HEADER TOXIN/TOXIN INHIBITOR 17-DEC-07 3BOO TITLE STRUCTURE OF THE C. BOTULINUM NEUROTOXIN SEROTYPE A WITH AN INHIBITORY TITLE 2 PEPTIDE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROTOXIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGHT CHAIN (RESIDUES 1-425); COMPND 5 EC: 3.4.24.69; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: N-AC-CRATKML INHIBITORY PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 GENE: BOTA, ATX, BNA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: INHIBITORY PEPTIDE WAS CHEMICALLY SYNTHESIZED KEYWDS BOTULINUM, NEUROTOXIN, METALLOPROTEASE, PEPTIDIC INHIBITOR, TOXIN- KEYWDS 2 TOXIN INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.R.SILVAGGI,K.N.ALLEN REVDAT 8 15-NOV-23 3BOO 1 REMARK REVDAT 7 30-AUG-23 3BOO 1 REMARK LINK REVDAT 6 25-OCT-17 3BOO 1 REMARK REVDAT 5 13-JUL-11 3BOO 1 VERSN REVDAT 4 23-JUN-09 3BOO 1 REMARK SOURCE REVDAT 3 24-FEB-09 3BOO 1 VERSN REVDAT 2 05-AUG-08 3BOO 1 JRNL REVDAT 1 20-MAY-08 3BOO 0 JRNL AUTH N.R.SILVAGGI,D.WILSON,S.TZIPORI,K.N.ALLEN JRNL TITL CATALYTIC FEATURES OF THE BOTULINUM NEUROTOXIN A LIGHT CHAIN JRNL TITL 2 REVEALED BY HIGH RESOLUTION STRUCTURE OF AN INHIBITORY JRNL TITL 3 PEPTIDE COMPLEX. JRNL REF BIOCHEMISTRY V. 47 5736 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18457419 JRNL DOI 10.1021/BI8001067 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 75886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.9900 - 4.1360 0.94 2951 155 0.1410 0.1610 REMARK 3 2 4.1360 - 3.2870 0.98 3028 160 0.1340 0.1550 REMARK 3 3 3.2870 - 2.8730 0.98 3022 158 0.1480 0.1750 REMARK 3 4 2.8730 - 2.6110 0.98 2993 159 0.1410 0.1730 REMARK 3 5 2.6110 - 2.4240 0.97 2978 157 0.1370 0.1670 REMARK 3 6 2.4240 - 2.2810 0.96 2921 151 0.1310 0.1760 REMARK 3 7 2.2810 - 2.1670 0.97 2957 152 0.1330 0.1660 REMARK 3 8 2.1670 - 2.0730 0.96 2926 155 0.1380 0.1790 REMARK 3 9 2.0730 - 1.9930 0.95 2904 152 0.1400 0.1560 REMARK 3 10 1.9930 - 1.9240 0.93 2831 151 0.1440 0.1730 REMARK 3 11 1.9240 - 1.8640 0.92 2786 145 0.1460 0.1880 REMARK 3 12 1.8640 - 1.8110 0.89 2704 144 0.1460 0.1840 REMARK 3 13 1.8110 - 1.7630 0.91 2796 151 0.1500 0.1650 REMARK 3 14 1.7630 - 1.7200 0.88 2672 137 0.1460 0.1790 REMARK 3 15 1.7200 - 1.6810 0.87 2639 140 0.1510 0.1790 REMARK 3 16 1.6810 - 1.6450 0.87 2661 144 0.1570 0.2260 REMARK 3 17 1.6450 - 1.6130 0.85 2549 134 0.1640 0.1920 REMARK 3 18 1.6130 - 1.5820 0.84 2558 137 0.1650 0.1850 REMARK 3 19 1.5820 - 1.5540 0.82 2488 137 0.1660 0.1980 REMARK 3 20 1.5540 - 1.5280 0.80 2427 129 0.1680 0.1860 REMARK 3 21 1.5280 - 1.5030 0.77 2346 113 0.1700 0.1960 REMARK 3 22 1.5030 - 1.4800 0.75 2251 113 0.1760 0.2180 REMARK 3 23 1.4800 - 1.4580 0.72 2213 120 0.1860 0.2530 REMARK 3 24 1.4580 - 1.4380 0.69 2103 108 0.1940 0.2180 REMARK 3 25 1.4380 - 1.4180 0.66 2010 103 0.2060 0.2500 REMARK 3 26 1.4180 - 1.4000 0.64 1956 103 0.2090 0.2970 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 52.