HEADER TRANSFERASE 17-DEC-07 3BO5 TITLE CRYSTAL STRUCTURE OF METHYLTRANSFERASE DOMAIN OF HUMAN HISTONE-LYSINE TITLE 2 N-METHYLTRANSFERASE SETMAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HISTONE-LYSINE N-METHYLTRANSFERASE DOMAIN: RESIDUES 2-290; COMPND 5 SYNONYM: SET DOMAIN AND MARINER TRANSPOSASE FUSION GENE-CONTAINING COMPND 6 PROTEIN, METNASE, HSMAR1 [INCLUDES: HISTONE-LYSINE N- COMPND 7 METHYLTRANSFERASE, AND MARINER TRANSPOSASE HSMAR1]; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETMAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15B KEYWDS TRANSFERASE, SET DOMAIN, METHYLTRANSFERASE, SETMAR, CHROMATIN KEYWDS 2 REGULATOR, DNA DAMAGE, DNA REPAIR, DNA-BINDING, NUCLEUS, STRUCTURAL KEYWDS 3 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR V.V.LUNIN,H.WU,H.REN,E.DOBROVETSKY,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOCHKAREV,J.MIN,A.N.PLOTNIKOV,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 5 21-FEB-24 3BO5 1 REMARK REVDAT 4 20-OCT-21 3BO5 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3BO5 1 VERSN REVDAT 2 24-FEB-09 3BO5 1 VERSN REVDAT 1 22-JAN-08 3BO5 0 JRNL AUTH H.WU,V.V.LUNIN,H.REN,E.DOBROVETSKY,J.WEIGELT,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,A.BOCHKAREV,J.MIN,A.N.PLOTNIKOV JRNL TITL THE CRYSTAL STRUCTURE OF METHYLTRANSFERASE DOMAIN OF HUMAN JRNL TITL 2 HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR IN COMPLEX WITH JRNL TITL 3 ADOHCY. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 30096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1606 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1880 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.462 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2218 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3016 ; 2.057 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 6.461 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;34.774 ;23.402 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 357 ;12.700 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.138 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 329 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1698 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1092 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1517 ; 0.327 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 289 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 79 ; 0.253 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1389 ; 1.466 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2217 ; 2.294 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 921 ; 2.990 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 793 ; 4.437 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793143, 1.2832396 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31726 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 42.