 0.0550 T22: 0.0279 REMARK 3 T33: -0.0413 T12: -0.0216 REMARK 3 T13: 0.0228 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.9104 L22: 2.3569 REMARK 3 L33: 1.2818 L12: 0.4551 REMARK 3 L13: 0.1374 L23: 0.7194 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: -0.1364 S13: 0.0148 REMARK 3 S21: 0.2577 S22: -0.1068 S23: 0.1089 REMARK 3 S31: -0.0286 S32: -0.0962 S33: 0.0459 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 458 A 499 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8337 46.5572 14.2605 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.0590 REMARK 3 T33: 0.0207 T12: -0.0027 REMARK 3 T13: 0.0184 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.5399 L22: 1.9386 REMARK 3 L33: 1.3123 L12: 0.0153 REMARK 3 L13: 0.1320 L23: -0.1531 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.0734 S13: 0.1929 REMARK 3 S21: 0.1118 S22: -0.0462 S23: 0.1465 REMARK 3 S31: -0.0602 S32: -0.1264 S33: 0.0274 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 500 A 591 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3282 42.1104 19.3192 REMARK 3 T TENSOR REMARK 3 T11: 0.0291 T22: 0.0367 REMARK 3 T33: 0.0082 T12: -0.0132 REMARK 3 T13: -0.0087 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.9995 L22: 0.3229 REMARK 3 L33: 0.3208 L12: 0.0507 REMARK 3 L13: 0.0984 L23: 0.0448 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.1136 S13: 0.0361 REMARK 3 S21: 0.0260 S22: -0.0229 S23: -0.0279 REMARK 3 S31: -0.0234 S32: -0.0084 S33: -0.0023 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 592 A 697 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5425 27.3359 19.8876 REMARK 3 T TENSOR REMARK 3 T11: 0.0560 T22: 0.0369 REMARK 3 T33: 0.0892 T12: -0.0033 REMARK 3 T13: -0.0160 T23: 0.0636 REMARK 3 L TENSOR REMARK 3 L11: 1.1393 L22: 0.4374 REMARK 3 L33: 0.5750 L12: -0.0942 REMARK 3 L13: 0.1835 L23: -0.0525 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: -0.1755 S13: -0.2908 REMARK 3 S21: 0.0849 S22: -0.0346 S23: -0.0679 REMARK 3 S31: 0.1225 S32: 0.0335 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 698 A 768 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3738 51.4518 6.0001 REMARK 3 T TENSOR REMARK 3 T11: 0.0557 T22: 0.0346 REMARK 3 T33: -0.0086 T12: -0.0054 REMARK 3 T13: 0.0021 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.0003 L22: 1.2565 REMARK 3 L33: 0.9136 L12: -0.2262 REMARK 3 L13: -0.1768 L23: -0.0598 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: 0.0433 S13: 0.1022 REMARK 3 S21: 0.0200 S22: -0.0151 S23: 0.0607 REMARK 3 S31: -0.0922 S32: -0.1208 S33: -0.0061 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 