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.47900 REMARK 3 B22 (A**2) : -5.21600 REMARK 3 B33 (A**2) : -5.26400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 NULL REMARK 3 ANGLE : 1.181 NULL REMARK 3 CHIRALITY : 0.103 NULL REMARK 3 PLANARITY : 0.007 NULL REMARK 3 DIHEDRAL : 17.997 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ :23 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6834 1.2948 34.7514 REMARK 3 T TENSOR REMARK 3 T11: 0.2279 T22: 0.1485 REMARK 3 T33: 0.1505 T12: -0.0213 REMARK 3 T13: -0.0088 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.0458 L22: 0.1890 REMARK 3 L33: 0.1494 L12: -0.1156 REMARK 3 L13: 0.1207 L23: 0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: -0.0233 S13: 0.0101 REMARK 3 S21: 0.1450 S22: -0.0177 S23: -0.1211 REMARK 3 S31: -0.0654 S32: 0.1360 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 24:47 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7607 -1.7535 31.4289 REMARK 3 T TENSOR REMARK 3 T11: 0.1867 T22: 0.1360 REMARK 3 T33: 0.1861 T12: -0.0193 REMARK 3 T13: 0.0145 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.0184 L22: 0.1308 REMARK 3 L33: 0.1825 L12: 0.0093 REMARK 3 L13: 0.0606 L23: 0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.0284 S13: 0.0732 REMARK 3 S21: 0.0786 S22: 0.0821 S23: 0.2823 REMARK 3 S31: 0.0562 S32: -0.1233 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 48:73 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2994 -16.9809 22.2445 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.1686 REMARK 3 T33: 0.2128 T12: -0.0367 REMARK 3 T13: 0.0201 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.1255 L22: 0.1018 REMARK 3 L33: -0.0410 L12: -0.0689 REMARK 3 L13: 0.0204 L23: -0.1187 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.0755 S13: -0.0275 REMARK 3 S21: 0.0516 S22: -0.0273 S23: 0.2600 REMARK 3 S31: 0.1693 S32: -0.1553 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 74:120 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3737 -0.2172 22.5482 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.1263 REMARK 3 T33: 0.1322 T12: -0.0162 REMARK 3 T13: -0.0027 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.1800 L22: 0.1642 REMARK 3 L33: 0.3887 L12: -0.0200 REMARK 3 L13: -0.0362 L23: 0.2577 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: 0.0038 S13: 0.0048 REMARK 3 S21: 0.0941 S22: -0.0132 S23: -0.0314 REMARK 3 S31: -0.0859 S32: 0.0536 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESSEQ 121:143 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8804 9.3283 31.7034 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.2210 REMARK 3 T33: 0.1940 T12: 0.0297 REMARK 3 T13: 0.0054 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: -0.0184 L22: 0.0498 REMARK 3 L33: 0.0992 L12: -0.0033 REMARK 3 L13: 0.0947 L23: 0.2148 REMARK 3 S TENSOR REMARK 3 S11: -0.0815 S12: -0.1031 S13: 0.0105 REMARK 3 S21: 0.1405 S22: 0.0191 S23: 0.1110 REMARK 3 S31: -0.2145 S32: -0.3133 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESSEQ 144:195 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7300 -2.5184 20.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.1100 T22: 0.1410 REMARK 3 T33: 0.1368 T12: -0.0053 REMARK 3 T13: 0.0033 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.0166 L22: 0.0518 REMARK 3 L33: 0.2457 L12: -0.0125 REMARK 3 L13: -0.0312 L23: -0.1291 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.0086 S13: -0.0254 REMARK 3 S21: 0.0736 S22: -0.0179 S23: 0.0346 REMARK 3 S31: -0.0089 S32: -0.0687 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND RESSEQ 196:238 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8580 -7.9921 6.8417 