data_3BP5 # _entry.id 3BP5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BP5 pdb_00003bp5 10.2210/pdb3bp5/pdb RCSB RCSB045792 ? ? WWPDB D_1000045792 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-08-30 6 'Structure model' 1 5 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model 8 6 'Structure model' pdbx_entry_details 9 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_ref_seq_dif.details' 13 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3BP5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3BP6 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yan, Q.' 1 'Lazar-Molnar, E.' 2 'Cao, E.' 3 'Ramagopal, U.A.' 4 'Toro, R.' 5 'Nathenson, S.G.' 6 'Almo, S.C.' 7 # _citation.id primary _citation.title 'Crystal structure of the complex between programmed death-1 (PD-1) and its ligand PD-L2.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 105 _citation.page_first 10483 _citation.page_last 10488 _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18641123 _citation.pdbx_database_id_DOI 10.1073/pnas.0804453105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lazar-Molnar, E.' 1 ? primary 'Yan, Q.' 2 ? primary 'Cao, E.' 3 ? primary 'Ramagopal, U.' 4 ? primary 'Nathenson, S.G.' 5 ? primary 'Almo, S.C.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Programmed cell death protein 1' 13176.714 1 ? C50S 'Extrocellular domain' ? 2 polymer man 'Programmed cell death 1 ligand 2' 22797.139 1 ? ? 'Extrocellular domain' ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 149 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Protein PD-1, mPD-1, CD279 antigen' 2 'Programmed death ligand 2, PD-L2, PD-1-ligand 2, PDCD1 ligand 2, Butyrophilin B7-DC, B7-DC, CD273 antigen' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDT RRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILE ; ;SLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDT RRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILE ; A ? 2 'polypeptide(L)' no no ;MLFTVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSG QYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTS VLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKVPRT ; ;MLFTVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSG QYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTS VLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKVPRT ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 THR n 1 4 PHE n 1 5 TYR n 1 6 PRO n 1 7 ALA n 1 8 TRP n 1 9 LEU n 1 10 THR n 1 11 VAL n 1 12 SER n 1 13 GLU n 1 14 GLY n 1 15 ALA n 1 16 ASN n 1 17 ALA n 1 18 THR n 1 19 PHE n 1 20 THR n 1 21 CYS n 1 22 SER n 1 23 LEU n 1 24 SER n 1 25 ASN n 1 26 TRP n 1 27 SER n 1 28 GLU n 1 29 ASP n 1 30 LEU n 1 31 MET n 1 32 LEU n 1 33 ASN n 1 34 TRP n 1 35 ASN n 1 36 ARG n 1 37 LEU n 1 38 SER n 1 39 PRO n 1 40 SER n 1 41 ASN n 1 42 GLN n 1 43 THR n 1 44 GLU n 1 45 LYS n 1 46 GLN n 1 47 ALA n 1 48 ALA n 1 49 PHE n 1 50 SER n 1 51 ASN n 1 52 GLY n 1 53 LEU n 1 54 SER n 1 55 GLN n 1 56 PRO n 1 57 VAL n 1 58 GLN n 1 59 ASP n 1 60 ALA n 1 61 ARG n 1 62 PHE n 1 63 GLN n 1 64 ILE n 1 65 ILE n 1 66 GLN n 1 67 LEU n 1 68 PRO n 1 69 ASN n 1 70 ARG n 1 71 HIS n 1 72 ASP n 1 73 PHE n 1 74 HIS n 1 75 MET n 1 76 ASN n 1 77 ILE n 1 78 LEU n 1 79 ASP n 1 80 THR n 1 81 ARG n 1 82 ARG n 1 83 ASN n 1 84 ASP n 1 85 SER n 1 86 GLY n 1 87 ILE n 1 88 TYR n 1 89 LEU n 1 90 CYS n 1 91 GLY n 1 92 ALA n 1 93 ILE n 1 94 SER n 1 95 LEU n 1 96 HIS n 1 97 PRO n 1 98 LYS n 1 99 ALA n 1 100 LYS n 1 101 ILE n 1 102 GLU n 1 103 GLU n 1 104 SER n 1 105 PRO n 1 106 GLY n 1 107 ALA n 1 108 GLU n 1 109 LEU n 1 110 VAL n 1 111 VAL n 1 112 THR n 1 113 GLU n 1 114 ARG n 1 115 ILE n 1 116 LEU n 1 117 GLU n 2 1 MET n 2 2 