769 A 839 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4075 29.7403 0.8653 REMARK 3 T TENSOR REMARK 3 T11: 0.0478 T22: 0.0208 REMARK 3 T33: 0.0586 T12: 0.0162 REMARK 3 T13: 0.0226 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.7517 L22: 0.4419 REMARK 3 L33: 0.6488 L12: -0.0845 REMARK 3 L13: 0.3909 L23: 0.0571 REMARK 3 S TENSOR REMARK 3 S11: 0.0600 S12: 0.1588 S13: -0.2402 REMARK 3 S21: -0.0466 S22: -0.0446 S23: -0.1282 REMARK 3 S31: 0.1128 S32: 0.0951 S33: -0.0154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BNC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102487 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 31.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1F8N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM ACETATE, PH 5.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.13900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 19 REMARK 465 LEU A 20 REMARK 465 GLU A 21 REMARK 465 VAL A 22 REMARK 465 ASN A 23 REMARK 465 PRO A 24 REMARK 465 ASP A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 ASP A 30 REMARK 465 ILE A 117 REMARK 465 SER A 118 REMARK 465 ASN A 119 REMARK 465 GLN A 120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 36 -155.91 -85.71 REMARK 500 TRP A 87 56.81 -148.38 REMARK 500 ASN A 128 62.23 38.88 REMARK 500 GLU A 294 -94.74 -110.88 REMARK 500 VAL A 312 -56.88 70.88 REMARK 500 GLN A 322 -72.38 -116.71 REMARK 500 ALA A 352 16.21 -143.25 REMARK 500 HIS A 499 -71.94 -101.17 REMARK 500 THR A 503 -81.36 -109.13 REMARK 500 ASN A 534 -0.44 73.92 REMARK 500 SER A 560 -130.42 56.97 REMARK 500 SER A 687 -84.86 -104.10 REMARK 500 ASN A 729 71.77 -154.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 840 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 499 NE2 REMARK 620 2 HIS A 504 NE2 90.0 REMARK 620 3 HIS A 690 NE2 101.1 101.7 REMARK 620 4 ILE A 839 OXT 168.7 98.8 84.1 REMARK 620 5 HOH A 841 O 83.3 98.5 159.3 88.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 840 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F8N RELATED DB: PDB REMARK 900 WILD TYPE PROTEIN. REMARK 900 RELATED ID: 3BNB RELATED DB: PDB REMARK 900 I553L MUTANT REMARK 900 RELATED ID: 3BND RELATED DB: PDB REMARK 900 I553V MUTANT REMARK 900 RELATED ID: 3BNE RELATED DB: PDB REMARK 900 I553V MUTANT DBREF 3BNC A 1 839 UNP P08170 LOX1_SOYBN 1 839 SEQADV 3BNC GLU A 160 UNP P08170 SER 160 ENGINEERED MUTATION SEQADV 3BNC GLY A 553 UNP P08170 ILE 553 ENGINEERED MUTATION SEQRES 1 A 839 MET PHE SER ALA GLY HIS LYS ILE LYS GLY THR VAL VAL SEQRES 2 A 839 LEU MET PRO LYS ASN GLU LEU GLU VAL ASN PRO ASP GLY SEQRES 3 A 839 SER