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.1326 REMARK 3 T33: 0.1372 T12: -0.0099 REMARK 3 T13: -0.0005 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: -0.0475 L22: 0.1198 REMARK 3 L33: 0.2730 L12: -0.0470 REMARK 3 L13: 0.1063 L23: 0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: 0.0183 S13: -0.0037 REMARK 3 S21: -0.0374 S22: -0.0004 S23: 0.0046 REMARK 3 S31: 0.0407 S32: -0.0178 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND RESSEQ 239:268 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6611 -8.5018 -0.9322 REMARK 3 T TENSOR REMARK 3 T11: 0.1233 T22: 0.1577 REMARK 3 T33: 0.1431 T12: -0.0072 REMARK 3 T13: -0.0425 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: -0.0019 L22: 0.1094 REMARK 3 L33: 0.0491 L12: -0.1847 REMARK 3 L13: 0.0518 L23: -0.0594 REMARK 3 S TENSOR REMARK 3 S11: 0.0930 S12: 0.1482 S13: -0.1170 REMARK 3 S21: -0.1991 S22: -0.0694 S23: 0.0275 REMARK 3 S31: 0.0553 S32: -0.0287 S33: -0.0010 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND RESSEQ 269:301 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0007 10.8656 3.9051 REMARK 3 T TENSOR REMARK 3 T11: 0.2556 T22: 0.2408 REMARK 3 T33: 0.1608 T12: 0.1136 REMARK 3 T13: -0.0019 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 0.3243 L22: 0.3447 REMARK 3 L33: 0.3249 L12: 0.1203 REMARK 3 L13: 0.3137 L23: -0.3319 REMARK 3 S TENSOR REMARK 3 S11: -0.0925 S12: 0.0170 S13: -0.0584 REMARK 3 S21: -0.0705 S22: 0.1376 S23: 0.1445 REMARK 3 S31: -0.2383 S32: -0.2222 S33: 0.0013 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND RESSEQ 302:366 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1872 13.4436 12.1673 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.0986 REMARK 3 T33: 0.1358 T12: 0.0042 REMARK 3 T13: 0.0166 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.4544 L22: -0.1764 REMARK 3 L33: 0.8617 L12: 0.0478 REMARK 3 L13: -0.1657 L23: -0.1505 REMARK 3 S TENSOR REMARK 3 S11: 0.1226 S12: 0.0260 S13: 0.1434 REMARK 3 S21: -0.0942 S22: 0.0007 S23: -0.1311 REMARK 3 S31: -0.3817 S32: 0.0009 S33: 0.0023 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN A AND RESSEQ 367:398 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5444 -10.1904 14.2758 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.1641 REMARK 3 T33: 0.1569 T12: -0.0237 REMARK 3 T13: 0.0009 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.1730 L22: 0.3149 REMARK 3 L33: 0.1751 L12: -0.1903 REMARK 3 L13: -0.2486 L23: 0.1521 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: -0.0751 S13: -0.0015 REMARK 3 S21: -0.0751 S22: 0.0126 S23: -0.1167 REMARK 3 S31: -0.0031 S32: 0.0528 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN A AND RESSEQ 399:423 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7583 -18.8621 10.1304 REMARK 3 T TENSOR REMARK 3 T11: 0.1349 T22: 0.1705 REMARK 3 T33: 0.1650 T12: -0.0128 REMARK 3 T13: 0.0135 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.1374 L22: 0.1457 REMARK 3 L33: 0.2127 L12: -0.0445 REMARK 3 L13: -0.0533 L23: 0.1290 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: 0.1221 S13: -0.2019 REMARK 3 S21: -0.0381 S22: 0.0656 S23: -0.1195 REMARK 3 S31: 0.1501 S32: 0.0320 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 11.3753 -13.8439 7.6429 REMARK 3 T TENSOR REMARK 3 T11: 0.1817 T22: 0.1745 REMARK 3 T33: 0.1959 