LEU n 2 3 PHE n 2 4 THR n 2 5 VAL n 2 6 THR n 2 7 ALA n 2 8 PRO n 2 9 LYS n 2 10 GLU n 2 11 VAL n 2 12 TYR n 2 13 THR n 2 14 VAL n 2 15 ASP n 2 16 VAL n 2 17 GLY n 2 18 SER n 2 19 SER n 2 20 VAL n 2 21 SER n 2 22 LEU n 2 23 GLU n 2 24 CYS n 2 25 ASP n 2 26 PHE n 2 27 ASP n 2 28 ARG n 2 29 ARG n 2 30 GLU n 2 31 CYS n 2 32 THR n 2 33 GLU n 2 34 LEU n 2 35 GLU n 2 36 GLY n 2 37 ILE n 2 38 ARG n 2 39 ALA n 2 40 SER n 2 41 LEU n 2 42 GLN n 2 43 LYS n 2 44 VAL n 2 45 GLU n 2 46 ASN n 2 47 ASP n 2 48 THR n 2 49 SER n 2 50 LEU n 2 51 GLN n 2 52 SER n 2 53 GLU n 2 54 ARG n 2 55 ALA n 2 56 THR n 2 57 LEU n 2 58 LEU n 2 59 GLU n 2 60 GLU n 2 61 GLN n 2 62 LEU n 2 63 PRO n 2 64 LEU n 2 65 GLY n 2 66 LYS n 2 67 ALA n 2 68 LEU n 2 69 PHE n 2 70 HIS n 2 71 ILE n 2 72 PRO n 2 73 SER n 2 74 VAL n 2 75 GLN n 2 76 VAL n 2 77 ARG n 2 78 ASP n 2 79 SER n 2 80 GLY n 2 81 GLN n 2 82 TYR n 2 83 ARG n 2 84 CYS n 2 85 LEU n 2 86 VAL n 2 87 ILE n 2 88 CYS n 2 89 GLY n 2 90 ALA n 2 91 ALA n 2 92 TRP n 2 93 ASP n 2 94 TYR n 2 95 LYS n 2 96 TYR n 2 97 LEU n 2 98 THR n 2 99 VAL n 2 100 LYS n 2 101 VAL n 2 102 LYS n 2 103 ALA n 2 104 SER n 2 105 TYR n 2 106 MET n 2 107 ARG n 2 108 ILE n 2 109 ASP n 2 110 THR n 2 111 ARG n 2 112 ILE n 2 113 LEU n 2 114 GLU n 2 115 VAL n 2 116 PRO n 2 117 GLY n 2 118 THR n 2 119 GLY n 2 120 GLU n 2 121 VAL n 2 122 GLN n 2 123 LEU n 2 124 THR n 2 125 CYS n 2 126 GLN n 2 127 ALA n 2 128 ARG n 2 129 GLY n 2 130 TYR n 2 131 PRO n 2 132 LEU n 2 133 ALA n 2 134 GLU n 2 135 VAL n 2 136 SER n 2 137 TRP n 2 138 GLN n 2 139 ASN n 2 140 VAL n 2 141 SER n 2 142 VAL n 2 143 PRO n 2 144 ALA n 2 145 ASN n 2 146 THR n 2 147 SER n 2 148 HIS n 2 149 ILE n 2 150 ARG n 2 151 THR n 2 152 PRO n 2 153 GLU n 2 154 GLY n 2 155 LEU n 2 156 TYR n 2 157 GLN n 2 158 VAL n 2 159 THR n 2 160 SER n 2 161 VAL n 2 162 LEU n 2 163 ARG n 2 164 LEU n 2 165 LYS n 2 166 PRO n 2 167 GLN n 2 168 PRO n 2 169 SER n 2 170 ARG n 2 171 ASN n 2 172 PHE n 2 173 SER n 2 174 CYS n 2 175 MET n 2 176 PHE n 2 177 TRP n 2 178 ASN n 2 179 ALA n 2 180 HIS n 2 181 MET n 2 182 LYS n 2 183 GLU n 2 184 LEU n 2 185 THR n 2 186 SER n 2 187 ALA n 2 188 ILE n 2 189 ILE n 2 190 ASP n 2 191 PRO n 2 192 LEU n 2 193 SER n 2 194 ARG n 2 195 MET n 2 196 GLU n 2 197 PRO n 2 198 LYS n 2 199 VAL n 2 200 PRO n 2 201 ARG n 2 202 THR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? Mouse ? 'Pdcd1, Pd1' ? ? ? ? ? ? 'Mus musculus' ? ? ? ? ? ? ? ? ? 'Escherichia coli' ? ? ? ? ? ? ? 'Rosetta (DE3) pLysS' ? ? ? ? ? ? ? ? ? ? ? pET-3a ? ? 2 1 sample ? ? ? Mouse ? 'Pdcd1lg2, B7dc, Btdc, Cd273, Pdl2' ? ? ? ? ? ? 'Mus musculus' ? ? ? ? ? ? ? ? ? 'Escherichia coli' ? ? ? ? ? ? ? 'Rosetta (DE3) pLysS' ? ? ? ? ? ? ? ? ? ? ? pET-3a ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 MET 31 31 31 MET MET A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 TRP 34 34 34 TRP TRP A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 HIS 74 74 74 HIS HIS A . n A 1 75 MET 75 75 75 MET MET A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 CYS 90 90 90 CYS CYS A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 ILE 115 115 ? ? ? A . n A 1 116 LEU 116 116 ? ? ? A . n A 1 117 GLU 117 117 ? ? ? A . n B 2 1 MET 1 19 19 MET MET B . n B 2 2 LEU 2 20 20 LEU LEU B . n B 2 3 PHE 3 21 21 PHE PHE B . n B 2 4 THR 4 22 22 THR THR B . n B 2 5 VAL 5 23 23 VAL VAL B . n B 2 6 THR 6 24 24 THR THR B . n B 2 7 ALA 7 25 25 ALA ALA B . n B 2 8 PRO 8 26 26 PRO PRO B . n B 2 9 LYS 9 27 27 LYS LYS B . n B 2 10 GLU 10 28 28 GLU GLU B . n B 2 11 VAL 11 29 29 VAL VAL B . n B 2 12 TYR 12 30 30 TYR TYR B . n B 2 13 THR 13 31 31 THR THR B . n B 2 14 VAL 14 32 32 VAL VAL B . n B 2 15 ASP 15 33 33 ASP ASP B . n B 2 16 VAL 16 34 34 VAL