ALA VAL ASP ASN LEU ASN ALA PHE LEU GLY ARG SER SEQRES 4 A 839 VAL SER LEU GLN LEU ILE SER ALA THR LYS ALA ASP ALA SEQRES 5 A 839 HIS GLY LYS GLY LYS VAL GLY LYS ASP THR PHE LEU GLU SEQRES 6 A 839 GLY ILE ASN THR SER LEU PRO THR LEU GLY ALA GLY GLU SEQRES 7 A 839 SER ALA PHE ASN ILE HIS PHE GLU TRP ASP GLY SER MET SEQRES 8 A 839 GLY ILE PRO GLY ALA PHE TYR ILE LYS ASN TYR MET GLN SEQRES 9 A 839 VAL GLU PHE PHE LEU LYS SER LEU THR LEU GLU ALA ILE SEQRES 10 A 839 SER ASN GLN GLY THR ILE ARG PHE VAL CYS ASN SER TRP SEQRES 11 A 839 VAL TYR ASN THR LYS LEU TYR LYS SER VAL ARG ILE PHE SEQRES 12 A 839 PHE ALA ASN HIS THR TYR VAL PRO SER GLU THR PRO ALA SEQRES 13 A 839 PRO LEU VAL GLU TYR ARG GLU GLU GLU LEU LYS SER LEU SEQRES 14 A 839 ARG GLY ASN GLY THR GLY GLU ARG LYS GLU TYR ASP ARG SEQRES 15 A 839 ILE TYR ASP TYR ASP VAL TYR ASN ASP LEU GLY ASN PRO SEQRES 16 A 839 ASP LYS SER GLU LYS LEU ALA ARG PRO VAL LEU GLY GLY SEQRES 17 A 839 SER SER THR PHE PRO TYR PRO ARG ARG GLY ARG THR GLY SEQRES 18 A 839 ARG GLY PRO THR VAL THR ASP PRO ASN THR GLU LYS GLN SEQRES 19 A 839 GLY GLU VAL PHE TYR VAL PRO ARG ASP GLU ASN LEU GLY SEQRES 20 A 839 HIS LEU LYS SER LYS ASP ALA LEU GLU ILE GLY THR LYS SEQRES 21 A 839 SER LEU SER GLN ILE VAL GLN PRO ALA PHE GLU SER ALA SEQRES 22 A 839 PHE ASP LEU LYS SER THR PRO ILE GLU PHE HIS SER PHE SEQRES 23 A 839 GLN ASP VAL HIS ASP LEU TYR GLU GLY GLY ILE LYS LEU SEQRES 24 A 839 PRO ARG ASP VAL ILE SER THR ILE ILE PRO LEU PRO VAL SEQRES 25 A 839 ILE LYS GLU LEU TYR ARG THR ASP GLY GLN HIS ILE LEU SEQRES 26 A 839 LYS PHE PRO GLN PRO HIS VAL VAL GLN VAL SER GLN SER SEQRES 27 A 839 ALA TRP MET THR ASP GLU GLU PHE ALA ARG GLU MET ILE SEQRES 28 A 839 ALA GLY VAL ASN PRO CYS VAL ILE ARG GLY LEU GLU GLU SEQRES 29 A 839 PHE PRO PRO LYS SER ASN LEU ASP PRO ALA ILE TYR GLY SEQRES 30 A 839 ASP GLN SER SER LYS ILE THR ALA ASP SER LEU ASP LEU SEQRES 31 A 839 ASP GLY TYR THR MET ASP GLU ALA LEU GLY SER ARG ARG SEQRES 32 A 839 LEU PHE MET LEU ASP TYR HIS ASP ILE PHE MET PRO TYR SEQRES 33 A 839 VAL ARG GLN ILE ASN GLN LEU ASN SER ALA LYS THR TYR SEQRES 34 A 839 ALA THR ARG THR ILE LEU PHE LEU ARG GLU ASP GLY THR SEQRES 35 A 839 LEU LYS PRO VAL ALA ILE GLU LEU SER LEU PRO HIS SER SEQRES 36 A 839 ALA GLY ASP LEU SER ALA ALA VAL SER GLN VAL VAL LEU SEQRES 37 A 839 PRO ALA LYS GLU GLY VAL GLU SER THR ILE TRP LEU LEU SEQRES 38 A 839 ALA LYS ALA TYR VAL ILE VAL ASN ASP SER CYS TYR HIS SEQRES 39 A 839 GLN LEU MET SER HIS TRP LEU ASN THR HIS ALA ALA MET SEQRES 40 A 839 GLU PRO PHE VAL ILE ALA THR HIS ARG HIS LEU SER VAL SEQRES 41 A 839 LEU HIS PRO ILE TYR LYS LEU LEU THR PRO HIS