T12: -0.0443 REMARK 3 T13: 0.0273 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 0.0036 L22: 0.0072 REMARK 3 L33: 0.0120 L12: -0.0088 REMARK 3 L13: -0.0001 L23: 0.0138 REMARK 3 S TENSOR REMARK 3 S11: -0.2159 S12: -0.0004 S13: -0.1669 REMARK 3 S21: 0.1342 S22: -0.0454 S23: 0.2592 REMARK 3 S31: 0.1794 S32: -0.1572 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RIDING HYDROGEN ATOMS WERE USED IN THE REMARK 3 REFINEMENT REMARK 4 REMARK 4 3BOO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9500 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ID 3BOK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1M AMMONIUM TARTRATE, REMARK 280 PH 6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.28550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 62 REMARK 465 PRO A 63 REMARK 465 GLU A 64 REMARK 465 ALA A 65 REMARK 465 LYS A 66 REMARK 465 GLN A 67 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 165 CB CYS A 165 SG -0.276 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 270 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 17 -71.87 -122.14 REMARK 500 ASP A 74 102.65 -164.90 REMARK 500 SER A 157 -150.87 -78.08 REMARK 500 ASN A 368 -168.82 -127.93 REMARK 500 ASN A 409 48.14 -99.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 223 NE2 REMARK 620 2 HIS A 227 NE2 101.4 REMARK 620 3 GLU A 262 OE1 108.0 101.5 REMARK 620 4 CSO B 1 SG 107.1 136.2 100.4 REMARK 620 5 CSO B 1 OD 115.5 95.8 128.5 41.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF N-AC-CRATKML REMARK 800 INHIBITORY PEPTIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BOK RELATED DB: PDB REMARK 900 RELATED ID: 3BON RELATED DB: PDB DBREF 3BOO A 1 425 UNP A2I2U2 A2I2U2_CLOBO 1 425 DBREF 3BOO B 0 7 PDB 3BOO 3BOO 0 7 SEQRES 1 A 425 MET GLN PHE VAL ASN LYS GLN PHE ASN TYR LYS ASP PRO SEQRES 2 A 425 VAL ASN GLY VAL ASP ILE ALA TYR ILE LYS ILE PRO ASN SEQRES 3 A 425 VAL GLY GLN MET GLN PRO VAL LYS ALA PHE LYS ILE HIS SEQRES 4 A 425 ASN LYS ILE TRP VAL ILE PRO GLU ARG ASP THR PHE THR SEQRES 5 A 425 ASN PRO GLU GLU GLY ASP LEU ASN PRO PRO PRO GLU ALA SEQRES 6 A 425 LYS GLN VAL PRO VAL SER TYR TYR ASP SER THR TYR LEU SEQRES 7 A 425 SER THR ASP ASN GLU LYS ASP ASN TYR LEU LYS GLY VAL SEQRES 8 A 425 THR LYS LEU PHE GLU ARG ILE TYR SER THR ASP LEU GLY SEQRES 9 A 425 ARG MET LEU LEU THR SER ILE VAL ARG GLY ILE PRO PHE SEQRES 10 A 425 TRP GLY GLY SER THR ILE ASP THR GLU LEU LYS VAL ILE SEQRES 11 A 425 ASP THR ASN CYS ILE ASN VAL ILE GLN PRO ASP GLY SER SEQRES 12 A 425 TYR ARG SER GLU GLU LEU ASN LEU VAL ILE ILE GLY PRO SEQRES 13 A 425 SER ALA ASP ILE ILE GLN PHE GLU CYS LYS SER PHE GLY SEQRES 14 A 425 HIS GLU VAL LEU ASN LEU THR ARG ASN GLY TYR GLY SER SEQRES 15 A 425 THR GLN TYR ILE ARG PHE SER PRO ASP PHE THR PHE GLY SEQRES 16 A 425 PHE GLU GLU SER LEU GLU VAL ASP THR ASN PRO LEU LEU SEQRES 17 A 425 GLY ALA GLY LYS PHE ALA THR ASP PRO ALA VAL THR LEU SEQRES 18 A 425 ALA HIS GLU LEU ILE HIS ALA GLY HIS ARG LEU TYR GLY SEQRES 19 A 425 ILE ALA ILE ASN PRO ASN ARG VAL PHE LYS VAL ASN THR SEQRES 20 A 425 ASN ALA TYR TYR GLU MET SER GLY LEU GLU VAL SER PHE SEQRES 21 A 425 GLU GLU LEU ARG THR PHE GLY GLY HIS ASP ALA LYS PHE SEQRES 22 A 425 ILE ASP SER LEU GLN GLU ASN GLU PHE ARG LEU TYR TYR SEQRES 23 A 425 TYR ASN LYS PHE LYS ASP ILE ALA SER THR LEU ASN LYS SEQRES 24 