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46100 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M AMMONIUM ACETATE, REMARK 280 0.1 M BIS-TRIS PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.91350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 PHE A 3 REMARK 465 LYS A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 6 REMARK 465 PRO A 7 REMARK 465 GLU A 8 REMARK 465 ALA A 9 REMARK 465 PRO A 10 REMARK 465 ILE A 91 REMARK 465 GLY A 92 REMARK 465 SER A 93 REMARK 465 GLY A 94 REMARK 465 GLY A 95 REMARK 465 VAL A 186 REMARK 465 TYR A 187 REMARK 465 ASN A 188 REMARK 465 GLY A 189 REMARK 465 GLN A 190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CD OE1 OE2 REMARK 470 GLN A 55 CD OE1 NE2 REMARK 470 ASP A 90 CG OD1 OD2 REMARK 470 TYR A 97 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 171 CG CD OE1 NE2 REMARK 470 THR A 172 OG1 CG2 REMARK 470 LYS A 173 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 65 O SER A 288 2747 2.15 REMARK 500 O HOH A 606 O HOH A 689 2646 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 247 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 64 -31.40 -141.52 REMARK 500 ASN A 105 -167.18 -124.44 REMARK 500 VAL A 118 -67.39 -137.23 REMARK 500 VAL A 151 -62.53 -105.77 REMARK 500 ILE A 223 -93.77 -127.96 REMARK 500 ALA A 282 -1.04 75.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 CYS A 75 SG 114.9 REMARK 620 3 CYS A 104 SG 114.1 110.5 REMARK 620 4 CYS A 108 SG 99.2 101.6 115.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 CYS A 63 SG 106.7 REMARK 620 3 CYS A 68 SG 107.5 104.2 REMARK 620 4 CYS A 73 SG 112.0 114.9 111.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 68 SG REMARK 620 2 CYS A 104 SG 110.2 REMARK 620 3 CYS A 110 SG 107.2 107.3 REMARK 620 4 CYS A 114 SG 106.6 111.7 113.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 212 SG REMARK 620 2 CYS A 273 SG 114.4 REMARK 620 3 CYS A 275 SG 107.0 105.5 REMARK 620 4 CYS A 280 SG 110.9 107.0 112.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 307 DBREF 3BO5 A 1 289 UNP Q53H47 SETMR_HUMAN 2 290 SEQADV 3BO5 GLY A 0 UNP Q53H47 EXPRESSION TAG SEQADV 3BO5 ALA A 259 UNP Q53H47 GLU 260 ENGINEERED MUTATION SEQADV 3BO5 SER A 260 UNP Q53H47 ASP 261 ENGINEERED MUTATION SEQRES 1 A 290 GLY ALA GLU PHE LYS GLU LYS PRO GLU ALA PRO THR GLU SEQRES 2 A 290 GLN LEU ASP VAL ALA CYS GLY GLN GLU ASN LEU PRO VAL SEQRES 3 A 290 GLY ALA TRP PRO PRO GLY ALA ALA PRO ALA PRO PHE GLN SEQRES 4 A 290 TYR THR PRO ASP HIS VAL VAL GLY PRO GLY ALA ASP ILE SEQRES 5 A 290 ASP PRO THR GLN ILE THR PHE PRO GLY CYS ILE CYS VAL SEQRES 6 A 290 LYS THR PRO CYS LEU PRO GLY THR CYS SER CYS LEU ARG SEQRES 7 A 290 HIS GLY GLU ASN TYR ASP ASP ASN SER CYS LEU ARG ASP SEQRES 8 A 290 ILE GLY SER GLY GLY LYS TYR ALA GLU PRO VAL PHE GLU SEQRES 9 A 290 CYS ASN VAL LEU CYS ARG CYS SER ASP HIS CYS ARG ASN SEQRES 10 A 290 ARG VAL VAL GLN LYS GLY LEU GLN PHE HIS PHE GLN VAL SEQRES 11 A 290 PHE LYS THR HIS LYS LYS GLY TRP GLY LEU ARG THR LEU SEQRES 12 A 290 GLU PHE ILE PRO LYS GLY ARG PHE VAL CYS GLU TYR ALA SEQRES 13 A 290 GLY GLU VAL LEU GLY PHE SER GLU VAL GLN ARG ARG ILE SEQRES 14 A 290 HIS LEU GLN THR LYS SER ASP SER ASN TYR ILE ILE ALA SEQRES 15 A 290 ILE ARG GLU HIS VAL TYR ASN GLY GLN VAL MET GLU THR SEQRES 16 A 290 PHE VAL ASP PRO THR TYR ILE GLY ASN ILE GLY ARG PHE SEQRES 17 A 290 LEU ASN HIS SER CYS GLU PRO ASN LEU LEU MET ILE PRO SEQRES 18 A 290 VAL ARG ILE ASP SER MET VAL PRO LYS LEU ALA LEU PHE SEQRES 19 A 290 ALA ALA LYS ASP ILE VAL