TYR ARG SEQRES 42 A 839 ASN ASN MET ASN ILE ASN ALA LEU ALA ARG GLN SER LEU SEQRES 43 A 839 ILE ASN ALA ASN GLY ILE GLY GLU THR THR PHE LEU PRO SEQRES 44 A 839 SER LYS TYR SER VAL GLU MET SER SER ALA VAL TYR LYS SEQRES 45 A 839 ASN TRP VAL PHE THR ASP GLN ALA LEU PRO ALA ASP LEU SEQRES 46 A 839 ILE LYS ARG GLY VAL ALA ILE LYS ASP PRO SER THR PRO SEQRES 47 A 839 HIS GLY VAL ARG LEU LEU ILE GLU ASP TYR PRO TYR ALA SEQRES 48 A 839 ALA ASP GLY LEU GLU ILE TRP ALA ALA ILE LYS THR TRP SEQRES 49 A 839 VAL GLN GLU TYR VAL PRO LEU TYR TYR ALA ARG ASP ASP SEQRES 50 A 839 ASP VAL LYS ASN ASP SER GLU LEU GLN HIS TRP TRP LYS SEQRES 51 A 839 GLU ALA VAL GLU LYS GLY HIS GLY ASP LEU LYS ASP LYS SEQRES 52 A 839 PRO TRP TRP PRO LYS LEU GLN THR LEU GLU ASP LEU VAL SEQRES 53 A 839 GLU VAL CYS LEU ILE ILE ILE TRP ILE ALA SER ALA LEU SEQRES 54 A 839 HIS ALA ALA VAL ASN PHE GLY GLN TYR PRO TYR GLY GLY SEQRES 55 A 839 LEU ILE MET ASN ARG PRO THR ALA SER ARG ARG LEU LEU SEQRES 56 A 839 PRO GLU LYS GLY THR PRO GLU TYR GLU GLU MET ILE ASN SEQRES 57 A 839 ASN HIS GLU LYS ALA TYR LEU ARG THR ILE THR SER LYS SEQRES 58 A 839 LEU PRO THR LEU ILE SER LEU SER VAL ILE GLU ILE LEU SEQRES 59 A 839 SER THR HIS ALA SER ASP GLU VAL TYR LEU GLY GLN ARG SEQRES 60 A 839 ASP ASN PRO HIS TRP THR SER ASP SER LYS ALA LEU GLN SEQRES 61 A 839 ALA PHE GLN LYS PHE GLY ASN LYS LEU LYS GLU ILE GLU SEQRES 62 A 839 GLU LYS LEU VAL ARG ARG ASN ASN ASP PRO SER LEU GLN SEQRES 63 A 839 GLY ASN ARG LEU GLY PRO VAL GLN LEU PRO TYR THR LEU SEQRES 64 A 839 LEU TYR PRO SER SER GLU GLU GLY LEU THR PHE ARG GLY SEQRES 65 A 839 ILE PRO ASN SER ILE SER ILE HET FE A 840 1 HET ACY A 900 4 HETNAM FE FE (III) ION HETNAM ACY ACETIC ACID FORMUL 2 FE FE 3+ FORMUL 3 ACY C2 H4 O2 FORMUL 4 HOH *801(H2 O) HELIX 1 1 ASN A 31 LEU A 36 5 6 HELIX 2 2 ASN A 133 TYR A 137 5 5 HELIX 3 3 VAL A 150 THR A 154 5 5 HELIX 4 4 PRO A 155 PRO A 157 5 3 HELIX 5 5 LEU A 158 GLY A 171 1 14 HELIX 6 6 SER A 198 ALA A 202 5 5 HELIX 7 7 PRO A 241 ASN A 245 5 5 HELIX 8 8 LYS A 250 ASP A 253 5 4 HELIX 9 9 ALA A 254 ILE A 265 1 12 HELIX 10 10 ILE A 265 LEU A 276 1 12 HELIX 11 11 SER A 285 ASP A 291 1 7 HELIX 12 12 LEU A 292 GLU A 294 5 3 HELIX 13 13 PRO A 300 ILE A 308 1 9 HELIX 14 14 VAL A 312 TYR A 317 5 6 HELIX 15 15 PRO A 330 GLN A 334 5 5 HELIX 16 16 SER A 338 MET A 341 5 4 HELIX 17 17 THR A 342 GLY A 353 1 12 HELIX 18 18 ASP A 372 GLY A 377 1 6 HELIX 19 19 THR A 384 LEU A 388 5 5 HELIX 20 20 THR A 394 SER A 401 1 8 HELIX 21 21 TYR A 409 GLN A 422 1 14 HELIX 22 22 GLU A 472 MET A 497 1 26 HELIX 23 23 THR A 503 LEU A 518 1 16 HELIX 24 24 HIS A 522 THR A 529 1 8 HELIX 25 