VAL B . n B 2 17 GLY 17 35 35 GLY GLY B . n B 2 18 SER 18 36 36 SER SER B . n B 2 19 SER 19 37 37 SER SER B . n B 2 20 VAL 20 38 38 VAL VAL B . n B 2 21 SER 21 39 39 SER SER B . n B 2 22 LEU 22 40 40 LEU LEU B . n B 2 23 GLU 23 41 41 GLU GLU B . n B 2 24 CYS 24 42 42 CYS CYS B . n B 2 25 ASP 25 43 43 ASP ASP B . n B 2 26 PHE 26 44 44 PHE PHE B . n B 2 27 ASP 27 45 45 ASP ASP B . n B 2 28 ARG 28 46 46 ARG ARG B . n B 2 29 ARG 29 47 47 ARG ARG B . n B 2 30 GLU 30 48 48 GLU GLU B . n B 2 31 CYS 31 49 49 CYS CYS B . n B 2 32 THR 32 50 50 THR THR B . n B 2 33 GLU 33 51 51 GLU GLU B . n B 2 34 LEU 34 52 52 LEU LEU B . n B 2 35 GLU 35 53 53 GLU GLU B . n B 2 36 GLY 36 54 54 GLY GLY B . n B 2 37 ILE 37 55 55 ILE ILE B . n B 2 38 ARG 38 56 56 ARG ARG B . n B 2 39 ALA 39 57 57 ALA ALA B . n B 2 40 SER 40 58 58 SER SER B . n B 2 41 LEU 41 59 59 LEU LEU B . n B 2 42 GLN 42 60 60 GLN GLN B . n B 2 43 LYS 43 61 61 LYS LYS B . n B 2 44 VAL 44 62 62 VAL VAL B . n B 2 45 GLU 45 63 63 GLU GLU B . n B 2 46 ASN 46 64 64 ASN ASN B . n B 2 47 ASP 47 65 65 ASP ASP B . n B 2 48 THR 48 66 66 THR THR B . n B 2 49 SER 49 67 67 SER SER B . n B 2 50 LEU 50 68 68 LEU LEU B . n B 2 51 GLN 51 69 69 GLN GLN B . n B 2 52 SER 52 70 70 SER SER B . n B 2 53 GLU 53 71 71 GLU GLU B . n B 2 54 ARG 54 72 72 ARG ARG B . n B 2 55 ALA 55 73 73 ALA ALA B . n B 2 56 THR 56 74 74 THR THR B . n B 2 57 LEU 57 75 75 LEU LEU B . n B 2 58 LEU 58 76 76 LEU LEU B . n B 2 59 GLU 59 77 77 GLU GLU B . n B 2 60 GLU 60 78 78 GLU GLU B . n B 2 61 GLN 61 79 79 GLN GLN B . n B 2 62 LEU 62 80 80 LEU LEU B . n B 2 63 PRO 63 81 81 PRO PRO B . n B 2 64 LEU 64 82 82 LEU LEU B . n B 2 65 GLY 65 83 83 GLY GLY B . n B 2 66 LYS 66 84 84 LYS LYS B . n B 2 67 ALA 67 85 85 ALA ALA B . n B 2 68 LEU 68 86 86 LEU LEU B . n B 2 69 PHE 69 87 87 PHE PHE B . n B 2 70 HIS 70 88 88 HIS HIS B . n B 2 71 ILE 71 89 89 ILE ILE B . n B 2 72 PRO 72 90 90 PRO PRO B . n B 2 73 SER 73 91 91 SER SER B . n B 2 74 VAL 74 92 92 VAL VAL B . n B 2 75 GLN 75 93 93 GLN GLN B . n B 2 76 VAL 76 94 94 VAL VAL B . n B 2 77 ARG 77 95 95 ARG ARG B . n B 2 78 ASP 78 96 96 ASP ASP B . n B 2 79 SER 79 97 97 SER SER B . n B 2 80 GLY 80 98 98 GLY GLY B . n B 2 81 GLN 81 99 99 GLN GLN B . n B 2 82 TYR 82 100 100 TYR TYR B . n B 2 83 ARG 83 101 101 ARG ARG B . n B 2 84 CYS 84 102 102 CYS CYS B . n B 2 85 LEU 85 103 103 LEU LEU B . n B 2 86 VAL 86 104 104 VAL VAL B . n B 2 87 ILE 87 105 105 ILE ILE B . n B 2 88 CYS 88 106 106 CYS CYS B . n B 2 89 GLY 89 107 107 GLY GLY B . n B 2 90 ALA 90 108 108 ALA ALA B . n B 2 91 ALA 91 109 109 ALA ALA B . n B 2 92 TRP 92 110 110 TRP TRP B . n B 2 93 ASP 93 111 111 ASP ASP B . n B 2 94 TYR 94 112 112 TYR TYR B . n B 2 95 LYS 95 113 113 LYS LYS B . n B 2 96 TYR 96 114 114 TYR TYR B . n B 2 97 LEU 97 115 115 LEU LEU B . n B 2 98 THR 98 116 116 THR THR B . n B 2 99 VAL 99 117 117 VAL VAL B . n B 2 100 LYS 100 118 118 LYS LYS B . n B 2 101 VAL 101 119 119 VAL VAL B . n B 2 102 LYS 102 120 120 LYS LYS B . n B 2 103 ALA 103 121 121 ALA ALA B . n B 2 104 SER 104 122 122 SER SER B . n B 2 105 TYR 105 123 123 TYR TYR B . n B 2 106 MET 106 124 124 MET MET B . n B 2 107 ARG 107 125 125 ARG ARG B . n B 2 108 ILE 108 126 126 ILE ILE B . n B 2 109 ASP 109 127 127 ASP ASP B . n B 2 110 THR 110 128 128 THR THR B . n B 2 111 ARG 111 129 129 ARG ARG B . n B 2 112 ILE 112 130 130 ILE ILE B . n B 2 113 LEU 113 131 131 LEU LEU B . n B 2 114 GLU 114 132 132 GLU GLU B . n B 2 115 VAL 115 133 133 VAL VAL B . n B 2 116 PRO 116 134 134 PRO PRO B . n B 2 117 GLY 117 135 135 GLY GLY B . n B 2 118 THR 118 136 136 THR THR B . n B 2 119 GLY 119 137 137 GLY GLY B . n B 2 120 GLU 120 138 138 GLU GLU B . n B 2 121 VAL 121 139 139 VAL