PRO GLU GLU GLU LEU SER TYR SEQRES 20 A 290 ASP TYR SER GLY ARG TYR LEU ASN LEU THR VAL SER ALA SEQRES 21 A 290 SER LYS GLU ARG LEU ASP HIS GLY LYS LEU ARG LYS PRO SEQRES 22 A 290 CYS TYR CYS GLY ALA LYS SER CYS THR ALA PHE LEU PRO SEQRES 23 A 290 PHE ASP SER SER HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET SAH A 305 26 HET GOL A 306 6 HET GOL A 307 6 HETNAM ZN ZINC ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 4(ZN 2+) FORMUL 6 SAH C14 H20 N6 O5 S FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *304(H2 O) HELIX 1 1 CYS A 73 ARG A 77 5 5 HELIX 2 2 VAL A 118 GLY A 122 5 5 HELIX 3 3 GLY A 160 HIS A 169 1 10 HELIX 4 4 ILE A 204 LEU A 208 5 5 SHEET 1 A 5 GLY A 26 TRP A 28 0 SHEET 2 A 5 PHE A 127 LYS A 131 1 O VAL A 129 N GLY A 26 SHEET 3 A 5 TRP A 137 THR A 141 -1 O ARG A 140 N GLN A 128 SHEET 4 A 5 GLU A 243 TYR A 246 -1 O LEU A 244 N LEU A 139 SHEET 5 A 5 ASN A 209 HIS A 210 1 N ASN A 209 O TYR A 246 SHEET 1 B 4 GLN A 38 TYR A 39 0 SHEET 2 B 4 MET A 192 GLY A 202 1 O TYR A 200 N GLN A 38 SHEET 3 B 4 GLY A 156 LEU A 159 -1 N GLU A 157 O ASP A 197 SHEET 4 B 4 VAL A 44 VAL A 45 1 N VAL A 44 O VAL A 158 SHEET 1 C 5 GLN A 38 TYR A 39 0 SHEET 2 C 5 MET A 192 GLY A 202 1 O TYR A 200 N GLN A 38 SHEET 3 C 5 ILE A 180 GLU A 184 -1 N ILE A 182 O THR A 194 SHEET 4 C 5 ALA A 259 ASP A 265 -1 O GLU A 262 N ALA A 181 SHEET 5 C 5 ASP A 287 SER A 288 1 O ASP A 287 N ARG A 263 SHEET 1 D 4 VAL A 101 PHE A 102 0 SHEET 2 D 4 LEU A 216 ARG A 222 1 O ARG A 222 N VAL A 101 SHEET 3 D 4 LYS A 229 ALA A 234 -1 O LYS A 229 N VAL A 221 SHEET 4 D 4 PHE A 150 GLU A 153 -1 N CYS A 152 O LEU A 232 LINK SG CYS A 61 ZN ZN A 301 1555 1555 2.39 LINK SG CYS A 61 ZN ZN A 303 1555 1555 2.36 LINK SG CYS A 63 ZN ZN A 303 1555 1555 2.33 LINK SG CYS A 68 ZN ZN A 302 1555 1555 2.36 LINK SG CYS A 68 ZN ZN A 303 1555 1555 2.41 LINK SG CYS A 73 ZN ZN A 303 1555 1555 2.28 LINK SG CYS A 75 ZN ZN A 301 1555 1555 2.30 LINK SG CYS A 104 ZN ZN A 301 1555 1555 2.35 LINK SG CYS A 104 ZN ZN A 302 1555 1555 2.36 LINK SG CYS A 108 ZN ZN A 301 1555 1555 2.37 LINK SG CYS A 110 ZN ZN A 302 1555 1555 2.30 LINK SG CYS A 114 ZN ZN A 302 1555 1555 2.30 LINK SG CYS A 212 ZN ZN A 304 1555 1555 2.44 LINK SG CYS A 273 ZN ZN A 304 1555 1555 2.39 LINK SG CYS A 275 ZN ZN A 304 1555 1555 2.30 LINK SG CYS A 280 ZN ZN A 304 1555 1555 2.31 CISPEP 1 TRP A 28 PRO A 29 0 4.89 SITE 1 AC1 4 CYS A 61 CYS A 75 CYS A 104 CYS A 108 SITE 1 AC2 4 CYS A 68 CYS A 104 CYS A 110 CYS A 114 SITE 1 AC3 4 CYS A 61 CYS A 63 CYS A 68 CYS A 73 SITE 1 AC4 4 CYS A 212 CYS A 273 CYS A 275 CYS A 280 SITE 1 AC5 21 LYS A 135 GLY A 136 TRP A 137 ASN A 177 SITE 2 AC5 21 TYR A 178 ARG A 206 ASN A 209 HIS A 210 SITE 3 AC5 21 TYR A 248 ARG A 263 PRO A 272 CYS A 273 SITE 4 AC5 21 TYR A 274 CYS A 275 LEU A 284 PHE A 286 SITE 5 AC5 21 HOH A 427 HOH A 473 HOH A 515 HOH A 524 SITE 6 AC5 21 HOH A 627 SITE 1 AC6 4 CYS A 63 VAL A 64 LYS A 65 THR A 66 SITE 1 AC7 4 ASN A 22 LYS A 121 GLN A 124 HOH A 642 CRYST1 41.396 67.827 44.637 90.00 105.93 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024157 0.000000 0.006893 0.00000 SCALE2 0.000000 0.014743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023297 0.00000