A 425 ALA LYS SER ILE VAL GLY THR THR ALA SER LEU GLN TYR SEQRES 25 A 425 MET LYS ASN VAL PHE LYS GLU LYS TYR LEU LEU SER GLU SEQRES 26 A 425 ASP THR SER GLY LYS PHE SER VAL ASP LYS LEU LYS PHE SEQRES 27 A 425 ASP LYS LEU TYR LYS MET LEU THR GLU ILE TYR THR GLU SEQRES 28 A 425 ASP ASN PHE VAL LYS PHE PHE LYS VAL LEU ASN ARG LYS SEQRES 29 A 425 THR TYR LEU ASN PHE ASP LYS ALA VAL PHE LYS ILE ASN SEQRES 30 A 425 ILE VAL PRO LYS VAL ASN TYR THR ILE TYR ASP GLY PHE SEQRES 31 A 425 ASN LEU ARG ASN THR ASN LEU ALA ALA ASN PHE ASN GLY SEQRES 32 A 425 GLN ASN THR GLU ILE ASN ASN MET ASN PHE THR LYS LEU SEQRES 33 A 425 LYS ASN PHE THR GLY LEU PHE GLU PHE SEQRES 1 B 8 ACE CSO ARG ALA THR LYS MET LEU MODRES 3BOO CSO B 1 CYS S-HYDROXYCYSTEINE HET ACE B 0 3 HET CSO B 1 7 HET ZN A 500 1 HETNAM ACE ACETYL GROUP HETNAM CSO S-HYDROXYCYSTEINE HETNAM ZN ZINC ION FORMUL 2 ACE C2 H4 O FORMUL 2 CSO C3 H7 N O3 S FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *612(H2 O) HELIX 1 1 THR A 80 SER A 100 1 21 HELIX 2 2 THR A 101 GLY A 114 1 14 HELIX 3 3 ILE A 130 THR A 132 5 3 HELIX 4 4 SER A 199 THR A 204 1 6 HELIX 5 5 ASP A 216 TYR A 233 1 18 HELIX 6 6 ASN A 248 GLY A 255 1 8 HELIX 7 7 PHE A 260 GLY A 267 1 8 HELIX 8 8 GLY A 267 LYS A 272 1 6 HELIX 9 9 ASP A 275 ALA A 300 1 26 HELIX 10 10 SER A 309 LEU A 322 1 14 HELIX 11 11 ASP A 334 ILE A 348 1 15 HELIX 12 12 THR A 350 LYS A 359 1 10 HELIX 13 13 PHE A 401 ASN A 405 5 5 HELIX 14 14 ASN A 409 PHE A 413 5 5 HELIX 15 15 ARG B 2 LEU B 7 5 6 SHEET 1 A 8 TYR A 144 GLU A 148 0 SHEET 2 A 8 CYS A 134 ILE A 138 -1 N VAL A 137 O ARG A 145 SHEET 3 A 8 ILE A 19 LYS A 23 -1 N TYR A 21 O ILE A 138 SHEET 4 A 8 VAL A 33 HIS A 39 -1 O ALA A 35 N ALA A 20 SHEET 5 A 8 ILE A 42 ARG A 48 -1 O VAL A 44 N PHE A 36 SHEET 6 A 8 LEU A 151 GLY A 155 1 O ILE A 153 N ILE A 45 SHEET 7 A 8 GLN A 184 ARG A 187 1 O ILE A 186 N VAL A 152 SHEET 8 A 8 GLU A 164 LYS A 166 -1 N LYS A 166 O TYR A 185 SHEET 1 B 2 GLU A 126 LEU A 127 0 SHEET 2 B 2 SER A 302 ILE A 303 1 O SER A 302 N LEU A 127 SHEET 1 C 4 PHE A 213 ALA A 214 0 SHEET 2 C 4 PHE A 192 PHE A 196 -1 N PHE A 196 O PHE A 213 SHEET 3 C 4 ALA A 372 LYS A 375 -1 O PHE A 374 N THR A 193 SHEET 4 C 4 THR A 414 ASN A 418 -1 O LEU A 416 N VAL A 373 SHEET 1 D 2 VAL A 242 LYS A 244 0 SHEET 2 D 2 GLU A 257 SER A 259 -1 O VAL A 258 N PHE A 243 SHEET 1 E 2 SER A 324 GLU A 325 0 SHEET 2 E 2 PHE A 331 SER A 332 -1 O SER A 332 N SER A 324 LINK C ACE B 0 N CSO B 1 1555 1555 1.33 LINK C CSO B 1 N ARG B 2 1555 1555 1.33 LINK NE2 HIS A 223 ZN ZN A 500 1555 1555 2.02 LINK NE2 HIS A 227 ZN ZN A 500 1555 1555 2.10 LINK OE1 GLU A 262 ZN ZN A 500 1555 1555 1.90 LINK ZN ZN A 500 SG CSO B 1 1555 1555 2.33 LINK ZN ZN A 500 OD CSO B 1 1555 1555 2.31 SITE 1 AC1 4 HIS A 223 HIS A 227 GLU A 262 CSO B 1 SITE 1 AC2 24 VAL A 70 ILE A 161 PHE A 163 PHE A 194 SITE 2 AC2 24 HIS A 223 GLU A 224 HIS A 227 TYR A 251 SITE 3 AC2 24 LEU A 256 GLU A 262 ARG A 363 TYR A 366 SITE 4 AC2 24 ASP A 370 ZN A 500 HOH A 533 HOH A 550 SITE 5 AC2 24 HOH A 614 HOH A 621 HOH A 886 HOH A1105 SITE 6 AC2 24 HOH B 137 HOH B 190 HOH B 468 HOH B 472 CRYST1 50.046 66.571 65.380 90.00 98.63 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019982 0.000000 0.003033 0.00000 SCALE2 0.000000 0.015022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015470 0.00000