VAL B . n B 2 122 GLN 122 140 140 GLN GLN B . n B 2 123 LEU 123 141 141 LEU LEU B . n B 2 124 THR 124 142 142 THR THR B . n B 2 125 CYS 125 143 143 CYS CYS B . n B 2 126 GLN 126 144 144 GLN GLN B . n B 2 127 ALA 127 145 145 ALA ALA B . n B 2 128 ARG 128 146 146 ARG ARG B . n B 2 129 GLY 129 147 147 GLY GLY B . n B 2 130 TYR 130 148 148 TYR TYR B . n B 2 131 PRO 131 149 149 PRO PRO B . n B 2 132 LEU 132 150 150 LEU LEU B . n B 2 133 ALA 133 151 151 ALA ALA B . n B 2 134 GLU 134 152 152 GLU GLU B . n B 2 135 VAL 135 153 153 VAL VAL B . n B 2 136 SER 136 154 154 SER SER B . n B 2 137 TRP 137 155 155 TRP TRP B . n B 2 138 GLN 138 156 156 GLN GLN B . n B 2 139 ASN 139 157 157 ASN ASN B . n B 2 140 VAL 140 158 158 VAL VAL B . n B 2 141 SER 141 159 159 SER SER B . n B 2 142 VAL 142 160 160 VAL VAL B . n B 2 143 PRO 143 161 161 PRO PRO B . n B 2 144 ALA 144 162 162 ALA ALA B . n B 2 145 ASN 145 163 163 ASN ASN B . n B 2 146 THR 146 164 164 THR THR B . n B 2 147 SER 147 165 165 SER SER B . n B 2 148 HIS 148 166 166 HIS HIS B . n B 2 149 ILE 149 167 167 ILE ILE B . n B 2 150 ARG 150 168 168 ARG ARG B . n B 2 151 THR 151 169 169 THR THR B . n B 2 152 PRO 152 170 170 PRO PRO B . n B 2 153 GLU 153 171 171 GLU GLU B . n B 2 154 GLY 154 172 172 GLY GLY B . n B 2 155 LEU 155 173 173 LEU LEU B . n B 2 156 TYR 156 174 174 TYR TYR B . n B 2 157 GLN 157 175 175 GLN GLN B . n B 2 158 VAL 158 176 176 VAL VAL B . n B 2 159 THR 159 177 177 THR THR B . n B 2 160 SER 160 178 178 SER SER B . n B 2 161 VAL 161 179 179 VAL VAL B . n B 2 162 LEU 162 180 180 LEU LEU B . n B 2 163 ARG 163 181 181 ARG ARG B . n B 2 164 LEU 164 182 182 LEU LEU B . n B 2 165 LYS 165 183 183 LYS LYS B . n B 2 166 PRO 166 184 184 PRO PRO B . n B 2 167 GLN 167 185 185 GLN GLN B . n B 2 168 PRO 168 186 186 PRO PRO B . n B 2 169 SER 169 187 187 SER SER B . n B 2 170 ARG 170 188 188 ARG ARG B . n B 2 171 ASN 171 189 189 ASN ASN B . n B 2 172 PHE 172 190 190 PHE PHE B . n B 2 173 SER 173 191 191 SER SER B . n B 2 174 CYS 174 192 192 CYS CYS B . n B 2 175 MET 175 193 193 MET MET B . n B 2 176 PHE 176 194 194 PHE PHE B . n B 2 177 TRP 177 195 195 TRP TRP B . n B 2 178 ASN 178 196 196 ASN ASN B . n B 2 179 ALA 179 197 197 ALA ALA B . n B 2 180 HIS 180 198 198 HIS HIS B . n B 2 181 MET 181 199 199 MET MET B . n B 2 182 LYS 182 200 200 LYS LYS B . n B 2 183 GLU 183 201 201 GLU GLU B . n B 2 184 LEU 184 202 202 LEU LEU B . n B 2 185 THR 185 203 203 THR THR B . n B 2 186 SER 186 204 204 SER SER B . n B 2 187 ALA 187 205 205 ALA ALA B . n B 2 188 ILE 188 206 206 ILE ILE B . n B 2 189 ILE 189 207 207 ILE ILE B . n B 2 190 ASP 190 208 208 ASP ASP B . n B 2 191 PRO 191 209 209 PRO PRO B . n B 2 192 LEU 192 210 ? ? ? B . n B 2 193 SER 193 211 ? ? ? B . n B 2 194 ARG 194 212 ? ? ? B . n B 2 195 MET 195 213 ? ? ? B . n B 2 196 GLU 196 214 ? ? ? B . n B 2 197 PRO 197 215 ? ? ? B . n B 2 198 LYS 198 216 ? ? ? B . n B 2 199 VAL 199 217 ? ? ? B . n B 2 200 PRO 200 218 ? ? ? B . n B 2 201 ARG 201 219 ? ? ? B . n B 2 202 THR 202 220 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 1 1 GOL GOL B . D 4 HOH 1 118 1 HOH HOH A . D 4 HOH 2 119 6 HOH HOH A . D 4 HOH 3 120 7 HOH HOH A . D 4 HOH 4 121 9 HOH HOH A . D 4 HOH 5 122 12 HOH HOH A . D 4 HOH 6 123 13 HOH HOH A . D 4 HOH 7 124 14 HOH HOH A . D 4 HOH 8 125 19 HOH HOH A . D 4 HOH 9 126 25 HOH HOH A . D 4 HOH 10 127 26 HOH HOH A . D 4 HOH 11 128 27 HOH HOH A . D 4 HOH 12 129 28 HOH HOH A . D 4 HOH 13 130 29 HOH HOH A . D 4 HOH 14 131 30 HOH HOH A . D 4 HOH 15 132 31 HOH HOH A . D 4 HOH 16 133 32 HOH HOH A . D 4 HOH 17 134 33 HOH HOH A . D 4 HOH 18 135 34 HOH HOH A . D 4 HOH 19 136 35 HOH HOH A . D 4 HOH 20 137 36 HOH HOH A . D 4 HOH 21 138 38 HOH HOH A . D 4 HOH 22 139 39 HOH HOH A . D 4 HOH 23 140 40 HOH HOH A . D 4 HOH 24 141 41 HOH HOH A . D 4 HOH 25 142 42 HOH HOH A . D 4 HOH 26 143 43 HOH HOH A . D 4 HOH 27 144 45 HOH HOH A . D 4 HOH 28 145 46 HOH HOH A . D 4 HOH 29 146 47 HOH HOH A . D 4 HOH 30 147 48 HOH HOH A . D 4 HOH 31 148 49 HOH HOH A . D 4 HOH 32 149 50 HOH HOH A . D 4 HOH 33 150 51 HOH HOH A . D 4 HOH 34 151 52 HOH HOH A . D 4 HOH 35 152 53 HOH HOH A . D 4 HOH 36 153 54 HOH HOH A . D 4 HOH 37 154 55 HOH HOH A . D 4 HOH 38 155 56 HOH HOH A . D 4 HOH 39 156 57 HOH HOH A . D 4 HOH 40 157 58 HOH HOH A . D 4 HOH 41 158 60 HOH HOH A . D 4 HOH 42 159 61 HOH HOH A . D 4 HOH 43 160 123 HOH HOH A . D 4 HOH 44 161 125 HOH HOH A . D 4 HOH 45 162 126 HOH HOH A . D 4 HOH 46 163 127 HOH HOH A . D 4 HOH 47 164 129 HOH HOH A . D 4 HOH 48 165 130 HOH HOH A . D 4 HOH 49 166 131 HOH HOH A . D 4 HOH 50 167 133 HOH HOH A . D 4 HOH 51 168 135 HOH HOH A . D 4 HOH 52 169 136 HOH HOH A . D 4 HOH 53 170 138 HOH HOH A . D 4 HOH 54 171 140 HOH HOH A . D 4 HOH 55 172 142 HOH HOH A . D 4 HOH 56 173 143 HOH HOH A . D 4 HOH 57 174 146 HOH HOH A . D 4 HOH 58 175 147 HOH HOH A . D 4 HOH 59 176 149 HOH HOH A . E 4 HOH 1 221 2 HOH HOH B . E 4 HOH 2 222 5 HOH HOH B . E 4 HOH 3 223 8 HOH HOH B . E 4 HOH 4 224 10 HOH HOH B . E 4 HOH 5 225 15 HOH HOH B . E 4 HOH 6 226 16 HOH HOH B . E 4 HOH 7 227 17 HOH HOH B . E 4 HOH 8 228 18 HOH HOH B . E 4 HOH 9 229 20 HOH HOH B . E 4 HOH 10 230 21 HOH HOH B . E 4 HOH 11 231 22 HOH HOH B . E 4 HOH 12 232 23 HOH HOH B . E 4 HOH 13 233 24 HOH HOH B . E 4 HOH 14 234 37 HOH HOH B . E 4 HOH 15 235 44 HOH HOH B . E 4 HOH 16 236 59 HOH HOH B . E 4 HOH 17 237 62 HOH HOH B . E 4 HOH 18 238 63 HOH HOH B . E 4 HOH 19 239 64 HOH HOH B . E 4 HOH 20 240 65 HOH HOH B . E 4 HOH 21 241 66 HOH HOH B . E 4 HOH 22 242 67 HOH HOH B . E 4 HOH 23 243 68 HOH HOH B . E 4 HOH 24 244 69 HOH HOH B . E 4 HOH 25 245 70 HOH HOH B . E 4 HOH 26 246 71 HOH HOH B . E 4 HOH 27 247 72 HOH HOH B . E 4 HOH 28 248 73 HOH HOH B . E 4 HOH 29 249 74 HOH HOH B . E 4 HOH 30 250 75 HOH HOH B . E 4 HOH 31 251 76 HOH HOH B . E 4 HOH 32 252 77 HOH HOH B . E 4 HOH 33 253 78 HOH HOH B . E 4 HOH 34 254 79 HOH HOH B . E 4 HOH 35 255 80 HOH HOH B . E 4 HOH 36 256 81 HOH HOH B . E 4 HOH 37 257 82 HOH HOH B . E 4 HOH 38 258 83 HOH HOH B . E 4 HOH 39 259 84 HOH HOH B . E 4 HOH 40 260 85 HOH HOH B . E 4 HOH 41 261 86 HOH HOH B . E 4 HOH 42 262 87 HOH HOH B . E 4 HOH 43 263 88 HOH HOH B . E 4 HOH 44 264 89 HOH HOH B . E 4 HOH 45 265 90 HOH HOH B . E 4 HOH 46 266 91 HOH HOH B . E 4 HOH 47 267 92 HOH HOH B . E 4 HOH 48 268 93 HOH HOH B . E 4 HOH 49 269 94 HOH HOH B . E 4 HOH 50 270 95 HOH HOH B . E 4 HOH 51 271 96 HOH HOH B . E 4 HOH 52 272 97 HOH HOH B . E 4 HOH 53 273 98 HOH HOH B . E 4 HOH 54 274 99 HOH HOH B . E 4 HOH 55 275 100 HOH HOH B . E 4 HOH 56 276 101 HOH HOH B . E 4 HOH 57 277 102 HOH HOH B . E 4 HOH 58 278 103 HOH HOH B . E 4 HOH 59 279 104 HOH HOH B . E 4 HOH 60 280 105 HOH HOH B . E 4 HOH 61 281 106 HOH HOH B . E 4 HOH 62 282 108 HOH HOH B . E 4 HOH 63 283 109 HOH HOH B . E 4 HOH 64 284 110 HOH HOH B . E 4 HOH 65 285 111 HOH HOH B . E 4 HOH 66 286 112 HOH HOH B . E 4 HOH 67 287 113 HOH HOH B . E 4 HOH 68 288 114 HOH HOH B . E 4 HOH 69 289 115 HOH HOH B . E 4 HOH 70 290 116 HOH HOH B . E 4 HOH 71 291 117 HOH HOH B . E 4 HOH 72 292 118 HOH HOH B . E 4 HOH 73 293 119 HOH HOH B . E 4 HOH 74 294 120 HOH HOH B . E 4 HOH 75 295 121 HOH HOH B . E 4 HOH 76 296 122 HOH HOH B . E 4 HOH 77 297 124 HOH HOH B . E 4 HOH 78 298 128 HOH HOH B . E 4 HOH 79 299 132 HOH HOH B . E 4 HOH 80 300 134 HOH HOH B . E 4 HOH 81 301 137 HOH HOH B . E 4 HOH 82 302 139 HOH HOH B . E 4 HOH 83 303 141 HOH HOH B . E 4 HOH 84 304 144 HOH HOH B . E 4 HOH 85 305 145 HOH HOH B . E 4 HOH 86 306 148 HOH HOH B . E 4 HOH 87 307 150 HOH HOH B . E 4 HOH 88 308 151 HOH HOH B . E 4 HOH 89 309 152 HOH HOH B . E 4 HOH 90 310 153 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.3.0034 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CBASS . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? 7 # _cell.entry_id 3BP5 _cell.length_a 43.933 _cell.length_b 84.056 _cell.length_c 52.108 _cell.angle_alpha 90.00 _cell.angle_beta 107.88 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BP5 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3BP5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_percent_sol 51.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Sitting drop' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '20% PEG 6000, 0.1 M Tris pH 8.5, Sitting drop, temperature 291K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-09-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 3BP5 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.700 _reflns.number_obs 39403 _reflns.number_all ? _reflns.percent_possible_obs 99.200 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.800 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.600 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.70 1.76 97.80 0.573 ? ? 3.50 ? ? ? ? ? ? 1 1 1.76 1.83 98.40 0.500 ? ? 3.70 ? ? ? ? ? ? 2 1 1.83 1.91 98.60 0.399 ? ? 4.00 ? ? ? ? ? ? 3 1 1.91 2.02 99.30 0.305 ? ? 4.30 ? ? ? ? ? ? 4 1 2.02 2.14 99.50 0.231 ? ? 4.60 ? ? ? ? ? ? 5 1 2.14 2.31 99.70 0.173 ? ? 4.80 ? ? ? ? ? ? 6 1 2.31 2.54 99.80 0.130 ? ? 4.90 ? ? ? ? ? ? 7 1 2.54 2.91 99.70 0.095 ? ? 5.10 ? ? ? ? ? ? 8 1 2.91 3.66 99.80 0.054 ? ? 5.50 ? ? ? ? ? ? 9 1 3.66 30.00 99.80 0.035 ? ? 5.80 ? ? ? ? ? ? 10 1 # _refine.entry_id 3BP5 _refine.ls_number_reflns_obs 31433 _refine.ls_number_reflns_all 39378 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.95 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 98.62 _refine.ls_R_factor_obs 0.19169 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18970 _refine.ls_R_factor_R_free 0.22848 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1666 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.B_iso_mean 29.223 _refine.aniso_B[1][1] -0.28 _refine.aniso_B[2][2] 1.34 _refine.aniso_B[3][3] -0.86 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.34 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model '1npu, 1pkq' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.123 _refine.pdbx_overall_ESU_R_Free 0.121 _refine.overall_SU_ML 0.087 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.743 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2406 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 149 _refine_hist.number_atoms_total 2561 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 24.95 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 2539 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.347 1.959 ? 3467 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 11.976 5.000 ? 325 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.161 23.879 ? 116 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.806 15.000 ? 442 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.965 15.000 ? 20 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 394 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1922 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.183 0.300 ? 944 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.309 0.500 ? 1694 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.162 0.500 ? 325 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.177 0.300 ? 