25 PRO A 530 ARG A 533 5 4 HELIX 26 26 ASN A 534 LEU A 546 1 13 HELIX 27 27 GLY A 551 PHE A 557 1 7 HELIX 28 28 PRO A 559 LYS A 561 5 3 HELIX 29 29 TYR A 562 LYS A 572 1 11 HELIX 30 30 ASN A 573 TRP A 574 5 2 HELIX 31 31 VAL A 575 GLN A 579 5 5 HELIX 32 32 ALA A 580 ARG A 588 1 9 HELIX 33 33 TYR A 608 VAL A 629 1 22 HELIX 34 34 PRO A 630 TYR A 632 5 3 HELIX 35 35 ARG A 635 ASN A 641 1 7 HELIX 36 36 ASP A 642 LYS A 655 1 14 HELIX 37 37 HIS A 657 LYS A 661 5 5 HELIX 38 38 THR A 671 SER A 687 1 17 HELIX 39 39 SER A 687 PHE A 695 1 9 HELIX 40 40 GLY A 696 GLY A 702 1 7 HELIX 41 41 THR A 720 ASN A 729 1 10 HELIX 42 42 ASN A 729 ILE A 738 1 10 HELIX 43 43 SER A 740 SER A 755 1 16 HELIX 44 44 ASP A 775 ASP A 802 1 28 HELIX 45 45 LEU A 805 LEU A 810 1 6 SHEET 1 A 5 GLY A 66 ASN A 68 0 SHEET 2 A 5 SER A 79 PHE A 85 -1 O ASN A 82 N GLY A 66 SHEET 3 A 5 ILE A 8 PRO A 16 -1 N GLY A 10 O ILE A 83 SHEET 4 A 5 PHE A 107 GLU A 115 -1 O PHE A 108 N MET A 15 SHEET 5 A 5 ILE A 123 VAL A 131 -1 O ILE A 123 N LEU A 114 SHEET 1 B 3 GLY A 56 VAL A 58 0 SHEET 2 B 3 VAL A 40 ALA A 50 -1 N SER A 46 O LYS A 57 SHEET 3 B 3 THR A 62 PHE A 63 -1 O THR A 62 N LEU A 42 SHEET 1 C 4 GLY A 56 VAL A 58 0 SHEET 2 C 4 VAL A 40 ALA A 50 -1 N SER A 46 O LYS A 57 SHEET 3 C 4 PRO A 94 ASN A 101 -1 O ALA A 96 N ILE A 45 SHEET 4 C 4 ARG A 141 PHE A 144 -1 O PHE A 143 N PHE A 97 SHEET 1 D 2 TYR A 186 ASP A 187 0 SHEET 2 D 2 ARG A 217 GLY A 218 -1 O ARG A 217 N ASP A 187 SHEET 1 E 3 ILE A 297 LYS A 298 0 SHEET 2 E 3 ILE A 324 LYS A 326 -1 O LEU A 325 N ILE A 297 SHEET 3 E 3 ARG A 318 THR A 319 -1 N ARG A 318 O LYS A 326 SHEET 1 F 5 ARG A 360 GLY A 361 0 SHEET 2 F 5 LEU A 404 ASP A 408 -1 O MET A 406 N ARG A 360 SHEET 3 F 5 ALA A 430 LEU A 437 -1 O LEU A 435 N PHE A 405 SHEET 4 F 5 LEU A 443 SER A 451 -1 O GLU A 449 N ARG A 432 SHEET 5 F 5 GLN A 465 VAL A 467 -1 O GLN A 465 N LEU A 450 SHEET 1 G 2 ALA A 591 LYS A 593 0 SHEET 2 G 2 VAL A 601 LEU A 603 -1 O ARG A 602 N ILE A 592 LINK NE2 HIS A 499 FE FE A 840 1555 1555 2.24 LINK NE2 HIS A 504 FE FE A 840 1555 1555 2.23 LINK NE2 HIS A 690 FE FE A 840 1555 1555 2.19 LINK OXT ILE A 839 FE FE A 840 1555 1555 2.24 LINK FE FE A 840 O HOH A 841 1555 1555 2.16 CISPEP 1 PHE A 365 PRO A 366 0 2.82 SITE 1 AC1 6 HIS A 499 HIS A 504 HIS A 690 ASN A 694 SITE 2 AC1 6 ILE A 839 HOH A 841 SITE 1 AC2 6 PHE A 286 HIS A 290 GLN A 337 TRP A 340 SITE 2 AC2 6 MET A 341 HOH A1329 CRYST1 94.201 92.278 49.584 90.00 90.90 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010616 0.000000 0.000167 0.00000 SCALE2 0.000000 0.010837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020170 0.00000