46 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.130 0.500 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.987 2.000 ? 1597 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 4.287 3.000 ? 2549 'X-RAY DIFFRACTION' ? r_scbond_it 3.234 2.000 ? 1060 'X-RAY DIFFRACTION' ? r_scangle_it 4.652 3.000 ? 908 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.843 _refine_ls_shell.number_reflns_R_work 2164 _refine_ls_shell.R_factor_R_work 0.245 _refine_ls_shell.percent_reflns_obs 92.66 _refine_ls_shell.R_factor_R_free 0.337 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 109 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BP5 _struct.title 'Crystal structure of the mouse PD-1 and PD-L2 complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BP5 _struct_keywords.text 'PD-1, PD-L2, Complex, Costimulation, Glycoprotein, Immunoglobulin domain, Membrane, Transmembrane, Receptor, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PDCD1_MOUSE Q02242 1 ;SLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFCNGLSQPVQDARFQIIQLPNRHDFHMNILDT RRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILE ; 34 ? 2 UNP PD1L2_MOUSE Q9WUL5 2 ;LFTVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQ YRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSV LRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKVPRT ; 20 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BP5 A 1 ? 117 ? Q02242 34 ? 150 ? 1 117 2 2 3BP5 B 2 ? 202 ? Q9WUL5 20 ? 220 ? 20 220 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BP5 SER A 50 ? UNP Q02242 CYS 83 'engineered mutation' 50 1 2 3BP5 MET B 1 ? UNP Q9WUL5 ? ? 'expression tag' 19 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 3080 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 81 ? SER A 85 ? ARG A 81 SER A 85 5 ? 5 HELX_P HELX_P2 2 GLU B 33 ? GLU B 35 ? GLU B 51 GLU B 53 5 ? 3 HELX_P HELX_P3 3 GLU B 59 ? LEU B 64 ? GLU B 77 LEU B 82 5 ? 6 HELX_P HELX_P4 4 GLN B 75 ? SER B 79 ? GLN B 93 SER B 97 5 ? 5 HELX_P HELX_P5 5 ALA B 179 ? LYS B 182 ? ALA B 197 LYS B 200 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 90 SG ? ? A CYS 21 A CYS 90 1_555 ? ? ? ? ? ? ? 2.047 ? ? disulf2 disulf ? ? B CYS 24 SG ? ? ? 1_555 B CYS 84 SG ? ? B CYS 42 B CYS 102 1_555 ? ? ? ? ? ? ? 2.011 ? ? disulf3 disulf ? ? B CYS 31 SG ? ? ? 1_555 B CYS 88 SG ? ? B CYS 49 B CYS 106 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf4 disulf ? ? B CYS 125 SG ? ? ? 1_555 B CYS 174 SG ? ? B CYS 143 B CYS 192 1_555 ? ? ? ? ? ? ? 2.036 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 21 ? CYS A 90 ? CYS A 21 ? 1_555 CYS A 90 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 24 ? CYS B 84 ? CYS B 42 ? 1_555 CYS B 102 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS B 31 ? CYS B 88 ? CYS B 49 ? 1_555 CYS B 106 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 125 ? CYS B 174 ? CYS B 143 ? 1_555 CYS B 192 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 4 ? E ? 5 ? F ? 4 ? G ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 2 ? TYR A 5 ? LEU A 2 TYR A 5 A 2 ALA A 17 ? LEU A 23 ? ALA A 17 LEU A 23 A 3 ASP A 72 ? ILE A 77 ? ASP A 72 ILE A 77 A 4 PHE A 62 ? GLN A 66 ? PHE A 62 GLN A 66 B 1 TRP A 8 ? SER A 12 ? TRP A 8 SER A 12 B 2 ALA A 107 ? THR A 112 ? ALA A 107 THR A 112 B 3 GLY A 86 ? ILE A 93 ? GLY A 86 ILE A 93 B 4 MET A 31 ? LEU A 37 ? MET A 31 LEU A 37 B 5 THR A 43 ? SER A 50 ? THR A 43 SER A 50 B 6 LEU A 53 ? PRO A 56 ? LEU A 53 PRO A 56 C 1 TRP A 8 ? SER A 12 ? TRP A 8 SER A 12 C 2 ALA A 107 ? THR A 112 ? ALA A 107 THR A 112 C 3 GLY A 86 ? ILE A 93 ? GLY A 86 ILE A 93 C 4 GLU A 102 ? GLU A 103 ? GLU A 102 GLU A 103 D 1 VAL B 5 ? THR B 6 ? VAL B 23 THR B 24 D 2 VAL B 20 ? PHE B 26 ? VAL B 38 PHE B 44 D 3 LYS B 66 ? ILE B 71 ? LYS B 84 ILE B 89 D 4 THR B 56 ? LEU B 57 ? THR B 74 LEU B 75 E 1 VAL B 11 ? ASP B 15 ? VAL B 29 ASP B 33 E 2 ALA B 91 ? LYS B 102 ? ALA B 109 LYS B 120 E 3 GLY B 80 ? CYS B 88 ? GLY B 98 CYS B 106 E 4 ILE B 37 ? VAL B 44 ? ILE B 55 VAL B 62 E 5 SER B 49 ? GLN B 51 ? SER B 67 GLN B 69 F 1 ILE B 108 ? GLU B 114 ? ILE B 126 GLU B 132 F 2 VAL B 121 ? GLY B 129 ? VAL B 139 GLY B 147 F 3 TYR B 156 ? LEU B 164 ? TYR B 174 LEU B 182 F 4 ASN B 145 ? ARG B 150 ? ASN B 163 ARG B 168 G 1 GLU B 134 ? TRP B 137 ? GLU B 152 TRP B 155 G 2 PHE B 172 ? ASN B 178 ? PHE B 190 ASN B 196 G 3 GLU B 183 ? ILE B 189 ? GLU B 201 ILE B 207 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 3 ? N THR A 3 O SER A 22 ? O SER A 22 A 2 3 N PHE A 19 ? N PHE A 19 O MET A 75 ? O MET A 75 A 3 4 O ASN A 76 ? O ASN A 76 N GLN A 63 ? N GLN A 63 B 1 2 N VAL A 11 ? N VAL A 11 O THR A 112 ? O THR A 112 B 2 3 O LEU A 109 ? O LEU A 109 N GLY A 86 ? N GLY A 86 B 3 4 O GLY A 91 ? O GLY A 91 N ASN A 33 ? N ASN A 33 B 4 5 N TRP A 34 ? N TRP A 34 O GLN A 46 ? O GLN A 46 B 5 6 N ALA A 48 ? N ALA A 48 O GLN A 55 ? O GLN A 55 C 1 2 N VAL A 11 ? N VAL A 11 O THR A 112 ? O THR A 112 C 2 3 O LEU A 109 ? O LEU A 109 N GLY A 86 ? N GLY A 86 C 3 4 N ALA A 92 ? N ALA A 92 O GLU A 102 ? O GLU A 102 D 1 2 N THR B 6 ? N THR B 24 O ASP B 25 ? O ASP B 43 D 2 3 N CYS B 24 ? N CYS B 42 O ALA B 67 ? O ALA B 85 D 3 4 O HIS B 70 ? O HIS B 88 N THR B 56 ? N THR B 74 E 1 2 N TYR B 12 ? N TYR B 30 O LYS B 100 ? O LYS B 118 E 2 3 O LEU B 97 ? O LEU B 115 N TYR B 82 ? N TYR B 100 E 3 4 O LEU B 85 ? O LEU B 103 N SER B 40 ? N SER B 58 E 4 5 N LYS B 43 ? N LYS B 61 O LEU B 50 ? O LEU B 68 F 1 2 N LEU B 113 ? N LEU B 131 O GLN B 122 ? O GLN B 140 F 2 3 N LEU B 123 ? N LEU B 141 O LEU B 162 ? O LEU B 180 F 3 4 O VAL B 161 ? O VAL B 179 N ASN B 145 ? N ASN B 163 G 1 2 N SER B 136 ? N SER B 154 O MET B 175 ? O MET B 193 G 2 3 N ASN B 178 ? N ASN B 196 O GLU B 183 ? O GLU B 201 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE GOL B 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 SER A 40 ? SER A 40 . ? 1_555 ? 2 AC1 7 GLU B 10 ? GLU B 28 . ? 1_555 ? 3 AC1 7 GLN B 81 ? GLN B 99 . ? 1_555 ? 4 AC1 7 TYR B 96 ? TYR B 114 . ? 1_555 ? 5 AC1 7 LEU B 97 ? LEU B 115 . ? 1_555 ? 6 AC1 7 THR B 98 ? THR B 116 . ? 1_555 ? 7 AC1 7 HOH E . ? HOH B 294 . ? 1_555 ? # _pdbx_entry_details.entry_id 3BP5 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 58 ? ? -153.16 -6.97 2 1 ARG A 70 ? ? 65.23 -13.73 3 1 LEU B 20 ? ? -90.31 36.94 4 1 GLU B 51 ? ? -68.82 83.95 5 1 PRO B 149 ? ? -32.95 -168.88 6 1 SER B 187 ? ? 55.76 18.12 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 TYR A 5 ? ? PRO A 6 ? ? 42.84 2 1 TYR B 148 ? ? PRO B 149 ? ? -52.77 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 TYR A 5 ? ? 11.17 2 1 TYR B 148 ? ? -10.21 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 115 ? A ILE 115 2 1 Y 1 A LEU 116 ? A LEU 116 3 1 Y 1 A GLU 117 ? A GLU 117 4 1 Y 1 B LEU 210 ? B LEU 192 5 1 Y 1 B SER 211 ? B SER 193 6 1 Y 1 B ARG 212 ? B ARG 194 7 1 Y 1 B MET 213 ? B MET 195 8 1 Y 1 B GLU 214 ? B GLU 196 9 1 Y 1 B PRO 215 ? B PRO 197 10 1 Y 1 B LYS 216 ? B LYS 198 11 1 Y 1 B VAL 217 ? B VAL 199 12 1 Y 1 B PRO 218 ? B PRO 200 13 1 Y 1 B ARG 219 ? B ARG 201 14 1 Y 1 B THR 220 ? B THR 202 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1NPU '1npu, 1pkq' 2 ? 'experimental model' PDB 1PKQ '1npu, 1pkq' # _atom_sites.entry_id 3BP5 _atom_sites.fract_transf_matrix[1][1] 0.022762 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007343 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011897 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020165 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_